One paper in a preceding issue of this journal has introduced the Bayesian Ying-Yang(BYY)harmony learning from a perspective of problem solving,parameter learning,and model selection.In a complementary role,the paper ...One paper in a preceding issue of this journal has introduced the Bayesian Ying-Yang(BYY)harmony learning from a perspective of problem solving,parameter learning,and model selection.In a complementary role,the paper provides further insights from another perspective that a co-dimensional matrix pair(shortly co-dim matrix pair)forms a building unit and a hierarchy of such building units sets up the BYY system.The BYY harmony learning is re-examined via exploring the nature of a co-dim matrix pair,which leads to improved learning performance with refined model selection criteria and a modified mechanism that coordinates automatic model selection and sparse learning.Besides updating typical algorithms of factor analysis(FA),binary FA(BFA),binary matrix factorization(BMF),and nonnegative matrix factorization(NMF)to share such a mechanism,we are also led to(a)a new parametrization that embeds a de-noise nature to Gaussian mixture and local FA(LFA);(b)an alternative formulation of graph Laplacian based linear manifold learning;(c)a codecomposition of data and covariance for learning regularization and data integration;and(d)a co-dim matrix pair based generalization of temporal FA and state space model.Moreover,with help of a co-dim matrix pair in Hadamard product,we are led to a semi-supervised formation for regression analysis and a semi-blind learning formation for temporal FA and state space model.Furthermore,we address that these advances provide with new tools for network biology studies,including learning transcriptional regulatory,Protein-Protein Interaction network alignment,and network integration.展开更多
The adjacent matrix method for identifying isomorphism to planar kinematic chain with multiple joints and higher pairs is presented. The topological invariants of the planar kinematic chain can be calculated and compa...The adjacent matrix method for identifying isomorphism to planar kinematic chain with multiple joints and higher pairs is presented. The topological invariants of the planar kinematic chain can be calculated and compared by adjacent matrix. The quantity of calculation can be reduced effectively using the several divisions of bars and the reconfiguration of the adjacent matrix. As two structural characteristics of adjacent matrix, the number of division and division code are presented. It can be identified that two kinematic chains are isomorphic or not by comparing the structural characteristics of their adjacent matrixes using a method called matching row-to-row. This method may be applied to the planar linkage chain too. So, the methods of identifying isomorphism are unified in the planar kinematic chain that has or hasn＇t higher pairs with or without multiple joints. And it has some characters such as visual, simple and convenient for processing by computer, and so on.展开更多
The issue of designing a type of generalized Luenberger observers for matrix second-order linear (MSOL) systems was addressed in the matrix second-order framework. By introducing the concept of stable matrix pair for ...The issue of designing a type of generalized Luenberger observers for matrix second-order linear (MSOL) systems was addressed in the matrix second-order framework. By introducing the concept of stable matrix pair for MSOL systems, sufficient and necessary conditions for the design of the type of generalized Luenberger observers were given under the assumption of controllability and observability of the MSOL system. Based on the proposed conditions and the right coprime factorization of the system, a parametric approach to the design of such type of observers was presented. The proposed approach provides all the degrees of design freedom, which can be further utilized to achieve additional system specifications. A spring-mass system was utilized to show the effect of the proposed method.展开更多
The evolution of protein family is a process along the time course, thus any mathematical methods that can describe a process over time could be possible to describe an evolutionary process. In our previously concept-...The evolution of protein family is a process along the time course, thus any mathematical methods that can describe a process over time could be possible to describe an evolutionary process. In our previously concept-initiated study, we attempted to use the differential equation to describe the evolution of hemagglutinins from influenza A viruses, and to discuss various issues related to the building of differential equation. In this study, we attempted not only to use the differential equation to describe the evolution of matrix protein 2 family from influenza A virus, but also to use the analytical solution to fit its evolutionary process. The results showed that the fitting was possible and workable. The fitted model parameters provided a way to further determine the evolutionary dynamics and kinetics, a way to more precisely predict the time of occurrence of mutation, and a way to figure out the interaction between protein family and its environment.展开更多
We present an eight component integrable Hamiltonian hierarchy, based on a reduced seventh order matrix spectral problem, with the aim of aiding the study and classification of multicomponent integrable models and the...We present an eight component integrable Hamiltonian hierarchy, based on a reduced seventh order matrix spectral problem, with the aim of aiding the study and classification of multicomponent integrable models and their underlying mathematical structures. The zero-curvature formulation is the tool to construct a recursion operator from the spatial matrix problem. The second and third set of integrable equations present integrable nonlinear Schrödinger and modified Korteweg-de Vries type equations, respectively. The trace identity is used to construct Hamiltonian structures, and the first three Hamiltonian functionals so generated are computed.展开更多
We present an analysis of a recent approach for determining the average pairing matrix elements within a specified interval of single-particle(sp)states around the Fermi level,denoted asλ.This method,known as the uni...We present an analysis of a recent approach for determining the average pairing matrix elements within a specified interval of single-particle(sp)states around the Fermi level,denoted asλ.This method,known as the uniform gap method(UGM),highlights the critical importance of the averaged sp level density.The pairing matrix elements within the UGM approach are deduced from microscopically calculated values of and gaps obtained from analytical formulae of a semi-classical nature.Two effects generally ignored in similar fits are addressed:(a)a correction for a systematic bias introduced by fitting pairing gaps corresponding to equilibrium deformation solutions,as discussed by Möller and Nix[Nucl.Phys.A 476,1(1992)],and(b)a correction for a systematic spurious enhancement of for protons in the vicinity ofλ,caused by the local Slater approximation commonly employed in treating Coulomb exchange terms(e.g.,[Phys.Rev.C 84,014310(2011)]).This approach has demonstrated significant efficiency when applied to Hartree-Fock+Bardeen-Cooper-Schrieffer(BCS)calculations(including the seniority force and self-consistent blocking for odd nuclei)of a large sample of well and rigidly deformed even-even rare-earth nuclei.The experimental moments of inertia for these nuclei were reproduced with an accuracy comparable to that achieved through direct fitting of the data[Phys.Rev.C 99,064306(2019)].In this study,we extended the evaluation of our method to the reproduction of three-point odd-even mass differences centered on odd-N or odd-Z nuclei in the same region.The agreement with experimental data was found to be comparable to that obtained through direct fitting,as reported in[Phys.Rev.C 99,064306(2019)].展开更多
基金supported by the General Research Fund from Research Grant Council of Hong Kong(Project No.CUHK4180/10E)the National Basic Research Program of China(973 Program)(No.2009CB825404).
文摘One paper in a preceding issue of this journal has introduced the Bayesian Ying-Yang(BYY)harmony learning from a perspective of problem solving,parameter learning,and model selection.In a complementary role,the paper provides further insights from another perspective that a co-dimensional matrix pair(shortly co-dim matrix pair)forms a building unit and a hierarchy of such building units sets up the BYY system.The BYY harmony learning is re-examined via exploring the nature of a co-dim matrix pair,which leads to improved learning performance with refined model selection criteria and a modified mechanism that coordinates automatic model selection and sparse learning.Besides updating typical algorithms of factor analysis(FA),binary FA(BFA),binary matrix factorization(BMF),and nonnegative matrix factorization(NMF)to share such a mechanism,we are also led to(a)a new parametrization that embeds a de-noise nature to Gaussian mixture and local FA(LFA);(b)an alternative formulation of graph Laplacian based linear manifold learning;(c)a codecomposition of data and covariance for learning regularization and data integration;and(d)a co-dim matrix pair based generalization of temporal FA and state space model.Moreover,with help of a co-dim matrix pair in Hadamard product,we are led to a semi-supervised formation for regression analysis and a semi-blind learning formation for temporal FA and state space model.Furthermore,we address that these advances provide with new tools for network biology studies,including learning transcriptional regulatory,Protein-Protein Interaction network alignment,and network integration.
文摘The adjacent matrix method for identifying isomorphism to planar kinematic chain with multiple joints and higher pairs is presented. The topological invariants of the planar kinematic chain can be calculated and compared by adjacent matrix. The quantity of calculation can be reduced effectively using the several divisions of bars and the reconfiguration of the adjacent matrix. As two structural characteristics of adjacent matrix, the number of division and division code are presented. It can be identified that two kinematic chains are isomorphic or not by comparing the structural characteristics of their adjacent matrixes using a method called matching row-to-row. This method may be applied to the planar linkage chain too. So, the methods of identifying isomorphism are unified in the planar kinematic chain that has or hasn＇t higher pairs with or without multiple joints. And it has some characters such as visual, simple and convenient for processing by computer, and so on.
文摘The issue of designing a type of generalized Luenberger observers for matrix second-order linear (MSOL) systems was addressed in the matrix second-order framework. By introducing the concept of stable matrix pair for MSOL systems, sufficient and necessary conditions for the design of the type of generalized Luenberger observers were given under the assumption of controllability and observability of the MSOL system. Based on the proposed conditions and the right coprime factorization of the system, a parametric approach to the design of such type of observers was presented. The proposed approach provides all the degrees of design freedom, which can be further utilized to achieve additional system specifications. A spring-mass system was utilized to show the effect of the proposed method.
文摘The evolution of protein family is a process along the time course, thus any mathematical methods that can describe a process over time could be possible to describe an evolutionary process. In our previously concept-initiated study, we attempted to use the differential equation to describe the evolution of hemagglutinins from influenza A viruses, and to discuss various issues related to the building of differential equation. In this study, we attempted not only to use the differential equation to describe the evolution of matrix protein 2 family from influenza A virus, but also to use the analytical solution to fit its evolutionary process. The results showed that the fitting was possible and workable. The fitted model parameters provided a way to further determine the evolutionary dynamics and kinetics, a way to more precisely predict the time of occurrence of mutation, and a way to figure out the interaction between protein family and its environment.
文摘We present an eight component integrable Hamiltonian hierarchy, based on a reduced seventh order matrix spectral problem, with the aim of aiding the study and classification of multicomponent integrable models and their underlying mathematical structures. The zero-curvature formulation is the tool to construct a recursion operator from the spatial matrix problem. The second and third set of integrable equations present integrable nonlinear Schrödinger and modified Korteweg-de Vries type equations, respectively. The trace identity is used to construct Hamiltonian structures, and the first three Hamiltonian functionals so generated are computed.
基金support by the Hue University under the Core Research Program,(NCM.DHH.2018.09)Universiti Teknologi Malaysia for its UTMShine grant(Q.J130000.2454.09G96)。
文摘We present an analysis of a recent approach for determining the average pairing matrix elements within a specified interval of single-particle(sp)states around the Fermi level,denoted asλ.This method,known as the uniform gap method(UGM),highlights the critical importance of the averaged sp level density.The pairing matrix elements within the UGM approach are deduced from microscopically calculated values of and gaps obtained from analytical formulae of a semi-classical nature.Two effects generally ignored in similar fits are addressed:(a)a correction for a systematic bias introduced by fitting pairing gaps corresponding to equilibrium deformation solutions,as discussed by Möller and Nix[Nucl.Phys.A 476,1(1992)],and(b)a correction for a systematic spurious enhancement of for protons in the vicinity ofλ,caused by the local Slater approximation commonly employed in treating Coulomb exchange terms(e.g.,[Phys.Rev.C 84,014310(2011)]).This approach has demonstrated significant efficiency when applied to Hartree-Fock+Bardeen-Cooper-Schrieffer(BCS)calculations(including the seniority force and self-consistent blocking for odd nuclei)of a large sample of well and rigidly deformed even-even rare-earth nuclei.The experimental moments of inertia for these nuclei were reproduced with an accuracy comparable to that achieved through direct fitting of the data[Phys.Rev.C 99,064306(2019)].In this study,we extended the evaluation of our method to the reproduction of three-point odd-even mass differences centered on odd-N or odd-Z nuclei in the same region.The agreement with experimental data was found to be comparable to that obtained through direct fitting,as reported in[Phys.Rev.C 99,064306(2019)].
