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Study on the Mechanism of Nanopatterning in Printed Electronics Based on Molecular Dynamics Simulation
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作者 HUANG Hai-yang LI Yan ZHANG Run-liang 《印刷与数字媒体技术研究》 CAS 北大核心 2024年第4期237-244,共8页
In order to research the feasibility of using the selective adsorption principle to achieve automatic shaping of nano patterns,in this study,using the liquid gallium as the conductive ink and graphene as the printing ... In order to research the feasibility of using the selective adsorption principle to achieve automatic shaping of nano patterns,in this study,using the liquid gallium as the conductive ink and graphene as the printing plate surface,by changing the surface wettability of patterned areas on the nanoscale of graphene printed boards,the automatic formation of liquid gallium patterns on the graphene printed plate surface was simulated.The results indicated that liquid gallium can achieve automatic patterning on the surface of graphene patterned areas;the greater the interaction energy between gallium and carbon atoms,the clearer the pattern;gallium liquid is prone to remain in complex local positions of the pattern,making it difficult to shape the pattern;if the spacing between adjacent pattern lines is too large or too small,it will result in residual gallium liquid between the lines;increasing the thickness of the gallium film will cause the pattern to expand beyond the boundary,but increasing the thickness of the gallium film can also enhance the thickness and uniformity of the pattern lines.In summary,the principle of selective adsorption can be used to achieve the automatic formation of nano patterns,and the pattern formation effect is influenced by factors such as atomic interaction energy and pattern configuration. 展开更多
关键词 molecular dynamics Liquid gallium GRAPHENE pattern forming
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Honokiol-enhanced cytotoxic T lymphocyte activity against cholangiocarcinoma cells mediated by dendritic cells pulsed with damage-associated molecular patterns 被引量:7
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作者 Arunya Jiraviriyakul Worawat Songjang +3 位作者 Pongsathorn Kaewthet Phachsita Tanawatkitichai Punyapat Bayan Sutatip Pongcharoen 《World Journal of Gastroenterology》 SCIE CAS 2019年第29期3941-3955,共15页
BACKGROUND Cholangiocarcinoma or biliary tract cancer has a high mortality rate resulting from late presentation and ineffective treatment strategy. Since immunotherapy by dendritic cells (DC) may be beneficial for ch... BACKGROUND Cholangiocarcinoma or biliary tract cancer has a high mortality rate resulting from late presentation and ineffective treatment strategy. Since immunotherapy by dendritic cells (DC) may be beneficial for cholangiocarcinoma treatment but their efficacy against cholangiocarcinoma was low. We suggest how such antitumor activity can be increased using cell lysates derived from an honokioltreated cholangiocarcinoma cell line (KKU-213L5). AIM To increase antitumour activity of DCs pulsed with cell lysates derived from honokiol-treated cholangiocarcinoma cell line (KKU-213L5). METHODS The effect of honokiol, a phenolic compound isolated from Magnolia officinalis, on choangiocarcinoma cells was investigated in terms of the cytotoxicity and the expression of damage-associated molecular patterns (DAMPs). DCs were loaded with tumour cell lysates derived from honokiol-treated cholangiocarcinoma cells their efficacy including induction of T lymphocyte proliferation, proinflammatory cytokine production and cytotoxicity effect on target cholangiocarcinoma cells were evaluated. RESULTS Honokiol can effectively activate cholangiocarcinoma apoptosis and increase the release of damage-associated molecular patterns. DCs loaded with cell lysates derived from honokiol-treated tumour cells enhanced priming and stimulated T lymphocyte proliferation and type I cytokine production. T lymphocytes stimulated with DCs pulsed with cell lysates of honokiol-treated tumour cells significantly increased specific killing of human cholangiocarcinoma cells compared to those associated with DCs pulsed with cell lysates of untreated cholangiocarcinoma cells. CONCLUSION The present findings suggested that honokiol was able to enhance the immunogenicity of cholangiocarcinoma cells associated with increased effectiveness of DC-based vaccine formulation. Treatment of tumour cells with honokiol offers a promising approach as an ex vivo DC-based anticancer vaccine. 展开更多
关键词 CHOLANGIOCARCINOMA Dendritic cells HONOKIOL Damage-associated molecular patternS Tumor cell lysates
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Study on gene expression patterns and functional pathways of peripheral blood monocytes reveals potential molecular mechanism of surgical treatment for periodontitis 被引量:4
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作者 Jin-Ji Ma Hong-Mei Liu +2 位作者 Xiang-Hua Xu Li-Xin Guo Qing Lin 《World Journal of Clinical Cases》 SCIE 2019年第12期1383-1392,共10页
BACKGROUND Periodontitis is a chronic inflammation of periodontal supporting tissue caused by local factors. Periodontal surgery can change the gene expression of peripheral blood mononuclear cells. However, little is... BACKGROUND Periodontitis is a chronic inflammation of periodontal supporting tissue caused by local factors. Periodontal surgery can change the gene expression of peripheral blood mononuclear cells. However, little is known about the potential mechanism of surgical treatment for periodontitis. AIM To explore the potential molecular mechanism of surgical treatment for periodontitis. METHODS First, based on the expression profiles of genes related to surgical treatment for periodontitis, a set of expression disorder modules related to surgical treatment for periodontitis were obtained by enrichment analysis. Subsequently, based on crosstalk analysis, we proved that there was a significant crosstalk relationship between module 3 and module 5. Finally, based on predictive analysis of multidimensional regulators, we identified a series of regulatory factors, such as endogenous genes, non-coding RNAs (ncRNAs), and transcription factors, which have potential regulatory effects on periodontitis. RESULTS A total of 337 genes related to surgical treatment for periodontitis were obtained, and 3896 genes related to periodontitis were amplified. Eight expression modules of periodontitis were obtained, involving the aggregation of 2672 gene modules. These modules are mainly involved in G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger, and adenylate cyclasemodulating G-protein coupled receptor signaling pathway. In addition, eight endogenous genes (including EGF, RPS27A, and GNB3) were screened by network connectivity analysis. Finally, based on this set of potential dysfunction modules, 94 transcription factors (including NFKB1, SP1, and STAT3) and 1198 ncRNAs (including MALAT1, CRNDE, and ANCR) were revealed. These core regulators are thought to be involved in the potential molecular mechanism of periodontitis after surgical treatment. CONCLUSION Based on the results of this study, we can show biologists and pharmacists a new idea to reveal the potential molecular mechanism of surgical treatment for periodontitis, and provide valuable reference for follow-up treatment programs. 展开更多
关键词 Peripheral blood MONONUCLEAR cells GENE EXPRESSION DYSREGULATION module POTENTIAL molecular mechanism GENE EXPRESSION pattern
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Damage-associated molecular patterns in inflammatory bowel disease:From biomarkers to therapeutic targets 被引量:8
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作者 Hayandra Ferreira Nanini Claudio Bernardazzi +1 位作者 Fernando Castro Heitor Siffert Pereira de Souza 《World Journal of Gastroenterology》 SCIE CAS 2018年第41期4622-4634,共13页
The chronic inflammatory process underlying inflammatory bowel disease (IBD), comprising Crohn's disease and ulcerative colitis, derives from the interplay of several components in a genetically susceptible host. ... The chronic inflammatory process underlying inflammatory bowel disease (IBD), comprising Crohn's disease and ulcerative colitis, derives from the interplay of several components in a genetically susceptible host. These components include environmental elements and gut microbiota a dysbiosis. For decades, immune abnormalities have been investigated as critically important in IBD pathogenesis, and attempts to develop effective therapies have predominantly targeted the immune system. Nevertheless, immune events represent only one of the constituents contributing to IBD pathogenesis within the context of the complex cellular and molecular network underlying chronic intestinal inflammation. These factors need to be appreciated within the milieu of nonimmune components. Damage-associated molecular patterns (DAMPs), which are essentially endogenous stress proteins expressed or released as a result of cell or tissue damage, have been shown to act as direct proinflammatory mediators. Excessive or persistent signalling mediated by such molecules can underlie several chronic inflammatory disorders, including IBD. The release of endogenous DAMPs amplifies the inflammatory response driven by immune and non-immune cells and promotes epigenetic reprogramming in IBD.The effects determine pathologic changes,which may sustain chronic intestinal inflammation and also underlie specific disease phenotypes.In addition to highlighting the potential use of DAMPs such as calprotectin as biomarkers,research on DAMPs may reveal novel mechanistic associations in IBD pathogenesis and is expected to uncover putative therapeutic targets. 展开更多
关键词 Damage-associated molecular patterns Environmental factors EPIGENETICS Inflammatory bowel disease Therapeutic targets
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Molecular test shows the color pattern is not so reliable in diagnostic of genus Dysphaea Selys(Odonata:Euphaeidae) 被引量:1
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作者 Yao Ji Xin Yu 《Zoological Systematics》 CSCD 2019年第2期91-99,共9页
A molecular study based on COI, 16S and 28S genes reveals that a batch of specimens(7 males and 4 females) of Dysphaea Selys, 1853 collected from central Vietnam,which include different color patterns of wings and bod... A molecular study based on COI, 16S and 28S genes reveals that a batch of specimens(7 males and 4 females) of Dysphaea Selys, 1853 collected from central Vietnam,which include different color patterns of wings and body, and were originally identified as three different species, are all the same species. This study implies that, in some group of Odonata,identification only depending on color pattern may be unreliable, no matter what huge variations there are. 展开更多
关键词 ODONATA DRAGONFLY WING color pattern variation molecular PHYLOGENY
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MOLECULAR WEIGHT DEPENDENCE OF CRYSTAL PATTERN TRANSITIONS OF POLY(ETHYLENE OXIDE) 被引量:1
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作者 Guo-liang Zhang Liu-xin Jin +2 位作者 Ping Zheng 王维 Xiao-jing Wen 《Chinese Journal of Polymer Science》 SCIE CAS CSCD 2013年第5期798-808,共11页
Crystal patterns in ultrathin films of six poly(ethylene oxide) fractions with molecular weights from 25000 to 932000 g/mol were characterized within crystallization temperature range from 20 ℃to 60℃. Labyrinthine... Crystal patterns in ultrathin films of six poly(ethylene oxide) fractions with molecular weights from 25000 to 932000 g/mol were characterized within crystallization temperature range from 20 ℃to 60℃. Labyrinthine, dendritic and faceted crystal patterns were observed in different temperature ranges, and then labyrinthine-to-dendritic and dendritic-to- faceted transition temperatures T_L-D and T_D-F were quantitatively identified. Their molecular weight dependences are T_L-D(M_w) = T_L-D(∞) -K_L-D/M_w, where T_L-D(∞) = 38.2 ℃ and K_L-D = 253000 ℃.g/mol and T_D-F(M_w) = T_D-F(∞) -K_D-F/M_w, where T_D-F(∞) = 54.7 ℃ and K_D-F= 27000 ℃.g/mol. Quasi two-dimensional blob models were proposed to provide empirical explanations of the molecular weight dependences. The labyrinthine-to-dendritic transition is attributed to a molecular diffusion process change from a local-diffusion to diffusion-limited-aggregation (DLA) and a polymer chain with M_w ≈253000 g/mol within a blob can join crystals independently. The dendritic-to-faceted transition is attributed to a turnover of the pattern formation mechanism from DLA to crystallization control, and a polymer chain with a M_w ≈27000 g/tool as an independent blob crosses to a depletion zone to join crystals. These molecular weight dependences reveal a macromolecular effect on the crystal pattern formation and selection of crystalline polymers. 展开更多
关键词 Poly(ethylene oxide) CRYSTALLIZATION pattern formation TRANSITION molecular weight dependence.
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Potential of damage associated molecular patterns in synergising radiation and the immune response in oesophageal cancer
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作者 Noel E Donlon Maria Davern +13 位作者 Andrew Sheppard Fiona O'Connell Brendan Moran Timothy S Nugent Aisling Heeran James J Phelan Anshul Bhardwaj Christine Butler Narayanasamy Ravi Claire L Donohoe Niamh Lynam-Lennon Stephen Maher John V Reynolds Joanne Lysaght 《World Journal of Gastrointestinal Oncology》 SCIE 2023年第8期1349-1365,共17页
BACKGROUND There is an intimate crosstalk between cancer formation,dissemination,treatment response and the host immune system,with inducing tumour cell death the ultimate therapeutic goal for most anti-cancer treatme... BACKGROUND There is an intimate crosstalk between cancer formation,dissemination,treatment response and the host immune system,with inducing tumour cell death the ultimate therapeutic goal for most anti-cancer treatments.However,inducing a purposeful synergistic response between conventional therapies and the immune system remains evasive.The release of damage associated molecular patterns(DAMPs)is indicative of immunogenic cell death and propagation of established immune responses.However,there is a gap in the literature regarding the importance of DAMP expression in oesophageal adenocarcinoma(OAC)or by immune cells themselves.AIM To investigate the effects of conventional therapies on DAMP expression and to determine whether OAC is an immunogenic cancer.METHODS We investigated the levels of immunogenic cell death-associated DAMPs,calreticulin(CRT)and HMGB1 using an OAC isogenic model of radioresistance.DAMP expression was also assessed directly using ex vivo cancer patient T cells(n=10)and within tumour biopsies(n=9)both pre and post-treatment with clinically relevant chemo(radio)therapeutics.RESULTS Hypoxia in combination with nutrient deprivation significantly reduces DAMP expression by OAC cells in vitro.Significantly increased frequencies of T cell DAMP expression in OAC patients were observed following chemo-(radio)therapy,which was significantly higher in tumour tissue compared with peripheral blood.Patients with high expression of HMGB1 had a significantly better tumour regression grade(TRG 1-2)compared to low expressors.CONCLUSION In conclusion,OAC expresses an immunogenic phenotype with two distinct subgroups of high and low DAMP expressors,which correlated with tumour regression grade and lymphatic invasion.It also identifies DAMPs namely CRT and HMGB1 as potential promising biomarkers in predicting good pathological responses to conventional chemo(radio)therapies currently used in the multimodal management of locally advanced disease. 展开更多
关键词 Damage associated molecular patterns HMGB1 CALRETICULIN Oesophageal adenocarcinoma T cells RADIATION
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Nanoindentation Models of Monolayer Graphene and Graphyne under Point Load Pattern Studied by Molecular Dynamics
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作者 向浪 吴建 +2 位作者 马双英 王芳 张凯旺 《Chinese Physics Letters》 SCIE CAS CSCD 2015年第9期108-111,共4页
Molecular dynamics simulations are performed to study the nanoindentation models of monolayer suspended graphene and graphyne. Fullerenes are selected as indenters. Our results show that Young's modulus of monolayer-... Molecular dynamics simulations are performed to study the nanoindentation models of monolayer suspended graphene and graphyne. Fullerenes are selected as indenters. Our results show that Young's modulus of monolayer-thick graphyne is almost half of that of graphene, which is estimated to be 0.50 TPa. The mechanical properties of graphene and graphyne are different in the presence of strain. A pre-tension has an important effect on the mechanical properties of a membrane. Both the pre-tension and Young's modulus plots demonstrate index behavior. The toughness of graphyne is stronger than that of graphene due to Young's modulus magnitude. Young's moduli of graphene and graphyne are almost independent of the size ratio of indenter to membrane. 展开更多
关键词 Nanoindentation Models of Monolayer Graphene and Graphyne under Point Load pattern Studied by molecular Dynamics
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病原真菌CFEM蛋白功能及分子机制研究进展 被引量:1
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作者 王艳玲 郭勇 高洁 《华中农业大学学报》 北大核心 2025年第1期156-167,共12页
CFEM (common in fungi extracellular membrane)蛋白是仅存在于真菌的一种细胞外膜蛋白,在真菌中往往起到效应子的作用。本文阐述了不同病原真菌CFEM蛋白的结构、起源、进化及其作用和分子机制,强调了致病性真菌中CFEM蛋白在获取铁元... CFEM (common in fungi extracellular membrane)蛋白是仅存在于真菌的一种细胞外膜蛋白,在真菌中往往起到效应子的作用。本文阐述了不同病原真菌CFEM蛋白的结构、起源、进化及其作用和分子机制,强调了致病性真菌中CFEM蛋白在获取铁元素、维护真菌细胞壁完整性、影响真菌生长发育、侵染结构形成及引发宿主免疫反应等方面的重要作用。同时对扩展青霉的CFEM蛋白进行生物信息学分析,并针对未来CFEM蛋白在侵染致病中的作用及分子机制等研究进行讨论和展望。旨在进一步解析CFEM蛋白在侵染致病中的作用和分子机理,为防控植物病原真菌病害提供理论基础和参考。 展开更多
关键词 CFEM效应蛋白 病原真菌 病原体相关分子模式 信号肽
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Hepatocyte-intrinsic innate immunity in hepatitis B virus infection:A focused review
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作者 Ping Chen Jing Zhao +1 位作者 Ning-Kai Chen Zhi-Ying Chen 《World Journal of Hepatology》 2025年第6期50-59,共10页
Chronic hepatitis B virus(HBV)infection remains a major health burden worldwide.To establish a persistence infection,HBV needs to evade both adaptive and innate immune surveillance.Multiple mechanisms for adaptive imm... Chronic hepatitis B virus(HBV)infection remains a major health burden worldwide.To establish a persistence infection,HBV needs to evade both adaptive and innate immune surveillance.Multiple mechanisms for adaptive immunity evasion have been established,but how HBV evades the innate surveillance is less clear.There are three types of host cells involving in the innate immune responses against HBV infection:Hepatocytes,hepatic nonparenchymal cells and conventional innate immune cells.Among these,hepatocytes are the only target cells that are susceptible to HBV infection and the only confirmed site where HBV replication takes place.This review focuses on the hepatocyte-intrinsic innate immunity;one of the earliest host defense responses.After entering hepatocytes,the viral components can be sensed by the cellular pattern recognition receptors.This triggers downstream antiviral responses capable of inhibiting viral replication and even degrading the viral DNA genome directly or indirectly.However,HBV has evolved a variety of sophisticated strategies to evade intracellular immune defense,resulting in the establishment of infection.Here,we provide insights into the mechanisms of the intrinsic innate immune response of hepatocytes and how HBV escapes these defense mechanisms.Hopefully,this will lay the foundation for the development of novel anti-HBV therapies. 展开更多
关键词 Hepatitis B virus Innate immunity Immune evasion Pathogen recognition receptors pathogen-associated molecular patterns
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西方蜜蜂ATG5基因的克隆、分析及时空表达谱测定
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作者 吴伯文 范小雪 +4 位作者 刘彩珍 冯睿蓉 付志英 吴杨 郭睿 《应用昆虫学报》 北大核心 2025年第2期371-380,共10页
【目的】对西方蜜蜂Apis mellifera自噬相关基因5(Autophagy related gene 5,AmATG5)进行分子克隆和生物信息学分析,并检测AmATG5在工蜂7个组织和7个发育时间的表达谱,为进一步探究AmATG5的功能提供详实的参考依据。【方法】通过PCR扩增... 【目的】对西方蜜蜂Apis mellifera自噬相关基因5(Autophagy related gene 5,AmATG5)进行分子克隆和生物信息学分析,并检测AmATG5在工蜂7个组织和7个发育时间的表达谱,为进一步探究AmATG5的功能提供详实的参考依据。【方法】通过PCR扩增AmATG5的编码序列(Coding sequence,CDS)并进行Sanger测序验证。使用相关软件预测和分析AmATG5蛋白的理化性质、分子特征、保守基序、高级结构和蛋白互作网络。通过核质分离与RT-qPCR验证AmATG5的亚细胞定位。采用RT-qPCR检测AmATG5的相对表达水平。【结果】成功克隆到AmATG5的CDS;AmATG5含265个氨基酸,相对分子量约为31.41 kD,分子式为C_(1428)H_(2168)N_(372)O_(403)S_(13),含31个磷酸化位点和7个保守基序,不含跨膜结构域和信号肽;AmATG5 mRNA主要分布于细胞质;AmATG5与小蜜蜂Apis florea的ATG5在进化树上聚为一支;AmATG5包含110个无规则卷曲,93个α-螺旋,48条延伸链和14个β-转角;AmATG5与自噬相关蛋白1和自噬相关蛋白6等9个蛋白构成1个互作网络;AmATG5在工蜂的毒腺、中肠、咽下腺、脂肪体、脑、触角和表皮7个组织中差异表达,在脑中的表达量最高,而在表皮中的表达量最低;AmATG5的表达量在卵、1、3和5日龄幼虫阶段持续下降,在8日龄预蛹、11和16日龄蛹阶段持续上升,至16日龄蛹时达到最高。【结论】AmATG5为疏水性蛋白和胞内蛋白,通过与ATG6等9个蛋白潜在互作发挥作用;AmATG5在西方蜜蜂工蜂的不同组织和不同发育阶段动态差异表达,在脑和16日龄蛹中特异性高表达。 展开更多
关键词 西方蜜蜂 自噬 自噬相关基因5 分子特征 系统进化 表达谱
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中华蜜蜂14-3-3ζ基因的克隆、分子特征及时空表达谱分析
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作者 陈颖 康婧 +8 位作者 臧贺 王勇杰 张凯遥 叶道有 冯睿蓉 陈大福 徐国钧 郭睿 邱剑丰 《昆虫学报》 北大核心 2025年第8期1031-1039,共9页
【目的】本研究旨在丰富中华蜜蜂Apis cerana cerana 14-3-3ζ基因的基本信息,为其进一步的功能研究提供参考和依据。【方法】通过PCR扩增14-3-3ζ基因的编码序列(coding sequence,CDS),再进行TA克隆和Sanger测序;使用相关软件预测14-3-... 【目的】本研究旨在丰富中华蜜蜂Apis cerana cerana 14-3-3ζ基因的基本信息,为其进一步的功能研究提供参考和依据。【方法】通过PCR扩增14-3-3ζ基因的编码序列(coding sequence,CDS),再进行TA克隆和Sanger测序;使用相关软件预测14-3-3ζ的理化性质和分子特征,并对14-3-3ζ进行系统进化分析;利用RT-qPCR检测14-3-3ζ基因在中华蜜蜂不同发育阶段(卵、幼虫、预蛹、蛹和成虫)、刚出房工蜂成虫不同组织(触角、中肠、脂肪体、咽下腺、脑、表皮和毒腺)及蜜蜂球囊菌Ascospaera apis接种中华蜜蜂工蜂3日龄幼虫后4,5和6日龄幼虫肠道中的表达量。【结果】成功克隆到中华蜜蜂14-3-3ζ基因的CDS,含744个核苷酸,编码247个氨基酸,中华蜜蜂14-3-3ζ的分子量约为28.0 kD,含26个磷酸化位点、4个结构域和1个保守基序,不含跨膜结构域与信号肽;中华蜜蜂、西方蜜蜂Ap.mellifera、黑大蜜蜂Ap.laboriosa、小蜜蜂Ap.florea、芦蜂Ceratina calcarata、火红熊蜂Bombus pyrosoma、地熊蜂B.terrestris、苜蓿切叶蜂Megachile rotundata、壁蜂Osmia lignaria和东南蓝莓蜂Habropoda laboriosa 14-3-3ζ均包含4个相同的保守基序和1个相同的结构域(14-3-3_1),中华蜜蜂和西方蜜蜂的14-3-3ζ在系统进化树上聚为一支。14-3-3ζ基因在中华蜜蜂卵中的表达量显著高于3日龄幼虫、1和2日龄预蛹及4日龄蛹中的表达量,在中华蜜蜂各日龄工蜂成虫体内的表达量无显著差异;14-3-3ζ基因的表达量在中华蜜蜂刚出房工蜂成虫毒腺中最高,且显著高于触角、中肠、咽下腺、脑、表皮和脂肪体中的表达量;蜜蜂球囊菌接种中华蜜蜂工蜂3日龄幼虫后,14-3-3ζ基因在中华蜜蜂工蜂4,5和6日龄幼虫肠道中的表达量与对照组比显著下调。【结论】中华蜜蜂14-3-3ζ基因在工蜂的毒腺和卵中特异性高量表达,幼虫肠道中14-3-3ζ基因的表达在蜜蜂球囊菌侵染过程中被激活,14-3-3ζ是一种潜在的亲水性、非跨膜和胞内蛋白,中华蜜蜂与上述其他10种蜂的14-3-3ζ较为保守,中华蜜蜂和西方蜜蜂的14-3-3ζ之间亲缘关系最近。 展开更多
关键词 中华蜜蜂 14-3-3 分子特征 表达模式 蜜蜂球囊菌
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基于网络药理学方法和分子对接技术探讨中药治疗肌少症的用药规律及作用机制
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作者 王楠 李程 +6 位作者 邱凤喜 薛艳 刘树森 刘永铭 黄韦杰 张胜男 石瑛 《四川中医》 2025年第5期93-102,共10页
目的基于文献数据挖掘方法对中药治疗肌少症组方用药规律进行分析,并应用网络药理学方法和分子对接技术探讨高频中药组合治疗肌少症的潜在靶点及其可能机制,为临床用药及新药研发提供思路。方法分别检索中国知网(CNKI)、中文科技期刊全... 目的基于文献数据挖掘方法对中药治疗肌少症组方用药规律进行分析,并应用网络药理学方法和分子对接技术探讨高频中药组合治疗肌少症的潜在靶点及其可能机制,为临床用药及新药研发提供思路。方法分别检索中国知网(CNKI)、中文科技期刊全文数据库(VIP)、中国学术期刊数据库(万方)和中国生物医学数据库(SinoMed)中关于中药治疗肌少症的文献,运用中医传承辅助平台分析中药治疗肌少症的高频中药组合。并从TCMSP数据库和OMIM等数据库中分别获取中药与肌少症相关的靶点,对获取的关键靶点进行蛋白互作分析、GO功能富集分析及KEGG通路富集分析,最后使用AutoDock软件进行分子对接验证。结果研究共纳入162篇文献,165首处方,188味中药;数据挖掘显示使用频次≥20次的药物有17味,排在前10位的中药分别为白术、黄芪、当归、甘草、茯苓、党参、熟地黄、陈皮、人参、山药;中药归经以脾经(891次)最多,肝经(648次)次之。四气五味以甘味药(1025次)、温性药占比最高(758次)。基于关联规则分析得到核心药物组合18个,其中最高频组合为茯苓-党参-白术。茯苓-党参-白术药物组合与肌少症的交集靶点共186个,在“中药-疾病-有效成分-靶点”网络图中,核心有效成分包括白术内酯Ⅰ、白术内酯Ⅱ、白术内酯Ⅲ、茯苓酸、党参炔苷,党参苷Ⅰ。PPI网络分析得出核心靶点为AKT1、INS、IL6和TNF。GO富集分析表明茯苓-党参-白术药物组合可能通过对细胞外刺激的反应、对肽的反应、对营养水平的反应等途径治疗肌少症。KEGG富集分析结果提示茯苓-党参-白术药物组合的治疗有效性可能与PI3K-Akt信号通路、JAK-STAT信号通路和HIF-1信号通路等有关。分子对接结果显示,结合能绝对值排名前三的成分分别为:茯苓酸和TNF(−9.15kcal/mol)、党参苷I和AKT1(−9.13kcal/mol)、党参苷I和TNF(−9.05kcal/mol)。结论中药治疗肌少症多着眼于脾、肝二脏,治则以健脾益气为主,兼顾活血化瘀;其高频药物组合(茯苓-党参-白术)的作用机制可能涉及白术内酯Ⅰ、白术内酯Ⅱ、白术内酯Ⅲ、茯苓酸、党参炔苷,党参苷Ⅰ等有效成分,这些成分可能通过调节PI3K-Akt、JAK-STAT和HIF-1等多条信号通路,从而影响AKT1、INS、IL6和TNF等相关靶点,以治疗肌少症。 展开更多
关键词 肌少症 痿证 用药规律 网络药理学 分子对接技术
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哌甲酯靶点导向的网络药理学研究:揭示中药治疗注意缺陷多动障碍的分子机制与用药规律
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作者 彭静 刘林慧 +2 位作者 高萍 李梦婷 李巧玲 《药物评价研究》 北大核心 2025年第9期2507-2517,共11页
目的通过哌甲酯靶点导向的中药网络药理学方法,探讨中药治疗注意缺陷多动障碍(ADHD)的分子机制和用药规律。方法采用网络药理学方法,通过SwissTargetPrediction和多个数据库预测哌甲酯与ADHD的共同靶基因,基于ADME参数和Lipinski规则筛... 目的通过哌甲酯靶点导向的中药网络药理学方法,探讨中药治疗注意缺陷多动障碍(ADHD)的分子机制和用药规律。方法采用网络药理学方法,通过SwissTargetPrediction和多个数据库预测哌甲酯与ADHD的共同靶基因,基于ADME参数和Lipinski规则筛选作用于共同靶基因的化合物。利用GeneMANIA和Cytoscape构建蛋白质-蛋白质相互作用(PPI)网络,Biozeron Cloud Platform进行基因本体(GO)和京都基因与基因组百科全书(KEGG)分析,揭示靶基因功能。构建“靶基因-化合物-中药”网络,筛选候选中药,分析候选中药属性和功能,并采用微词云平台进行数据可视化。结果共识别出49个哌甲酯与ADHD的共同靶基因。共同靶基因PPI网络和GO/KEGG分析揭示了神经系统和神经递质信号传递的关键通路。筛选出567个化合物和416个候选中药。构建的网络图识别出甘草、丹参等与ADHD治疗相关的高频中药,通过对候选中药的性、味、归经和功能的频次分析,发现候选药物性味以苦、寒为主,归经以肝、肺、胃较为突出,清热、解毒、止痛、消肿等功能频繁出现。结论以哌甲酯治疗ADHD的靶点为导向,运用中药网络药理学的方法,逆向解析了治疗ADHD的分子机制和用药规律。候选药物显示出多成分、多靶点、多路径治疗ADHD的潜力,为ADHD的临床和基础研究的深入探索提供了新的思路。 展开更多
关键词 哌甲酯 注意缺陷多动障碍 中药 分子机制 用药规律 网络药理学
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东方蜜蜂基质金属蛋白酶14基因AcMMP 14的分子特征与表达模式 被引量:2
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作者 刘治滩 叶道有 +8 位作者 宓诗雨 王宁 郑一荻 蒋海宾 吴鹰 徐细建 陈大福 邱剑丰 郭睿 《昆虫学报》 北大核心 2025年第3期282-290,共9页
【目的】本研究旨在克隆东方蜜蜂Apis cerana基质金属蛋白酶14(matrix metalloproteinase-14,MMP14)基因AcMMP 14,分析其分子特征和表达模式,为持续深入开展AcMMP 14的功能研究提供参考和依据。【方法】提取东方蜜蜂6日龄工蜂幼虫肠道总... 【目的】本研究旨在克隆东方蜜蜂Apis cerana基质金属蛋白酶14(matrix metalloproteinase-14,MMP14)基因AcMMP 14,分析其分子特征和表达模式,为持续深入开展AcMMP 14的功能研究提供参考和依据。【方法】提取东方蜜蜂6日龄工蜂幼虫肠道总RNA,PCR扩增AcMMP 14的编码序列(coding sequence,CDS)。使用相关生物信息学软件预测AcMMP14的理化性质和分子特征,鉴定东方蜜蜂和其他蜂种MMP14的结构域和保守基序,并进行系统进化分析。采用RT-qPCR检测AcMMP 14在工蜂卵、幼虫、预蛹、蛹和不同日龄成虫,工蜂成虫触角、脑、表皮、脂肪体、毒腺、中肠和咽下腺及东方蜜蜂微孢子虫Nosema ceranae接种刚出房的1日龄工蜂后1-4 d时中肠中的相对表达量。【结果】AcMMP14的分子式为C 3068 H 4581 N 803 O 915 S 20,分子量约为68.00 kD,脂溶系数为64.12,等电点为5.85,平均亲水系数为-0.47,含1个信号肽和36个磷酸化位点,可同时定位于线粒体、细胞核和细胞质。东方蜜蜂与其他10种蜂的MMP14中均含有3个相同的结构域和5个相同的保守基序。东方蜜蜂与大蜜蜂A.dorsata的MMP14的氨基酸序列一致性达94.23%,且在进化树上聚为一支。AcMMP 14在东方蜜蜂工蜂卵、3日龄幼虫、1和2日龄预蛹及4日龄蛹中差异表达,在4日龄蛹中的表达量最高且显著高于3日龄幼虫和2日龄预蛹中的表达量。AcMMP 14在不同日龄工蜂成虫体内差异表达,在15日龄成虫体内的表达量最高且显著高于1,2,6,12和17日龄成虫体内的表达量。AcMMP 14在东方蜜蜂工蜂成虫的7种不同组织中差异表达,在触角中的表达量最高且显著高于脑、表皮、脂肪体、毒腺、中肠和咽下腺中的表达量。与未接种的对照组相比,东方蜜蜂微孢子虫接种后1和2 d时工蜂成虫中肠中AcMMP14的表达量显著下调,3和4 d时工蜂成虫中肠中AcMMP14的表达量下调但差异不显著。【结论】AcMMP14为潜在的亲水性蛋白和分泌蛋白;AcMMP 14在东方蜜蜂工蜂不同发育阶段和成虫组织中发挥潜在的重要功能;工蜂成虫中肠中AcMMP 14在东方蜜蜂微孢子虫的第一个增殖周期前期被激活表达。 展开更多
关键词 东方蜜蜂 基质金属蛋白酶 东方蜜蜂微孢子虫 表达模式 分子特征
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西方蜜蜂AmSTPKD3蛋白的分子特征与基因表达模式 被引量:1
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作者 董舒楠 邹培缘 +8 位作者 任亚萍 杜丽婷 李坤泽 臧贺 邱剑丰 周彤 傅佳妮 陈大福 郭睿 《西北农林科技大学学报(自然科学版)》 北大核心 2025年第6期29-36,共8页
[目的]对西方蜜蜂(Apis mellifera)的丝氨酸/苏氨酸蛋白激酶(AmSTPKD3)进行生物信息学分析,测定AmSTPKD3基因在西方蜜蜂工蜂的组织和发育阶段的表达模式,为AmSTPKD3的功能研究提供科学依据。[方法]利用相关生物信息学软件,预测AmSTPKD3... [目的]对西方蜜蜂(Apis mellifera)的丝氨酸/苏氨酸蛋白激酶(AmSTPKD3)进行生物信息学分析,测定AmSTPKD3基因在西方蜜蜂工蜂的组织和发育阶段的表达模式,为AmSTPKD3的功能研究提供科学依据。[方法]利用相关生物信息学软件,预测AmSTPKD3的理化性质和分子特征,鉴定西方蜜蜂和其他物种(黑大蜜蜂(Apis laboriosa)、欧洲雄蜂(Bombus terrestris)、大蜜蜂(Apis dorsata)、小蜜蜂(Apis florea)、田野熊蜂(Bombus pascuorum)、东方蜜蜂(Apis cerana)、美洲东部熊蜂(Bombus impatiens)和巴西无刺蜜蜂(Frieseomelitta varia))STPKD3的结构域和保守基序。通过Mega 11.0软件对西方蜜蜂和其他物种的STPKD3进行系统进化分析。采用RT-qPCR方法,检测AmSTPKD3在西方蜜蜂不同组织(触角、毒腺、脑、中肠、脂肪体、表皮和咽下腺)和发育阶段(卵、3日龄幼虫、7和8日龄预蛹、12日龄蛹及1,2,6,12,15和18日龄成虫)的相对表达量。[结果]AmSTPKD3包含3 269个核苷酸,可编码831个氨基酸。AmSTPKD3的分子式为C4141H6511N1155O1283S40,分子质量约为94.29 ku,脂溶系数为77.36,等电点为6.09,平均亲水系数为-0.510,有99个磷酸化位点,但不含跨膜结构域和信号肽。在西方蜜蜂和其他8种蜜蜂的STPKD3中均鉴定到4个相同结构域和5个相同保守基序。西方蜜蜂与东方蜜蜂的STPKD3在进化树上聚为一支。AmSTPKD3在西方蜜蜂工蜂的触角、毒腺、脑、中肠、脂肪体、表皮和咽下腺中差异表达,在咽下腺中的表达量最高,且显著高于脑、中肠、脂肪体和表皮;AmSTPKD3在卵、3日龄幼虫、7和8日龄预蛹及12日龄蛹中差异表达,在卵和8日龄预蛹中的表达量相近,且显著高于3日龄幼虫和12日龄蛹;AmSTPKD3在1,2,6和12日龄成虫体内差异表达,在1日龄成虫体内的表达量最高且显著高于15和18日龄成虫。[结论]AmSTPKD3是潜在的亲水性蛋白和胞内蛋白,西方蜜蜂和其他9种蜂的STPKD3具有较高的保守性,西方蜜蜂与东方蜜蜂STPKD3的同源性最高,AmSTPKD3在西方蜜蜂工蜂的不同组织和发育阶段呈现动态差异表达。 展开更多
关键词 西方蜜蜂 丝氨酸/苏氨酸蛋白激酶 理化性质 分子特征 系统进化 时空表达谱
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鳗弧菌及脂多糖刺激下大菱鲆肝脾凝集素和Toll样受体基因的时序表达分析
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作者 苟冬惠 孙志宾 +6 位作者 马爱军 田蜜 王新安 黄智慧 孙伟恒 朱春月 刘志峰 《海洋与湖沼》 北大核心 2025年第4期989-1001,共13页
凝集素和Toll样受体对激活先天免疫系统以应对入侵的病原体至关重要,为探究革兰氏阴性菌鳗弧菌、灭活鳗弧菌以及LPS刺激大菱鲆PAMP识别受体基因的免疫应答机制,以平均体质量为(19.37±4.31)g、平均体长为(10.71±0.69)cm的大菱... 凝集素和Toll样受体对激活先天免疫系统以应对入侵的病原体至关重要,为探究革兰氏阴性菌鳗弧菌、灭活鳗弧菌以及LPS刺激大菱鲆PAMP识别受体基因的免疫应答机制,以平均体质量为(19.37±4.31)g、平均体长为(10.71±0.69)cm的大菱鲆为实验对象,分别于免疫后0、12、24、48、72和96 h采集肝和脾组织,提取总RNA,采用qPCR检测肝脏和脾脏中LEC、SAP、TLR5M、TLR14基因的表达水平。结果显示:在肝脏中,活菌刺激下LEC、SAP、TLR5M和TLR14基因与对照组相比均呈上调表达,上调表达高峰均在0~24 h,基因表达量最高值是对照组的14~3857倍;灭活菌和LPS刺激下LEC、TLR5M和TLR14基因与对照组相比均呈上调表达,表达高峰分别在24~72 h和48~72 h,最高表达量分别是对照组的52~447倍和18~184倍。在脾脏中,活菌刺激下LEC和TLR14基因与对照组相比均呈上调表达,上调表达高峰均在0~24 h,基因表达量最高值是对照组的5~223倍;灭活菌和LPS刺激下LEC、SAP和TLR14基因与对照组相比均呈上调表达,LEC和SAP表达高峰在0~12 h,TLR14表达高峰在48~72 h,最高表达量分别是对照组的4~28倍和2~68倍,其他基因表现为显著下调或无明显变化。研究结果表明:不同免疫刺激能引起肝脏和脾脏PAMP识别受体基因的快速变化,并且这些基因的表达变化具有组织特异性。免疫后肝脏和脾脏在0~72 h中,可用更为简单的免疫增强剂LPS或灭活菌代替活菌注射,通过LEC、SAP、TLR5M和TLR14 PAMP识别受体基因表达作为评价指标。研究结果可为抗鳗弧菌新品种选育和海水鱼类免疫增强剂筛选提供理论依据。 展开更多
关键词 病原相关分子模式 模式识别受体 凝集素 Toll样受体 革兰氏阴性菌 鳗弧菌
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基于谱效关联分析及生物信息学的积雪草抗氧化质量标志物研究
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作者 祁昱彤 彭勍 +4 位作者 孟硕 林力 任钧国 张淼 刘建勋 《中国药学杂志》 北大核心 2025年第7期727-738,共12页
目的建立积雪草指纹图谱,研究积雪草与抗氧化活性的谱效关系,结合网络药理学和分子对接技术,筛选积雪草质量标志物(Q-marker),为积雪草质量评价提供科学依据。方法采用HPLC法建立16批积雪草药材指纹图谱,基于共有峰峰面积结果,借助聚类... 目的建立积雪草指纹图谱,研究积雪草与抗氧化活性的谱效关系,结合网络药理学和分子对接技术,筛选积雪草质量标志物(Q-marker),为积雪草质量评价提供科学依据。方法采用HPLC法建立16批积雪草药材指纹图谱,基于共有峰峰面积结果,借助聚类分析、主成分分析(PCA)法对其进行研究;以1,1-二苯基-2-苦基肼自由基(DPPH)、2,2′-联氨-双(3-乙基苯并噻唑-6-磺酸)二胺盐(ABTS)的测定值评价积雪草抗氧化活性,采用灰色关联度(GCA)和偏最小二乘回归(PLSR)法明确16批积雪草药材共有峰与其抗氧化能力的相关性,筛选有效成分;引入网络药理学技术分析积雪草活性成分抗氧化的核心靶点,构建“药物-成分-靶点”网络关系,基于分子对接验证活性成分与核心靶标之间的结合性能,综合筛选积雪草药效成分。结果16批积雪草药材指纹图谱相似度为0.819~0.982,共标定了9个共有峰,与对照品比对指认了其中7个化学成分;16批积雪草分为4类,均具有抗氧化能力,并呈浓度依赖性;谱效关联分析结果显示,共有峰1(积雪草苷B)、2(羟基积雪草苷)、5(山柰酚)与积雪草抗氧化活性密切相关,其中积雪草苷B、羟基积雪草苷、山柰酚作用于127个靶点,关键靶点为SRC、ESR1、HSP90AB1,经分子对接验证,3个成分与核心靶点之间均有较好的结合性能,表明积雪草抗氧化的物质基础可能为积雪草苷B、羟基积雪草苷、山柰酚。综合Q-Marker五原则,最终确定积雪草苷B、羟基积雪草苷、山柰酚、积雪草苷为积雪草质量控制指标。结论通过不同批次积雪草药材与抗氧化活性的谱效相关性分析,可为积雪草药效成分的挖掘和整体质量控制提供参考依据。 展开更多
关键词 积雪草 指纹图谱 抗氧化 谱效关系 化学模式识别 网络药理 分子对接 质量标志物
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空间飞行条件下小鼠不同组织中多组学分子互作模式挖掘及关键基因识别
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作者 张彦 杨青 +2 位作者 杜晓辉 赵磊 孙野青 《空间科学学报》 北大核心 2025年第2期529-555,共27页
为了从系统生物学的角度探究空间生物学效应,本文基于单样本网络(Single-Sample Network,SSN)开发了一种生物信息学分析方法.首先,为来自空间飞行小鼠不同组织的每个样本分别构建了转录组、DNA甲基化、蛋白质组层面的SSN.然后,提取每个... 为了从系统生物学的角度探究空间生物学效应,本文基于单样本网络(Single-Sample Network,SSN)开发了一种生物信息学分析方法.首先,为来自空间飞行小鼠不同组织的每个样本分别构建了转录组、DNA甲基化、蛋白质组层面的SSN.然后,提取每个SSN中所有节点的拓扑特征,并使用T检验识别出不同组学层面的差异互作分子.结果表明,虽然不同组学层面互作模式改变的分子交集有限,但其调控的生物过程和通路具有相似性,主要包括代谢过程、DNA损伤响应、细胞周期、氧化应激、昼夜节律等.本文还分别构建了不同组学层面的共互作网络,并识别了枢纽(Hub)基因.此外,空间飞行改变的分子互作模式可能与一系列疾病发生和病毒重激活有关. 展开更多
关键词 空间环境 单样本网络 分子互作模式 多组学
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基于UHPLC-Q-TOF-MS/MS和特征分子网络技术快速分析合欢皮化学成分
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作者 吴娟 王雅静 +3 位作者 陈文明 周梓洋 龚友兰 龙红萍 《中国现代应用药学》 北大核心 2025年第15期2555-2568,共14页
目的采用超高效液相色谱-四极杆-飞行时间串联质谱(UHPLC-Q-TOF-MS/MS)技术,建立特征分子网络(feature-based molecular networking,FBMN)对合欢皮化学成分进行系统地分析鉴定。方法采用Agilent ZORBAX Eclipse Plus C_(18)(3.0 mm×... 目的采用超高效液相色谱-四极杆-飞行时间串联质谱(UHPLC-Q-TOF-MS/MS)技术,建立特征分子网络(feature-based molecular networking,FBMN)对合欢皮化学成分进行系统地分析鉴定。方法采用Agilent ZORBAX Eclipse Plus C_(18)(3.0 mm×100 mm,1.8μm)色谱柱,以乙腈-0.1%甲酸水为流动相,梯度洗脱,电喷雾离子源(ESI)在正、负离子模式下,采集合欢皮及对照品MS/MS数据,再结合各成分MS/MS离子碎片的相似度创建全球天然产物社会分子网络(Global Natural Products Social Molecular Networking,GNPS),利用可视化FBMN,根据化合物的精确相对分子质量、特征碎片离子、对照品及数据库等匹配结果快速鉴定合欢皮醇提物的化学成分。结果从合欢皮中共鉴定出60个化学成分,包括23个脂肪酸类、12个木脂素类、7个生物碱类、3个糖苷类和15个其他类,首次从合欢皮中鉴定出46个化学成分,其中9S-羟基-10E,12Z,15Z-十八碳三烯酸、pinellic acid以及一对同分异构体由FBMN结果推测鉴定解析,并进一步探讨了主要成分脂肪酸、木脂素类化合物的裂解规律以及网络节点的关联性。结论UHPLC-Q-TOF-MS/MS结合FBMN能快速、系统、全面地鉴定合欢皮化学成分及其同分异构体,为其药效物质基础及质量控制研究奠定基础。 展开更多
关键词 合欢皮 UHPLC-Q-TOF-MS/MS 特征分子网络 裂解规律 脂肪酸类 木脂素类
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