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一种新的分子标记方法——随机微卫星扩增多态DNA(RMAPD) 被引量:18

A New Method of Molecular Marker——RMAPD
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摘要 随机微卫星扩增多态DNA(RMAPD)是利用随机引物和微卫星的上游或下游引物一起作为该扩增的引物,在TaqDNA聚合酶、MgC l2、dNTPs和模板DNA等共同作用下进行PCR扩增的一种新型分子标记方法。其核心是RMAPD引物的有效性问题。通过对西农萨能奶山羊群体RMAPD电泳检测、数据统计分析及验证实验等证明RMAPD的引物是有效的。通过与微卫星和RAPD标记比较,发现RMAPD标记在扩增引物、扩增程序和重复性等方面区别于微卫星和RAPD标记;它是RAPD标记的一种广义的延伸,但又不完全等同于RAPD标记。因此,确定RMAPD是一种新的分子标记方法。该方法也具有DNA标记的特点,在群体遗传结构和亲缘关系分析以及标记辅助选择等动物遗传育种领域具有广阔的应用前景。 Random microsatellite amplify polymorphic DNA (RMAPD) is a new method of molecular marker. It can reveal genome DNA polymorphisms of organism only when random primer and microsatellite forward or reverse primer are combined together as a pair of primers by the PCR reaction system with Taq DNA polymerase, MgCl2, dNTPs and contemplate DNA. The core question of RMAPD is validity of the primers used. A lot of experiments of RMAPD in 69 Xinong Saanen dairy goats showed that RMAPD primers were effective. Comparison of RMAPD, microsatellite and RAPD markers demonstrated that RMAPD was different from each other in primers, amplification protocol and repetition. RMAPD is not equal to RAPD, but a extendable RAPD. Therefore, RMAPD is regarded as a new method of molecular marker. As it has many characteristics of DNA marker, RMAPD has a widest potential application in animal breeding and genetics, such as analysis of genetic structure and relationship and MAS.
出处 《遗传》 CAS CSCD 北大核心 2006年第1期78-84,共7页 Hereditas(Beijing)
基金 国家自然科学基金(编号:30471238) 陕西省自然科学基金(编号:2004C122) 西北农林科技大学拔尖人才支持计划项目资助~~
关键词 RMAPD RAPD 微卫星标记 RAMP 分子标记 RMAPD RAPD microsatellite random amplify microsatellite polymorphisms(RAMP) molecular marker
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参考文献13

  • 1Willians J G, Rubelik A R, Livak K J, Rafalshi J A, Tingey S V.DNA polymorphisms amplified by arbitrary primers are useful genetic markers. Nucl Acid Res, 1990, 18 : 6513 - 6535.
  • 2Welsh J, Retersen L, McClellaed M. Polymorphism generated by arbitary primer PCR in the mouse:application to strain identification and genetic mapping. Nucl Acid Res, 1991, 19 (2):303-306.
  • 3H Chen, Leibenguth F. Studies on multilocus fingerprints, RAPD markers and mitochondrial DNA of a gynogenetic fish ( carassius auratus gibelio ) . Biochem Genet , 1995, 33: 297-306.
  • 4Skinner D M, Beattie W G, Blattner F R, Stark B P, Dahlberg J E. The sequence of a hermit crab satellite DNA is (TAGG)n-(ATCC)n- Biochemistry, 1974,13 : 3930 -3937.
  • 5Lanrent Pepin, Yves Amigues, Andree Leporgle, et al. Sequence conservation of microsatellites between Bos Taurus(cattle), capra hircus(goat) and related species, Examples of use in parcentage testing and phylogeny analysis. Heredity, 1995,74:53-61.
  • 6Levin L, Cheng H H, Baxterjones C, Hillel J. Turkey microsatellite DNA loci amplified by chicken-specific primers. Anim Genet,1995,26:107-110.
  • 7Wu K S, Jones R, Danncherger L, Scolnik P A. Detection of microsatellite polymophisms without cloning. Nucleic Acids Research, 1994, 22: 3527-3528.
  • 8P. J. Fisher, Gardner R C, Richardson T E. Single locus microsatellite isolated using 5' anchored PCR. Nucleic Acids Research, 1996,24(21):4369-4371.
  • 9Lynch M. The similarity index and DNA fingerprinting. Molecular Biological Evolution, 1990, 7(5) : 478-484.
  • 10陈宏,孙维斌,雷初朝,王敏强.RAPD标记稳定性的影响因素探析[J].西北农林科技大学学报(自然科学版),2003,31(5):139-142. 被引量:28

二级参考文献40

  • 1[1]Liang P, Pardee A B. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction.Science, 1992, 257 (5072): 967~971.
  • 2[2]Liang P,Pardee A B.Distribution and cloning of eukaryotic mRNAs by means of differential display: refinement sand optimization.Nucleic Acids Res, 1993, 21: 3269~3275.
  • 3[3]Liang P. Factors ensuring successful use of differential display. In Methods-A Companion to Methods in Enzymology.Academic Press.1998,361~364.
  • 4[4]Cho Y J, Prezioso V R, and Liang P. Systematic analysis of intrinsic factors affecting differential display.BioTechniques. 2002, 32: 762~766.
  • 5[5]The Web site of GenHunter is http://www.di- fferen tialdisplay.com.
  • 6[6]Sambrook J, Fritsch E F, and Maniatis T. Molecular Cloning: A Laboratory Manual, Second Edition (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY). 1989.
  • 7[7]Bauer D, Muller H, Reich J, Strauss M. Identification of differentially expressed mRNA species by an improved displays technique (DDRT-PCR).Nucleic Acids Res, 1993, 21: 4272~4280.
  • 8[8]Chomczynski P,Sacchi N.Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.Anal Biochem. 1987, 162: 156~159.
  • 9[9]Liang P, Pardee A B. Recent advances in differential display.Curr. Opin. Immunol. 1995, 7: 274~280.
  • 10[10]Doss R P. Differential display without radioactivity-a modified procedure.BioTechniques, 1996, 21: 410~412

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