摘要
了解酸性和碱性酶稳定性机制并对其进行识别具有重要理论和实践意义。通过分析105条酸性酶和111条碱性酶序列的氨基酸组成,结果表明:酸性酶中Trp、Tyr、Thr和Ser的含量明显高于平均值,而Glu、Lys、Met和Arg的含量则明显低于平均值;碱性酶中Trp、Ala和Cys的含量略高于平均值,而Lys、Arg和Glu的含量则略低于平均值;酸性和碱性酶中Ala、Glu、Leu、Asn、Arg、Ser和Thr的含量存在较大差异。在此基础上,发展了一种加权氨基酸组成的方法对两种酶进行识别,其自一致性检验的识别精度可达86.1%,5倍交叉验证的精度为83.3%。建立了一种基于序列识别酸性和碱性酶的新方法。
It is of theoretical and practical significance to understand the mechanism of enzyme adaptation to acidic and alkaline environments and classification of them based on sequence information. In present work, the amino acid composition of 105 acidic and 111 alkaline enzyme sequences was systematically analyzed. Acidic enzymes contained significantly more Trp, Tyr, Thr and Ser, whereas less Glu, Lys, Met and Arg. On the other hand, alkaline enzymes have slightly more Trp, Ala and Cys, whereas less Lys, Arg and Glu. The amount of Ala, Glu, Leu, Asn, Arg, Ser and Thr in acidic and alkaline enzymes varied largely. Hence, a weighted amino acid composition method was developed for the discrimination of acidic and alkaline enzymes. Using the back-check and the 5-fold cross validation methods, the overall accuracy could reach 86.1% and 83.3%, respectively. A new method to classify acidic and alkaline enzymes based on their sequences was established.
出处
《生物工程学报》
CAS
CSCD
北大核心
2009年第1期95-100,共6页
Chinese Journal of Biotechnology
基金
国家重点基础研究发展规划("973计划")(No.2007CB707804)
国家自然科学基金项目(No.20806031)资助~~
关键词
酸性酶
碱性酶
识别
加权氨基酸组成
acidic enzyme, alkaline enzyme, discrimination, weighted amino acid composition
