Small RNAs(sRNAs)are important non-coding RNAs that usually play crucial roles in gene expression at the post-transcriptional level.The sRNAs have mostly been investigated in model microorganisms such as Escherichia c...Small RNAs(sRNAs)are important non-coding RNAs that usually play crucial roles in gene expression at the post-transcriptional level.The sRNAs have mostly been investigated in model microorganisms such as Escherichia coli and some pathogens.Nevertheless,microbial sRNAs from extreme environments such as the polar regions and deep sea have recently been discovered and analyzed for their unique roles in stress response,metabolic regulation and adaptation to extreme environments.These sRNAs fine-tune gene expression during oxidative and radiation stress,and modulate temperature and osmotic pressure responses.Representative sRNAs and their functions in thermophilic,psychrophilic,halophilic and radiation-tolerant bacteria are summarized in this review.Despite challenges in sample collection,RNA isolation,and functional annotation,the study of sRNAs in extreme environments provides opportunities for discovering novel regulatory mechanisms,applying them to biotechnology,and advancing our understanding of evolutionary adaptations.Looking ahead,high-throughput sequencing,synthetic biology,and multi-omics integration will bring new breakthroughs in discovering novel sRNAs and their functions and regulatory mechanisms.Such advancements are poised to enable comprehensive characterization of sRNA-mediated regulatory networks in extremophiles and unlock their biotechnological potential through mechanism-driven applications.展开更多
Species of the genus Paenibacillus,especially those from extreme environments that have been reported,are known for producing bioactive compounds with agricultural and biotechnological applications.In this study,we in...Species of the genus Paenibacillus,especially those from extreme environments that have been reported,are known for producing bioactive compounds with agricultural and biotechnological applications.In this study,we investigated the genomic and biochemical potential of Paenibacillus sp.VCA1 strain isolated from a thermophilic environment.Taxonomic identification was performed using whole genome similarity analysis,TETRA four-nucleotide frequency of occurrence analysis,ANI average nucleotide identity analysis,and gene distance analysis using digital DNA-DNA hybridization(dDDH).Functional analysis of the strain VCA1 was performed by detecting genes,enzymes,and genome subsystems involved in biocontrol and plant growth promotion,which was carried out using the RAST(Rapid Annotation using Subsystem Technology),the seed server and antiSAMSH(antibiotics&Secondary Metabolite Analysis Shell).Genetic analyses showed the existence of 11 fatty acid and isoprenoid production genes,56 motility and chemotaxis genes,29 N-acetylglucosamine genes,and five siderophore genes.Finally,the antifungal and emulsifying activities demonstrated that strain VCA1 has activity against Fusarium oxysporum strain 45ta using integrated genomic and experimental validation,and the antifungal properties of the Paenibacillus sp.VCA1 has suggested potential use as a biocontrol agent against phytopathogenic fungi,and its continuous study can have beneficial applications in sustainable agriculture and biotechnology.展开更多
This paper critically re-examines the anthropocentric“Goldilocks Zone”paradigm that has dominated the search for extraterrestrial life.As of 2024,more than 5,500 exoplanets have been identified,yet only about 2%are ...This paper critically re-examines the anthropocentric“Goldilocks Zone”paradigm that has dominated the search for extraterrestrial life.As of 2024,more than 5,500 exoplanets have been identified,yet only about 2%are located within the traditionally defined habitable zone(National Aeronautics and Space Administration(NASA)Exoplanet Archive,2024;Kane et al.,2023).Moreover,the discovery of extremophiles-organisms thriving in high-radiation,extreme heat,or vacuum environments-demonstrates that the boundaries of life far exceed Earth-like conditions(Rothschild&Mancinelli,2001).展开更多
基金supported by the National Natural Science Foundation of China(Grant nos.42476264,41976224).
文摘Small RNAs(sRNAs)are important non-coding RNAs that usually play crucial roles in gene expression at the post-transcriptional level.The sRNAs have mostly been investigated in model microorganisms such as Escherichia coli and some pathogens.Nevertheless,microbial sRNAs from extreme environments such as the polar regions and deep sea have recently been discovered and analyzed for their unique roles in stress response,metabolic regulation and adaptation to extreme environments.These sRNAs fine-tune gene expression during oxidative and radiation stress,and modulate temperature and osmotic pressure responses.Representative sRNAs and their functions in thermophilic,psychrophilic,halophilic and radiation-tolerant bacteria are summarized in this review.Despite challenges in sample collection,RNA isolation,and functional annotation,the study of sRNAs in extreme environments provides opportunities for discovering novel regulatory mechanisms,applying them to biotechnology,and advancing our understanding of evolutionary adaptations.Looking ahead,high-throughput sequencing,synthetic biology,and multi-omics integration will bring new breakthroughs in discovering novel sRNAs and their functions and regulatory mechanisms.Such advancements are poised to enable comprehensive characterization of sRNA-mediated regulatory networks in extremophiles and unlock their biotechnological potential through mechanism-driven applications.
基金funded by Tecnologico Nacional de Mexico/IT de Tuxtla Gutierrez with project number 22847.25-PFunding came from the“Consejo Nacional de Humanidades,Ciencias y Tecnologias”(CONAHCYT,Mexico),with Project No.320299.
文摘Species of the genus Paenibacillus,especially those from extreme environments that have been reported,are known for producing bioactive compounds with agricultural and biotechnological applications.In this study,we investigated the genomic and biochemical potential of Paenibacillus sp.VCA1 strain isolated from a thermophilic environment.Taxonomic identification was performed using whole genome similarity analysis,TETRA four-nucleotide frequency of occurrence analysis,ANI average nucleotide identity analysis,and gene distance analysis using digital DNA-DNA hybridization(dDDH).Functional analysis of the strain VCA1 was performed by detecting genes,enzymes,and genome subsystems involved in biocontrol and plant growth promotion,which was carried out using the RAST(Rapid Annotation using Subsystem Technology),the seed server and antiSAMSH(antibiotics&Secondary Metabolite Analysis Shell).Genetic analyses showed the existence of 11 fatty acid and isoprenoid production genes,56 motility and chemotaxis genes,29 N-acetylglucosamine genes,and five siderophore genes.Finally,the antifungal and emulsifying activities demonstrated that strain VCA1 has activity against Fusarium oxysporum strain 45ta using integrated genomic and experimental validation,and the antifungal properties of the Paenibacillus sp.VCA1 has suggested potential use as a biocontrol agent against phytopathogenic fungi,and its continuous study can have beneficial applications in sustainable agriculture and biotechnology.
文摘This paper critically re-examines the anthropocentric“Goldilocks Zone”paradigm that has dominated the search for extraterrestrial life.As of 2024,more than 5,500 exoplanets have been identified,yet only about 2%are located within the traditionally defined habitable zone(National Aeronautics and Space Administration(NASA)Exoplanet Archive,2024;Kane et al.,2023).Moreover,the discovery of extremophiles-organisms thriving in high-radiation,extreme heat,or vacuum environments-demonstrates that the boundaries of life far exceed Earth-like conditions(Rothschild&Mancinelli,2001).
