Licochalcone A(LCA)is a characteristic compound in licorice Glycyrrhiza inflata and is widely utilized in pharmaceutical and cosmetic industries.However,the biosynthetic pathway and regulatory mechanisms of LCA remain...Licochalcone A(LCA)is a characteristic compound in licorice Glycyrrhiza inflata and is widely utilized in pharmaceutical and cosmetic industries.However,the biosynthetic pathway and regulatory mechanisms of LCA remain poorly understood.In this study,we first found the accumulation of LCA is induced by methyl jasmonate(MeJA).Given that MYB transcriptional factors are well-documented as key regulators of flavonoid biosynthesis,we identified a total of 147 GiR2R3-MYB genes in G.inflata,which were classified into 28 subgroups.The chromosome distributions,sequence characteristics,gene structures,duplication events and cis-acting elements were also investigated.Through integrated analysis of GiR2R3-MYBs expression patterns across different tissues and under MeJA treatment,along with phylogenetic relationship,we identified GiMYB76—a MeJA-inducible MYB transcription factor—as a potential regulator of LCA accumulation.Functional validation showed that transgenic hairy roots overexpressing GiMYB76 exhibited a significant increase in LCA content.DAP-seq analysis of GiMYB76 revealed potential target genes involved in flavonoid biosynthesis regulation.Subsequent promoter activity assay verified that GiMYB76 can bind to the promoter and activate the expression of GiCHS4.Consistently,overexpression of GiCHS4 in G.inflata hairy roots also significantly enhanced LCA production.This study not only clarifies that GiMYB76 transcriptionally activated GiCHS4 to promote LCA biosynthesis but also provides valuable insights for basic research on licorice and the development of related industries.展开更多
Dry fig is a traditional healthy snack and has important economic value in a number of Mediterranean and Middle Eastern countries.Cultivars with no anthocyanin accumulation in the fruit peel are preferred for dry fig ...Dry fig is a traditional healthy snack and has important economic value in a number of Mediterranean and Middle Eastern countries.Cultivars with no anthocyanin accumulation in the fruit peel are preferred for dry fig production.R2R3-MYB transcription factors have promotive or repressive regulatory roles in plant anthocyanin biosynthesis.In this study,113 R2R3-MYB genes were identified in Ficus carica,3 of which were assigned to the S4 subfamily of flavonoid-biosynthesis repressors.FcMYB57 was further recruited as a candidate anthocyaninbiosynthesis repressor based on its sequence features and expression,which was significantly negatively correlated with that of anthocyanin-biosynthesis structural genes.Transient overexpression of FcMYB57 in strawberry totally inhibited fruit pigmentation and significantly increased fruit firmness.The metabolomic analysis confirmed a significant reduction in the contents of cyanidin-3-O-glucoside and pelargonidin-3-O-glucoside,as well as other flavonoids,and transmission electron microscopy revealed an increment in cell-wall thickness.Transcriptome analysis showed downregulation of anthocyanin-biosynthesis structural genes and upregulation of genes related to xylan synthesis.Yeast one-hybrid and dual luciferase assays demonstrated a negative regulatory effect of FcMYB57 on the promoter of FcUFGT3(UDP glucose-flavonoid 3-O-glcosyl-transferase).Yeast two-hybrid assay showed that FcMYB57 does not interact with FcbHLH42,3,14,MYC2,or FcTTG1,all of which have a previously identified or predicted role in flavonoid biosynthesis,however,interaction was detected with FcTPL(Topless),suggesting that FcMYB57 serves as an active repressor of anthocyanin biosynthesis.This is the first identification of an anthocyaninbiosynthesis repressor in fig,with a possible role in fig fruit quality.展开更多
Myeloblastosis(MYB)transcription factors,particularly those in the R2R3 MYB subclass,are pivotal in plant growth,development,and environmental stress responses.As one of the largest transcription factor families in pl...Myeloblastosis(MYB)transcription factors,particularly those in the R2R3 MYB subclass,are pivotal in plant growth,development,and environmental stress responses.As one of the largest transcription factor families in plants,the MYB family significantly regulates plant secondary metabolism,including the biosynthetic pathways for phenylpropanoids,which are crucial for stress resistance.This review presents a comprehensive overview of MYB transcription factor classification and their regulatory mechanisms in plant metabolism and stress responses.We discuss the roles of MYB transcription factors in biotic stress resistance,such as defense against pathogens and pests,and in abiotic stress tolerance,including responses to drought and salinity.Special attention is given to the interactions of R2R3 MYB with other transcription factors and co-repressors,focusing on how these synergistic or antagonistic relationships modulate physiological processes.The multifunctional role of R2R3 MYBs in stress responses positions them as promising targets for enhancing crop resilience through genetic breeding.Furthermore,this review highlights potential applications of MYB transcription factors in developing stress-resistant crops and their utility in plant resistant breeding programs.展开更多
Pear(Pyrus bretschneideri)fruit stone cells are primarily composed of lignin and have strongly lignified cell walls.The presence of stone cells has a negative influence on fruit texture and taste,and thus the reductio...Pear(Pyrus bretschneideri)fruit stone cells are primarily composed of lignin and have strongly lignified cell walls.The presence of stone cells has a negative influence on fruit texture and taste,and thus the reduction of stone cell content in pear fruit is a key goal of breeding efforts.However,research into the key transcription factors and regulatory networks associated with pear fruit stone cell formation have been limited.We here used a combination of co-expression network and expression quantitative trait locus(eQTL)analyses in 206 pear cultivars with different stone cell contents to identify relevant genes;these analyses uncovered the gene PbrMYB4,a R2R3 MYB transcription factor gene.There was a strong positive correlation between relative PbrMYB4 expression levels in the fruit flesh and stone cell/lignin contents.Overexpression of PbrMYB4 significantly increased the lignin contents,whereas silencing of PbrMYB4 had the opposite effect,decreasing the contents of lignin.PbrMYB4 overexpression in pear calli significantly promoted lignin biosynthesis.In Arabidopsis thaliana,PbrMYB4 overexpression resulted in increasing lignin deposition,cell wall thickness of vessels and xylary fiber,and accelerating expression level of lignin biosynthetic genes.PbrMYB4 was found to activate 4-Coumarate:Coenzyme A Ligase(Pbr4CL1)by binding to AC-I elements in the promoter regions,as demonstrated with dual-luciferase reporter assays and a yeast one-hybrid assay.These results demonstrated that PbrMYB4 positively regulated lignin biosynthesis in pear fruit stone cells by activating lignin biosynthesis genes.This study improves our understanding of the gene regulatory networks associated with stone cell formation in pear fruit,providing guidance for molecular breeding of pear varieties with low stone cell content.展开更多
基金supported by the Guangdong Basic and Applied Basic Research Foundation (2025A1515012679)Open Fund of Shanghai Key Laboratory of Plant Functional Genomics and Resources (PFGR202502)
文摘Licochalcone A(LCA)is a characteristic compound in licorice Glycyrrhiza inflata and is widely utilized in pharmaceutical and cosmetic industries.However,the biosynthetic pathway and regulatory mechanisms of LCA remain poorly understood.In this study,we first found the accumulation of LCA is induced by methyl jasmonate(MeJA).Given that MYB transcriptional factors are well-documented as key regulators of flavonoid biosynthesis,we identified a total of 147 GiR2R3-MYB genes in G.inflata,which were classified into 28 subgroups.The chromosome distributions,sequence characteristics,gene structures,duplication events and cis-acting elements were also investigated.Through integrated analysis of GiR2R3-MYBs expression patterns across different tissues and under MeJA treatment,along with phylogenetic relationship,we identified GiMYB76—a MeJA-inducible MYB transcription factor—as a potential regulator of LCA accumulation.Functional validation showed that transgenic hairy roots overexpressing GiMYB76 exhibited a significant increase in LCA content.DAP-seq analysis of GiMYB76 revealed potential target genes involved in flavonoid biosynthesis regulation.Subsequent promoter activity assay verified that GiMYB76 can bind to the promoter and activate the expression of GiCHS4.Consistently,overexpression of GiCHS4 in G.inflata hairy roots also significantly enhanced LCA production.This study not only clarifies that GiMYB76 transcriptionally activated GiCHS4 to promote LCA biosynthesis but also provides valuable insights for basic research on licorice and the development of related industries.
基金supported by the key research project for fig development of Weiyuan County(Grant No.1002-69199007),China.
文摘Dry fig is a traditional healthy snack and has important economic value in a number of Mediterranean and Middle Eastern countries.Cultivars with no anthocyanin accumulation in the fruit peel are preferred for dry fig production.R2R3-MYB transcription factors have promotive or repressive regulatory roles in plant anthocyanin biosynthesis.In this study,113 R2R3-MYB genes were identified in Ficus carica,3 of which were assigned to the S4 subfamily of flavonoid-biosynthesis repressors.FcMYB57 was further recruited as a candidate anthocyaninbiosynthesis repressor based on its sequence features and expression,which was significantly negatively correlated with that of anthocyanin-biosynthesis structural genes.Transient overexpression of FcMYB57 in strawberry totally inhibited fruit pigmentation and significantly increased fruit firmness.The metabolomic analysis confirmed a significant reduction in the contents of cyanidin-3-O-glucoside and pelargonidin-3-O-glucoside,as well as other flavonoids,and transmission electron microscopy revealed an increment in cell-wall thickness.Transcriptome analysis showed downregulation of anthocyanin-biosynthesis structural genes and upregulation of genes related to xylan synthesis.Yeast one-hybrid and dual luciferase assays demonstrated a negative regulatory effect of FcMYB57 on the promoter of FcUFGT3(UDP glucose-flavonoid 3-O-glcosyl-transferase).Yeast two-hybrid assay showed that FcMYB57 does not interact with FcbHLH42,3,14,MYC2,or FcTTG1,all of which have a previously identified or predicted role in flavonoid biosynthesis,however,interaction was detected with FcTPL(Topless),suggesting that FcMYB57 serves as an active repressor of anthocyanin biosynthesis.This is the first identification of an anthocyaninbiosynthesis repressor in fig,with a possible role in fig fruit quality.
基金supported by the Faculty Startup Fund from Jining Medical University,the Shandong Provincial Natural Science Foundation,China(Grant No.ZR2023QC309)the National Natural Science Foundation of China(Grant No.32102236)。
文摘Myeloblastosis(MYB)transcription factors,particularly those in the R2R3 MYB subclass,are pivotal in plant growth,development,and environmental stress responses.As one of the largest transcription factor families in plants,the MYB family significantly regulates plant secondary metabolism,including the biosynthetic pathways for phenylpropanoids,which are crucial for stress resistance.This review presents a comprehensive overview of MYB transcription factor classification and their regulatory mechanisms in plant metabolism and stress responses.We discuss the roles of MYB transcription factors in biotic stress resistance,such as defense against pathogens and pests,and in abiotic stress tolerance,including responses to drought and salinity.Special attention is given to the interactions of R2R3 MYB with other transcription factors and co-repressors,focusing on how these synergistic or antagonistic relationships modulate physiological processes.The multifunctional role of R2R3 MYBs in stress responses positions them as promising targets for enhancing crop resilience through genetic breeding.Furthermore,this review highlights potential applications of MYB transcription factors in developing stress-resistant crops and their utility in plant resistant breeding programs.
基金funded by the Science Foundation of China(Grant No.32230097)Earmarked Fund for China Agriculture Research System(Grant No.CARS-28)+2 种基金the Earmarked Fund for Jiangsu Agricultural Industry Technology System(Grant No.JATS[2023]412)Natural Science Foundation of Jiangsu Province for Young Scholar(Grant No.BK20221010)supported by the high-performance computing platform of Bioinformatics Center,Nanjing Agricultural University。
文摘Pear(Pyrus bretschneideri)fruit stone cells are primarily composed of lignin and have strongly lignified cell walls.The presence of stone cells has a negative influence on fruit texture and taste,and thus the reduction of stone cell content in pear fruit is a key goal of breeding efforts.However,research into the key transcription factors and regulatory networks associated with pear fruit stone cell formation have been limited.We here used a combination of co-expression network and expression quantitative trait locus(eQTL)analyses in 206 pear cultivars with different stone cell contents to identify relevant genes;these analyses uncovered the gene PbrMYB4,a R2R3 MYB transcription factor gene.There was a strong positive correlation between relative PbrMYB4 expression levels in the fruit flesh and stone cell/lignin contents.Overexpression of PbrMYB4 significantly increased the lignin contents,whereas silencing of PbrMYB4 had the opposite effect,decreasing the contents of lignin.PbrMYB4 overexpression in pear calli significantly promoted lignin biosynthesis.In Arabidopsis thaliana,PbrMYB4 overexpression resulted in increasing lignin deposition,cell wall thickness of vessels and xylary fiber,and accelerating expression level of lignin biosynthetic genes.PbrMYB4 was found to activate 4-Coumarate:Coenzyme A Ligase(Pbr4CL1)by binding to AC-I elements in the promoter regions,as demonstrated with dual-luciferase reporter assays and a yeast one-hybrid assay.These results demonstrated that PbrMYB4 positively regulated lignin biosynthesis in pear fruit stone cells by activating lignin biosynthesis genes.This study improves our understanding of the gene regulatory networks associated with stone cell formation in pear fruit,providing guidance for molecular breeding of pear varieties with low stone cell content.
