This paper describes the application of principal component analysis (PCA) and artificial neural network (ANN) to predict the air pollutant index (API) within the seven selected Malaysian air monitoring stations in th...This paper describes the application of principal component analysis (PCA) and artificial neural network (ANN) to predict the air pollutant index (API) within the seven selected Malaysian air monitoring stations in the southern region of Peninsular Malaysia based on seven years database (2005-2011). Feed-forward ANN was used as a prediction method. The feed-forward ANN analysis demonstrated that the rotated principal component scores (RPCs) were the best input parameters to predict API. From the 4 RPCs, only 10 (CO, O3, PM10, NO2, CH4, NmHC, THC, wind direction, humidity and ambient temp) out of 12 prediction variables were the most significant parameters to predict API. The results proved that the ANN method can be applied successfully as tools for decision making and problem solving for better atmospheric management.展开更多
The identification of hepatitis C virus(HCV)virus-human protein interactions will not only help us understand the molecular mechanisms of related diseases but also be conductive to discovering new drug targets.An incr...The identification of hepatitis C virus(HCV)virus-human protein interactions will not only help us understand the molecular mechanisms of related diseases but also be conductive to discovering new drug targets.An increasing number of clinically and experimentally validated interactions between HCV and human proteins have been documented in public databases,facilitating studies based on computational methods.In this study,we proposed a new computational approach,rotation forest position-specific scoring matrix(RF-PSSM),to predict the interactions among HCV and human proteins.In particular,PSSM was used to characterize each protein,two-dimensional principal component analysis(2DPCA)was then adopted for feature extraction of PSSM.Finally,rotation forest(RF)was used to implement classification.The results of various ablation experiments show that on independent datasets,the accuracy and area under curve(AUC)value of RF-PSSM can reach 93.74% and 94.29%,respectively,outperforming almost all cutting-edge research.In addition,we used RF-PSSM to predict 9 human proteins that may interact with HCV protein E1,which can provide theoretical guidance for future experimental studies.展开更多
文摘This paper describes the application of principal component analysis (PCA) and artificial neural network (ANN) to predict the air pollutant index (API) within the seven selected Malaysian air monitoring stations in the southern region of Peninsular Malaysia based on seven years database (2005-2011). Feed-forward ANN was used as a prediction method. The feed-forward ANN analysis demonstrated that the rotated principal component scores (RPCs) were the best input parameters to predict API. From the 4 RPCs, only 10 (CO, O3, PM10, NO2, CH4, NmHC, THC, wind direction, humidity and ambient temp) out of 12 prediction variables were the most significant parameters to predict API. The results proved that the ANN method can be applied successfully as tools for decision making and problem solving for better atmospheric management.
文摘The identification of hepatitis C virus(HCV)virus-human protein interactions will not only help us understand the molecular mechanisms of related diseases but also be conductive to discovering new drug targets.An increasing number of clinically and experimentally validated interactions between HCV and human proteins have been documented in public databases,facilitating studies based on computational methods.In this study,we proposed a new computational approach,rotation forest position-specific scoring matrix(RF-PSSM),to predict the interactions among HCV and human proteins.In particular,PSSM was used to characterize each protein,two-dimensional principal component analysis(2DPCA)was then adopted for feature extraction of PSSM.Finally,rotation forest(RF)was used to implement classification.The results of various ablation experiments show that on independent datasets,the accuracy and area under curve(AUC)value of RF-PSSM can reach 93.74% and 94.29%,respectively,outperforming almost all cutting-edge research.In addition,we used RF-PSSM to predict 9 human proteins that may interact with HCV protein E1,which can provide theoretical guidance for future experimental studies.
