Rice grain size and chalkiness are important traits that influence grain yield and quality,respectively.Mining of genes for grain yield and appearance quality and clarification of their action modes are of great impor...Rice grain size and chalkiness are important traits that influence grain yield and quality,respectively.Mining of genes for grain yield and appearance quality and clarification of their action modes are of great importance in rice breeding.In this study,a rice protein disulfide isomerase-like enzyme PDIL2-3 was characterized.Expression analysis revealed that PDIL2-3 was highly expressed in endosperm and spikelet hulls.The PDIL2-3-cri lines generated by CRISPR/Cas9 technology exhibited a chalky grain phenotype with altered storage substance accumulation and increased grain size and weight,whereas exactly opposite results were obtained for PDIL2-3 overexpression lines.Cytological experiments revealed that PDIL2-3-cri increased rice seed length mainly by increasing the cell number and rice seed width mainly by increasing the cell size in grains,implying that PDIL2-3 regulates the grain size by influencing both cell division and expansion of spikelet hulls.Further flow cytometric analysis validated that PDIL2-3 has a negative effect on cell proliferation,preventing DNA duplication and cell division in spikelet hulls.Moreover,q RT-PCR results showed that the expression levels of genes related to cell cycle and storage substance synthesis were significantly changed in PDIL2-3-cri transgenic lines.Thus,our results indicated that PDIL2-3 plays a pivotal role in influencing grain size and quality of rice by affecting cell division/expansion and storage substance accumulation,providing new insights into the function of PDIL family members in rice and enriching the genetic resources for rice breeding.展开更多
In this study,we searched for dispersed repeats(DRs)in the rice(Oryza sativa)genome using the iterative procedure(IP)method.The results revealed that the O.sativa genome contained 79 DR families,comprising 992739 DNA ...In this study,we searched for dispersed repeats(DRs)in the rice(Oryza sativa)genome using the iterative procedure(IP)method.The results revealed that the O.sativa genome contained 79 DR families,comprising 992739 DNA repeats,of which 496762 and 495977 were identified on the forward and reverse DNA strands,respectively.The detected DRs were,on average,374 bp in length and occupied 66.4%of the O.sativa genome.Totally 61%of DRs,identified by the IP method,overlapped with previously annotated dispersed repeats(ADRs)detected using the Extensive De Novo TE Annotator(EDTA)pipeline.展开更多
Oryza sativa L. ssp. japonica and indica exhibit different sensitivity to photoinhibition and they show different stability of their core proteins D1 in the chloroplast photosystem Ⅱ. Using in situ hybridization, psb...Oryza sativa L. ssp. japonica and indica exhibit different sensitivity to photoinhibition and they show different stability of their core proteins D1 in the chloroplast photosystem Ⅱ. Using in situ hybridization, psbA, the gene encoding D1 protein of O. sativa ssp. japonica cv. 9516, and that of O. sativa ssp. indica cv. Shanyou 63 was cloned. As revealed by homology comparison of their sequences, the sequences are identical in the regions of promoter and 5′-UTR; differences are found in individual bases in the coding region all of which, being in the third position of respective codons, however, do not affect the amino acids coded finally; a difference is noted in the length of the oligo-U sequence in the region of 3′-UTR. It is thus apparent that, rather than a result of any difference in the amino acid sequences, the differences in the sensitivity to photoinhibition of D1 proteins between japonica and indica rice may be related to the upstream factors that regulate expression of psbA or to differences of photoprotective mechanisms.展开更多
[ Objective ] The study aimed to reveal the genetic model of a biomass mutant in Oryza sativa. [ Method ] In the process of screening and identification of Bar-transgenic rice, a biomass mutant was found in 10 lines o...[ Objective ] The study aimed to reveal the genetic model of a biomass mutant in Oryza sativa. [ Method ] In the process of screening and identification of Bar-transgenic rice, a biomass mutant was found in 10 lines of T1 progenies. The mutant was investigated for genetic analysis and agronomic traits by herbicide spraying and PCR amplification. [ Result] The segregation ratio is consistent with mendelian law（3：1）. The mutant assumed not only higher plant height, wider straw and earlier florescence, but also more tillers, bigger spikes and resultantly higher biomass. PCR detections indicated that no co-segregation was observed between mutant traits and target gene（Bar） in the T-DNA inserted, proving that the mutant is not caused by the insertion of T-DNA containing target gene （Bar）. [ Conclusion] Our study may avail to understand the cloning of mutant gene and the mechanism of the mutant gene on biomass.展开更多
QTLs for heading date of rice （Oryza sativa L.） with additive, epistatic, and QTL × environment （QE） interaction effects were studied using a mixed-model-based composite interval mapping （MCIM） method and a...QTLs for heading date of rice （Oryza sativa L.） with additive, epistatic, and QTL × environment （QE） interaction effects were studied using a mixed-model-based composite interval mapping （MCIM） method and a double haploid （DH） population derived from IR64/Azucena in two crop seasons. Fourteen QTLs conferring heading date in rice, which were distributed on ten chromosomes except for chromosomes 5 and 9, were detected. Among these QTLs, eight had single-locus effects, five pairs had double-locus interaction effects, and two single-loci and one pair of double-loci showed QTL × environment interaction effects. All predicted values of QTL effects varied from 1.179 days to 2.549 days, with corresponding contribution ratios of 1.04%-4.84%. On the basis of the effects of the QTLs, the total genetic effects on rice heading date for the two parents and the two superior lines were predicted, and the putative reasons for discrepancies between predicted values and observed values, and the genetic potentiality in the DH population for improvement of heading date were discussed. These results are in agreement with previous results for heading date in rice, and the results provide further information, which indicate that both epistasis and QE interaction are important genetic basis for determining heading date in rice.展开更多
Reasons causing or accelerating seed aging are mainly damage of mem- branes, DNA and proteins, decline of protein synthesis capacity and excessive ac- cumulation of reactive oxygen species. With the application of nat...Reasons causing or accelerating seed aging are mainly damage of mem- branes, DNA and proteins, decline of protein synthesis capacity and excessive ac- cumulation of reactive oxygen species. With the application of natural aging or artifi- cial aging methods, it was reported that quantitative trait loci （QTLs） of seed stora- bility in rice were widely distributed on the chromosomes except the 10th chromo- some. In this paper, we reviewed the progresses in the research on physiological- biochemical and genetic mechanisms of seed aging, and analyzed the existing problems and developing prospect in molecular breeding of rice with improved seed storability, in order to provide reference for the basic research and genetic improve- ment of rice seed storabUity.展开更多
Changes in the pattern of organization of microtubules in the meiotic stages of development of pollen (i.e. from pre-meiotic interphase to more or less metaphase I) of a normal (IR36) and a temperature/photoperiod sen...Changes in the pattern of organization of microtubules in the meiotic stages of development of pollen (i.e. from pre-meiotic interphase to more or less metaphase I) of a normal (IR36) and a temperature/photoperiod sensitive male sterile line (Peiai 64S) of rice were studied using immunofluorescence confocal microscopy. In IR36, from pre-meiotic interphase to metaphase I, the pattern of microtubule distribution in the meiocytes underwent a series of changes. Some new organizational patterns of microtubules (that have not been described before) were observed during microsporogenesis, including the existence of a broad band of perinuclear microtubules at the diakinesis stage of development. The pattern of microtubule distribution in the meiocytes of the male sterile line, Peiai 64S, was quite different front that seen in IR36. In Peiai 64S, the microtubules showed abnormal patterns of distribution from pre-meiotic interphase to metaphase I. For example the broad band of perinuclear microtubules seen at diakinesis in IR36 was much disorganized and loosened in Peiai 64S. The spindles formed were also very abnormal and different from the normal spindle. The appearance of abnormal microtubule distribution in the early stages of microsporogenesis may contribute to the malformation and ultimate abortion of pollen in Peiai 64S.展开更多
[Objective] The aim was to clone ISA1 from Oryza sativa and analyze its expression situation in different tissues and different endosperm filling stage.[Method] With japonica rice cultivar nipponbare as test material,...[Objective] The aim was to clone ISA1 from Oryza sativa and analyze its expression situation in different tissues and different endosperm filling stage.[Method] With japonica rice cultivar nipponbare as test material,the expression patterns of ISA1 in different tissues and different endosperm filling stage was analyzed by using semi-quantitative RT-PCR technique.[Result]The full length open reading fragments of ISA1 encoded 811 amino acid residues.The homologous alignment and phylogenetic analysis showed th...展开更多
[Objective] This study aimed to explore the germplasm resources of salt-tolerant Spartina,sweet-stalk Soughum bicolor and high-yield Oryza sativa for innovation of new germplasms of salt-tolerant and sweet-stalk Oryza...[Objective] This study aimed to explore the germplasm resources of salt-tolerant Spartina,sweet-stalk Soughum bicolor and high-yield Oryza sativa for innovation of new germplasms of salt-tolerant and sweet-stalk Oryza sativa with dual purpose of food and forage in sea beach.[Method] From 2009 to 2012,researches on distant hybridization of Spartina,Soughum bicolor and Oryza sativa had been carried out,and the RAPD molecular identification of obtained distant hybridization materials had been conducted.[Result] Experimental evidences of hybrid seed setting,transplanting and economic characters of hybrid materials were obtained;among the 14 hybrid materials for RAPD analysis,5 materials shared common bands with Spartina and Soughum bicolor parents,which were absent in Oryza sativa parent,indicating that the genetic component of Spartina and Soughum bicolor parents has been integrated into the 5 distant hybrids.[Conclusion] This study has important scientific significance in recourse utilization,agricultural efficiency improvement,food security,and cultivation strategy of China,showing broad application prospects.展开更多
基金supported in part by grants from the National Natural Science Foundation of China(32472141,32101746,and 32102231)Natural Science Foundation of Hubei Province(JCZRLH202500540,2021CFB033,and 2022CFB393)。
文摘Rice grain size and chalkiness are important traits that influence grain yield and quality,respectively.Mining of genes for grain yield and appearance quality and clarification of their action modes are of great importance in rice breeding.In this study,a rice protein disulfide isomerase-like enzyme PDIL2-3 was characterized.Expression analysis revealed that PDIL2-3 was highly expressed in endosperm and spikelet hulls.The PDIL2-3-cri lines generated by CRISPR/Cas9 technology exhibited a chalky grain phenotype with altered storage substance accumulation and increased grain size and weight,whereas exactly opposite results were obtained for PDIL2-3 overexpression lines.Cytological experiments revealed that PDIL2-3-cri increased rice seed length mainly by increasing the cell number and rice seed width mainly by increasing the cell size in grains,implying that PDIL2-3 regulates the grain size by influencing both cell division and expansion of spikelet hulls.Further flow cytometric analysis validated that PDIL2-3 has a negative effect on cell proliferation,preventing DNA duplication and cell division in spikelet hulls.Moreover,q RT-PCR results showed that the expression levels of genes related to cell cycle and storage substance synthesis were significantly changed in PDIL2-3-cri transgenic lines.Thus,our results indicated that PDIL2-3 plays a pivotal role in influencing grain size and quality of rice by affecting cell division/expansion and storage substance accumulation,providing new insights into the function of PDIL family members in rice and enriching the genetic resources for rice breeding.
基金supported by the Russian Science Foundation,Russia(Grant No.24-24-00031).
文摘In this study,we searched for dispersed repeats(DRs)in the rice(Oryza sativa)genome using the iterative procedure(IP)method.The results revealed that the O.sativa genome contained 79 DR families,comprising 992739 DNA repeats,of which 496762 and 495977 were identified on the forward and reverse DNA strands,respectively.The detected DRs were,on average,374 bp in length and occupied 66.4%of the O.sativa genome.Totally 61%of DRs,identified by the IP method,overlapped with previously annotated dispersed repeats(ADRs)detected using the Extensive De Novo TE Annotator(EDTA)pipeline.
文摘Oryza sativa L. ssp. japonica and indica exhibit different sensitivity to photoinhibition and they show different stability of their core proteins D1 in the chloroplast photosystem Ⅱ. Using in situ hybridization, psbA, the gene encoding D1 protein of O. sativa ssp. japonica cv. 9516, and that of O. sativa ssp. indica cv. Shanyou 63 was cloned. As revealed by homology comparison of their sequences, the sequences are identical in the regions of promoter and 5′-UTR; differences are found in individual bases in the coding region all of which, being in the third position of respective codons, however, do not affect the amino acids coded finally; a difference is noted in the length of the oligo-U sequence in the region of 3′-UTR. It is thus apparent that, rather than a result of any difference in the amino acid sequences, the differences in the sensitivity to photoinhibition of D1 proteins between japonica and indica rice may be related to the upstream factors that regulate expression of psbA or to differences of photoprotective mechanisms.
文摘[ Objective ] The study aimed to reveal the genetic model of a biomass mutant in Oryza sativa. [ Method ] In the process of screening and identification of Bar-transgenic rice, a biomass mutant was found in 10 lines of T1 progenies. The mutant was investigated for genetic analysis and agronomic traits by herbicide spraying and PCR amplification. [ Result] The segregation ratio is consistent with mendelian law（3：1）. The mutant assumed not only higher plant height, wider straw and earlier florescence, but also more tillers, bigger spikes and resultantly higher biomass. PCR detections indicated that no co-segregation was observed between mutant traits and target gene（Bar） in the T-DNA inserted, proving that the mutant is not caused by the insertion of T-DNA containing target gene （Bar）. [ Conclusion] Our study may avail to understand the cloning of mutant gene and the mechanism of the mutant gene on biomass.
文摘QTLs for heading date of rice （Oryza sativa L.） with additive, epistatic, and QTL × environment （QE） interaction effects were studied using a mixed-model-based composite interval mapping （MCIM） method and a double haploid （DH） population derived from IR64/Azucena in two crop seasons. Fourteen QTLs conferring heading date in rice, which were distributed on ten chromosomes except for chromosomes 5 and 9, were detected. Among these QTLs, eight had single-locus effects, five pairs had double-locus interaction effects, and two single-loci and one pair of double-loci showed QTL × environment interaction effects. All predicted values of QTL effects varied from 1.179 days to 2.549 days, with corresponding contribution ratios of 1.04%-4.84%. On the basis of the effects of the QTLs, the total genetic effects on rice heading date for the two parents and the two superior lines were predicted, and the putative reasons for discrepancies between predicted values and observed values, and the genetic potentiality in the DH population for improvement of heading date were discussed. These results are in agreement with previous results for heading date in rice, and the results provide further information, which indicate that both epistasis and QE interaction are important genetic basis for determining heading date in rice.
基金Supported by Natural Science Foundation of Hainan Province(20163129)
文摘Reasons causing or accelerating seed aging are mainly damage of mem- branes, DNA and proteins, decline of protein synthesis capacity and excessive ac- cumulation of reactive oxygen species. With the application of natural aging or artifi- cial aging methods, it was reported that quantitative trait loci （QTLs） of seed stora- bility in rice were widely distributed on the chromosomes except the 10th chromo- some. In this paper, we reviewed the progresses in the research on physiological- biochemical and genetic mechanisms of seed aging, and analyzed the existing problems and developing prospect in molecular breeding of rice with improved seed storability, in order to provide reference for the basic research and genetic improve- ment of rice seed storabUity.
文摘Changes in the pattern of organization of microtubules in the meiotic stages of development of pollen (i.e. from pre-meiotic interphase to more or less metaphase I) of a normal (IR36) and a temperature/photoperiod sensitive male sterile line (Peiai 64S) of rice were studied using immunofluorescence confocal microscopy. In IR36, from pre-meiotic interphase to metaphase I, the pattern of microtubule distribution in the meiocytes underwent a series of changes. Some new organizational patterns of microtubules (that have not been described before) were observed during microsporogenesis, including the existence of a broad band of perinuclear microtubules at the diakinesis stage of development. The pattern of microtubule distribution in the meiocytes of the male sterile line, Peiai 64S, was quite different front that seen in IR36. In Peiai 64S, the microtubules showed abnormal patterns of distribution from pre-meiotic interphase to metaphase I. For example the broad band of perinuclear microtubules seen at diakinesis in IR36 was much disorganized and loosened in Peiai 64S. The spindles formed were also very abnormal and different from the normal spindle. The appearance of abnormal microtubule distribution in the early stages of microsporogenesis may contribute to the malformation and ultimate abortion of pollen in Peiai 64S.
基金Supported by Zhejiang Provincial Natural Science Foundation(Y3090617 and Y304463)~~
文摘[Objective] The aim was to clone ISA1 from Oryza sativa and analyze its expression situation in different tissues and different endosperm filling stage.[Method] With japonica rice cultivar nipponbare as test material,the expression patterns of ISA1 in different tissues and different endosperm filling stage was analyzed by using semi-quantitative RT-PCR technique.[Result]The full length open reading fragments of ISA1 encoded 811 amino acid residues.The homologous alignment and phylogenetic analysis showed th...
基金Supported by Natural Science Foundation of Jiangsu Province"Exploration and Innovation of Salt-tolerant and Sweet-stalk Rice Germplasm Resources with Dual Purpose of Food and Forage in Sea Beach"(BK2010270)Application Research Project from Nantong Municipal Science and Technology Bureau"Study on Molecular Breeding Technology for Salt-tolerant and Sweet-stalk Superior Forage Rice in Sea Beach"(BK2011006)~~
文摘[Objective] This study aimed to explore the germplasm resources of salt-tolerant Spartina,sweet-stalk Soughum bicolor and high-yield Oryza sativa for innovation of new germplasms of salt-tolerant and sweet-stalk Oryza sativa with dual purpose of food and forage in sea beach.[Method] From 2009 to 2012,researches on distant hybridization of Spartina,Soughum bicolor and Oryza sativa had been carried out,and the RAPD molecular identification of obtained distant hybridization materials had been conducted.[Result] Experimental evidences of hybrid seed setting,transplanting and economic characters of hybrid materials were obtained;among the 14 hybrid materials for RAPD analysis,5 materials shared common bands with Spartina and Soughum bicolor parents,which were absent in Oryza sativa parent,indicating that the genetic component of Spartina and Soughum bicolor parents has been integrated into the 5 distant hybrids.[Conclusion] This study has important scientific significance in recourse utilization,agricultural efficiency improvement,food security,and cultivation strategy of China,showing broad application prospects.
