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基于扩增子的牛结节性皮肤病病毒全基因组Nanopore测序方法的建立
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作者 艾丽双 杜秋明 +7 位作者 房琳琳 张锋 郑辉 王英丽 王志亮 李林 包静月 李海峰 《中国兽医杂志》 北大核心 2026年第3期44-53,共10页
为了建立一种简便可靠的牛结节性皮肤病病毒(LSDV)全基因组测序(WGS)方法,以便及时掌握LSDV毒株流行情况。本试验根据参考文献设计并优化23对LSDV中央区域序列的扩增子引物,以及1对基因组5′和3′末端的扩增子引物,确保能够覆盖病毒全... 为了建立一种简便可靠的牛结节性皮肤病病毒(LSDV)全基因组测序(WGS)方法,以便及时掌握LSDV毒株流行情况。本试验根据参考文献设计并优化23对LSDV中央区域序列的扩增子引物,以及1对基因组5′和3′末端的扩增子引物,确保能够覆盖病毒全基因组序列。将PCR扩增产物经1%琼脂糖凝胶电泳验证后进行Nanopore测序,使用生物信息学软件对测序数据进行组装和分析,通过二代测序验证Nanopore测序方法的准确性。为了识别4份样品所获得LSDV毒株的祖先并揭示它们之间的亲缘关系,将组装后的全基因组序列与49条代表性LSDV全基因组序列进行多序列比对,构建基于WGS的系统发育树。结果显示,本试验成功使用PCR扩增结合Nanopore测序技术建立了针对LSDV的WGS方法。该方法从4份LSDV阳性样品中获得的LSDV基因组测序覆盖度均超过96.00%,与二代测序结果一致性皆能达到99.99%。该方法在测序深度较低时仍能完成基因组组装,且在基因组的重复序列和结构变异中表现出明显优势。经全基因组系统发育分析,所获得的4株毒株序列均属于Clade 2.5。结果表明,本试验成功建立了基于扩增子的LSDV全基因组Nanopore测序方法,该方法具有操作简便、结果可靠的优势,可为当前我国牛结节性皮肤病(LSD)防控和分子流行病学研究提供技术支持。 展开更多
关键词 牛结节性皮肤病病毒(LSDV) nanopore测序 全基因组测序(WGS) 遗传进化分析
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Length-dependent Nanopore Transport and Surface-induced Unfolding of Polyglutamine Chains
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作者 Mei Feng Nan Wang +3 位作者 Yan Wang Bi-Jun Xu Xiao-Gang Wang Ting-Ting Sun 《Chinese Journal of Polymer Science》 2026年第4期1165-1172,I0019,共9页
Huntington's disease(HD)is caused by the abnormal expansion of polyglutamine(poly Q)repeats encoded in exon 1 of the huntingtin(HTT)gene,with neurotoxicity typically emerging when the repeat length exceeds 36 glut... Huntington's disease(HD)is caused by the abnormal expansion of polyglutamine(poly Q)repeats encoded in exon 1 of the huntingtin(HTT)gene,with neurotoxicity typically emerging when the repeat length exceeds 36 glutamine residues.Increasing the poly Q length promotes hypercompact conformations;however,how such compact chains mechanically unfold under nanoconfinement remains insufficiently understood.In this study,all-atom molecular dynamics simulations were performed to investigate the nanopore transport and surface-induced unfolding of poly Q chains of different lengths(Q22,Q36,Q40,and Q46)through graphene nanopores under controlled pulling velocities.By quantitatively analyzing the transport dynamics,as characterized by the pulling force,radius of gyration,center-of-mass distance,interaction energies,number of transported residues,and pulling energy,we demonstrated that poly Q chains of all investigated lengths can successfully translocate through the nanopore and undergo progressive unfolding on the graphene surface over a wide range of pulling velocities.Longer poly Q chains exhibit a higher resistance to unfolding,characterized by enhanced force peaks and increased pulling energy,reflecting stronger intramolecular interactions.Moreover,slower pulling velocities reduce the force fluctuations and lower the overall pulling energy.These results provide molecular-level mechanistic insights into the length-dependent transport and surface-mediated unfolding of poly Q,offering a physical basis for understanding poly Q conformational regulation relevant to Huntington's disease. 展开更多
关键词 Polyglutamine(poly Q) nanopore transport Molecular dynamics simulation Surface-mediated unfolding Huntington's disease
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Fluid migration in calcite nanopores under salinity gradients:Insights from molecular dynamics
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作者 Yi Chen Yan Zhang +1 位作者 Run-Sheng Han Lei Wang 《Acta Geochimica》 2026年第1期185-203,共19页
The migration mechanisms of ore-forming fluids have long been a focus in the field of ore deposit studies.Calcite is ubiquitously present in various types of rocks in the lithosphere,and the underlying mechanisms of i... The migration mechanisms of ore-forming fluids have long been a focus in the field of ore deposit studies.Calcite is ubiquitously present in various types of rocks in the lithosphere,and the underlying mechanisms of its influence on fluid migration are of crucial importance.While previous studies have revealed that salinity changes can modulate fluid migration,the underlying mechanisms remain poorly understood.We employ molecular dynamics simulations to elucidate how salinity variations in ore-forming fluids modulate the adsorption onto calcite nanopore walls,thereby revealing the microscopic mechanisms governing ore fluid transport through calcite nano-fractures.The results show that the adsorption energy Eint of the solution on the calcite surface increased from -14,948.84±182.48 kcal/mol to -12,144.08±118.2 kcal/mol as salinity increased,which is conducive to the long-range transport of the fluid in the calcite nanopore. 展开更多
关键词 Fluid transport dynamics Salinity gradient regulation Calcite nanopores Molecular dynamics simulation
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基于Nanopore测序技术的非洲猪瘟Ⅰ/Ⅱ重组型和Ⅱ型全基因组测序方法的建立
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作者 张梦凡 刘武函 +9 位作者 范仲鑫 尚玲 唐小明 王卫国 谢怡灵 张坤 彭志 鲁杏华 王贵平 胡巧云 《中国兽医学报》 北大核心 2025年第12期2586-2597,共12页
非洲猪瘟(African swine fever,ASF)是由非洲猪瘟病毒(African swine fever virus,ASFV)引起的一种急性、烈性、接触性传染病,能够感染家猪和野猪,并对全球经济及养猪业的健康发展构成严重威胁。近几年,我国流行ASFV毒株基因组也发生着... 非洲猪瘟(African swine fever,ASF)是由非洲猪瘟病毒(African swine fever virus,ASFV)引起的一种急性、烈性、接触性传染病,能够感染家猪和野猪,并对全球经济及养猪业的健康发展构成严重威胁。近几年,我国流行ASFV毒株基因组也发生着一系列的缺失/重组等变异,为了解临床ASFV流行情况,本研究通过Nanopore三代测序技术建立一种ASFV二型和重组型全基因组测序方法。以基因Ⅰ型(Pig/SD/DY-1/2021)、基因Ⅱ型(HLJPig/HLJ/18)及重组型毒株Pig/jiangsu/LG/2021为参考毒株,设计32对引物并分为8个引物池对样本进行多重PCR(multiplex polymerase chain reaction,mPCR),利用Nanopore测序技术对扩增产物进行测序,对得到的测序结果进行生物信息数据分析,建立了ASFV二型毒株和重组型毒株全基因组测序方法。应用该方法成功从淋巴结样本中获取2个毒株全基因组,ASFV重组型毒株China-HN-6和Ⅱ型毒株China-HN-5拼接后的基因组大小分别为185094和189107 bp,且China-HN-6和China-HN-5平均测序深度分别为574×和828×,China-HN-6与PIG/Jiangsu/LG/2021参考基因组相比,基因组变异为0.0140%,其中缺失占0.0065%、插入占0.0016%、单核苷酸变异占0.0059%;China-HN-5与Pig/HLJ/18参考基因组相比,基因组变异为0.0130%,其中缺失占0.0037%、插入占0.0032%、单核苷酸变异占0.0064%。经一代测序验证表明,在B646L、CD2V和CVR等关键基因及部分随机选取变异位点上,此方法结果与一代测序结果100%一致。此外,该研究中还发现了ASFV重组型毒株在B602L基因区间存在56 bp重复序列的插入(通过一代测序技术进行了验证)。研究成功建立了基于纳米孔测序平台的ASFV重组型毒株和Ⅱ型毒株全基因组测序方法,该方法具有良好的简便性和可靠性,为当前ASF的防控和分子流行病学研究提供了一个重要手段。 展开更多
关键词 nanopore测序 非洲猪瘟病毒 生物信息学分析
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Nanopore测序辅助诊断牦牛死亡病例揭示BVDV等多病原混合感染
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作者 马筱芮 林元清 +12 位作者 阚威 易乐 黎杨 李秀英 李雪梅 郑思思 魏梦君 柴晖丽 王金黎 多杰扎西 涂长春 朱国强 何彪 《病毒学报》 北大核心 2025年第5期1511-1521,共11页
牦牛(Bos grunniens)是我国西部高原地区重要的经济动物之一。2024年初,青海某地牦牛出现了以腹泻为主要特征并伴随呼吸道症状的疫情,病死率高达67.50%,常规病原检测发现了牛多杀性巴氏杆菌感染。为进一步排查病因,我们结合Nanopore和Il... 牦牛(Bos grunniens)是我国西部高原地区重要的经济动物之一。2024年初,青海某地牦牛出现了以腹泻为主要特征并伴随呼吸道症状的疫情,病死率高达67.50%,常规病原检测发现了牛多杀性巴氏杆菌感染。为进一步排查病因,我们结合Nanopore和Illumina病毒组技术、分子检测、遗传演化对临床病料进行分析。运用基于Nanopore测序的病毒组技术,在接收到样品后最快9 h便发现了牛病毒性腹泻病毒(Bovine viral diarrhea virus,BVDV)的信息;在随后的24 h测序中,结合Illumina测序结果,我们发现BVDV是主要病毒,并存在BVDV-1、BVDV-3、A型轮状病毒和传染性鼻气管炎病毒的混合感染,因此推断,此次疫情可能是以BVDV和牛巴氏杆菌为代表的多病原混合感染导致的。本研究示例了Nanopore测序技术在未知疫情的辅助诊断中具有显著的快捷优势,但同时也存在准确度不足的问题;相关数据进一步说明病毒细菌混合感染是规模化养殖疫病防控的重要问题,严格落实生物安全管理制度是解决该问题的关键措施之一。 展开更多
关键词 nanopore ILLUMINA 快速检测 未知病原 混合感染
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Nanopore靶向测序在呼吸道样本中检测非结核分枝杆菌的诊断价值研究
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作者 应广智 蔡青山 +2 位作者 马晓卿 陈凌燕 陈园园 《中国防痨杂志》 北大核心 2025年第5期589-596,共8页
目的:探讨Nanopore靶向测序在呼吸道样本中检测非结核分枝杆菌(non-tuberculous mycobacteria,NTM)的诊断价值。方法:回顾性收集2021年12月至2022年9月在浙江省杭州市红十字会医院结核病诊疗中心行呼吸道样本Nanopore靶向测序的455例患... 目的:探讨Nanopore靶向测序在呼吸道样本中检测非结核分枝杆菌(non-tuberculous mycobacteria,NTM)的诊断价值。方法:回顾性收集2021年12月至2022年9月在浙江省杭州市红十字会医院结核病诊疗中心行呼吸道样本Nanopore靶向测序的455例患者的资料。根据诊断标准,455例患者最终诊断为NTM-PD患者(NTM-PD组)65例,诊断为非NTM-PD患者(非NTM-PD组)390例,455例患者的肺泡灌洗液或痰液同时进行Nanopore靶向测序、BACTEC MGIT 960液体培养(简称“液体培养”)和(或)PCR荧光探针检测,比较各种方法诊断NTM-PD的效能。结果:以临床诊断结果为标准,Nanopore靶向测序、液体培养、PCR荧光探针检测呼吸道样本NTM的敏感度分别为92.3%(60/65)、83.1%(54/65)和57.1%(36/63),特异度分别为96.2%(375/390)、98.7%(385/390)和99.5%(380/382),阳性预测值分别为80.0%(60/75)、91.5%(54/59)和94.7%(36/38),阴性预测值分别为98.7%(375/380)、97.2%(385/396)和93.4%(380/407);Nanopore靶向测序、液体培养和PCR荧光探针的Kappa值分别为0.831、0.851和0.679。以液体培养为标准,Nanopore靶向测序和PCR荧光探针检测的敏感度分别为86.4%(51/59)和73.5%(36/49),特异度分别为98.0%(388/396)和94.4%(374/396),阳性预测值分别为86.4%(51/59)和62.1%(36/58),阴性预测值分别为98.0%(388/396)和96.6%(374/387);Nanopore靶向测序和PCR荧光探针的Kappa值分别为0.844和0.629。在65例临床诊断为NTM-PD组的患者中,Nanopore靶向测序和液体培养+基因芯片均为阳性的样本为50例,菌种鉴定的一致性为96.0%(48/50)。结论:Nanopore靶向测序在诊断NTM-PD中表现出较高的敏感度和特异度,与常规鉴定方法的一致性良好。在菌种鉴定方面,Nanopore靶向测序与液体培养结合基因芯片的检测结果具有高度一致性。Nanopore靶向测序能够对疑似NTM-PD患者的临床呼吸道样本进行快速检测,并获取菌种鉴定结果,为后续抗NTM治疗方案的制定提供指导。 展开更多
关键词 非典型性细菌 分枝杆菌感染 nanoporeS 诊断技术和方法 敏感性与特异性
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Transformative Catalytic Carbon Conversion Enabling Superior Graphitization and Nanopore Engineering in Hard Carbon Anodes for Sodium-Ion Batteries 被引量:2
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作者 Guilai Zhang Hong Gao +14 位作者 Dingyi Zhang Jun Xiao Limeng Sun Jiayi Li Congcong Li Yiwen Sun Xinyao Yuan Peng Huang Yi Xu Xin Guo Yufei Zhao Yong Wang Yao Xiao Guoxiu Wang Hao Liu 《Carbon Energy》 2025年第6期37-46,共10页
Hard carbons are promising anode materials for sodium-ion batteries(SIBs),but they face challenges in balancing rate capability,specific capacity,and initial Coulombic efficiency(ICE).Direct pyrolysis of the precursor... Hard carbons are promising anode materials for sodium-ion batteries(SIBs),but they face challenges in balancing rate capability,specific capacity,and initial Coulombic efficiency(ICE).Direct pyrolysis of the precursor often fails to create a suitable structure for sodium-ion storage.Molecular-level control of graphitization with open channels for Na^(+)ions is crucial for high-performance hard carbon,whereas closed pores play a key role in improving the low-voltage(<0.1 V)plateau capacity of hard carbon anodes for SIBs.However,creation of these closed pores presents significant challenges.This work proposes a zinc gluconate-assisted catalytic carbonization strategy to regulate graphitization and create numerous nanopores simultaneously.As the temperature increases,trace amounts of zinc remain as single atoms in the hard carbon,featuring a uniform coordination structure.This mitigates the risk of electrochemically irreversible sites and enhances sodium-ion transport rates.The resulting hard carbon shows an excellent reversible capacity of 348.5 mAh g^(-1) at 30 mA g^(-1) and a high ICE of 92.84%.Furthermore,a sodium storage mechanism involving“adsorption-intercalation-pore filling”is elucidated,providing insights into the pore structure and dynamic pore-filling process. 展开更多
关键词 catalytic carbonization GRAPHITIZATION hard carbon nanoporeS sodium-ion batteries
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Improved equation of state model for the phase behavior of CO_(2)-hydrocarbon coupling nanopore confinements 被引量:1
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作者 Yuan Zhang Zijing Niu +1 位作者 Fangfang Yang Zhanwei Ma 《Natural Gas Industry B》 2025年第3期316-327,共12页
In shale reservoirs,fluids are often confined within nanopores,leading to apparent effects on the properties and phase behavior of the fluid.However,previous studies have primarily focused on the effect of capillary p... In shale reservoirs,fluids are often confined within nanopores,leading to apparent effects on the properties and phase behavior of the fluid.However,previous studies have primarily focused on the effect of capillary pressure or adsorption on well performance,and only a very limited number of studies have researched the complex and coupled impact of confinement on capillarity,adsorption,and interactions between fluid molecules and pore walls.Therefore,in this study,an effective method is developed for evaluating the coupled effects of nanopore confinement on CO_(2) injection performance.First,a comprehensive thermodynamic model that incorporates adsorption,capillary pressure,and molecule-wall interaction in nanopores by modifying the Peng-Robinson equation of state(PR-EOS)is proposed.Subsequently,the calculated critical properties of different components are validated against experimental measured data,illustrating that the developed model can accurately predict the properties of the components of CO_(2)-hydrocarbon systems.Numerical simulations of field-scale case studies were then performed and calibrated using a modified phase equilibrium model.Typical fluid properties were inputted to investigate the effect of nanopore confinement on the CO_(2) injection performance.The results of this study show that the ultimate recovery factor increases by approximately 4.61%at a pore size of 10 nm,indicating that nanopore confinement is advantageous to well performance.Light hydrocarbons undergo more intense mass transfer than heavy hydrocarbons.Furthermore,as the pore radius decreased from 100 nm to 10 nm,the CO_(2) storage coefficient increased by 2.8%.The findings of this study deepen the collective understanding of the effect of nanopore confinement on CO_(2) displacement and storage,which has significant field-scale applications. 展开更多
关键词 nanopore confinement Minimum miscibility pressure Shale formations CO_(2)injection
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Highly active bayberry-like porous silver microparticles for fabricating sintered silver with dispersed nanopores and adjustable Young's modulus 被引量:1
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作者 Bo-Long Dong Hao-Song Li +7 位作者 Chuan-Qi Dong Xiang-Ji Li Yi-Chen Zhu Yi Fang Bi-Cheng Fu Seung-Boo Jung Wen-Bo Zhu Ming-Yu Li 《Rare Metals》 2025年第7期5078-5095,共18页
Silver paste is widely used in power electronics as a die-attach material owing to its low-temperature sinterability,high melting point,and excellent electrical and thermal conductivities in sintered joints.However,ow... Silver paste is widely used in power electronics as a die-attach material owing to its low-temperature sinterability,high melting point,and excellent electrical and thermal conductivities in sintered joints.However,owing to the mismatch in the coefficient of thermal expansion(CTE)between the joints and chip,the high Young's modulus of sintered silver hinders the mitigation of the high thermal stress generated during the operation of power modules,which increases the susceptibility of sintered joints to cracking,thereby leading to potential failure.This study developed a facile approach to synthesizing bayberry-like Ag microparticles(AgMPs)through the in situ assembly of silver nanorods,resulting in a uniform distribution of nanoscale structures and mesopores on the particle surface.These particles exhibited a high specific surface area of 2.5389 m^(2)·g^(-1),which enhanced theirsintering activity,enabling sintering to occur at 149.7℃.Furthermore,the porous structure of the AgMPs effectively reduced the density of joints formed by sintering AgMP paste,thereby lowering the Young's modulus of the joints.The small grain size and intricate internal substructure of the joints yielded high shear strength,which reached112.50 MPa at 250℃.The Young's modulus could be adjusted,and the pores provided by the AgMPs maintained the Young's modulus within a low range(15.11-29.61GPa),effectively mitigating thermal stress.These new bayberry-like porous AgMPs offer a promising option for die-attach materials in electronic packaging. 展开更多
关键词 Bayberry-like silver particles nanoporeS Ag sinter joining Young’s modulus Shear strength
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Structure and Photoelectric Properties of β-Ga_(2)O_(3) Nanopores Grown by Pulsed Laser Deposition on AAO Templates
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作者 GE Xuehao JIANG Kai WANG Xianghu 《发光学报》 北大核心 2025年第12期2302-2308,共7页
The wide band gap characteristics of gallium oxide make it very suitable for the preparation of solar-blind ultra-violet photodetectors.The responsivity of ultraviolet photodetectors based on thin films is often low.H... The wide band gap characteristics of gallium oxide make it very suitable for the preparation of solar-blind ultra-violet photodetectors.The responsivity of ultraviolet photodetectors based on thin films is often low.However,nanomaterials have excellent photoelectric properties in device applications due to the high stability brought by high specific surface area and high crystal quality.Here,we successfully depositedβ-Ga_(2)O_(3) nanopores on the double-pass ordered porous AAO tem-plate by PLD.The porous AAO template is used as the growth space of nanomaterials,and the gallium oxide material is filled into the pores of the template to form a nanotube structure.By optimizing the preparation process,the relationship be-tween the performance of gallium oxide nanopores and the growth time was studied in depth.With the increase of growth time,the responsivity of the detector was improved.The rise timeτr=0.7 s,the decay timeτ_(d)=1.3 s,and the responsivity reached 4.63 mA·W^(-1),which was higher than 2.24 mA·W^(-1)of the responsivity of silicon-based gallium oxide nanorods. 展开更多
关键词 β-Ga_(2)O_(3)nanopores AAO template PLD wide bandgap semiconductor materials
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Nanopore targeted sequencing identifies pathogens in patients with postoperative endophthalmitis
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作者 Xin-Lei Hao Man Yuan +5 位作者 Ming Wang Ai-Si Fu Jia-Shuang Gu Bing-Qian Yang Wei Jin An-Huai Yang 《International Journal of Ophthalmology(English edition)》 2025年第8期1544-1552,共9页
AIM:To estimate if nanopore targeted sequencing(NTS)could identify pathogens causing postoperative endophthalmitis and further determine the feasibility of clinical application of NTS.METHODS:A total of 55 patients(55... AIM:To estimate if nanopore targeted sequencing(NTS)could identify pathogens causing postoperative endophthalmitis and further determine the feasibility of clinical application of NTS.METHODS:A total of 55 patients(55 eyes)with postoperative endophthalmitis were retrospectively included in this study with their medical records.Intraocular fluid samples were examined by NTS and microbial culture.All included patients had undergone examinations including measurement of best corrected visual acuity(BCVA)and intraocular pressure(IOP),slit-lamp biomicroscopy,and indirect ophthalmoscopy;additionally,they underwent B-ultrasound,anterior segment photography,and fundus photography if necessary.RESULTS:Among 55 patients with postoperative endophthalmitis,the age was 65.25±15.04y and there were 30 female(54.54%)patients.Forty-one(74.54%)vitreous humor samples and fourteen(25.45%)aqueous humor samples were sent for both NTS and microbial culture.NTS had a notable higher detection rate than microbial culture in detecting pathogens(90.91%vs 38.18%,χ^(2)=33.409,P<0.001).NTS exhibited high sensitivity of pathogen detection in both microbial culture positive and negative samples(100%and 85.29%,respectively).In 16 of 21(76.19%)patients who showed culture-positivity,their results corresponded with those of NTS.Moreover,in two patients(9.52%),NTS showed a better species resolution than microbial culture;in three patients(14.28%),NTS identified additional pathogens.As for fungus,the positive detection rate of NTS was significantly higher than that of microbial culture(20%vs 3.64%,χ^(2)=7.066,P=0.008).Also,NTS could detect multi-infection by bacteria and fungi than microbial culture(32.73%vs 0,χ^(2)=21.522,P<0.001).NTS could detect bacteria as well as fungi simultaneously within 48h in all patients.Meanwhile,NTS had a shorter detection time than microbial culture(1.13±0.34 vs 2.67±0.55d,Z=-9.218,P<0.001).After the NTS results were obtained,15 patients received additional intravitreal/intracameral anti-infection treatment.At follow-up,there was a statistically significant improvement in the visual acuity relative to the baseline(Z=−5.222,P<0.001).CONCLUSION:NTS can provide rapid identification and highly sensitive detection of pathogens among patients with postoperative endophthalmitis,which can guide anti-infection treatment and improve visual prognosis. 展开更多
关键词 postoperative endophthalmitis nanopore targeted sequencing third-generation sequencing microbial culture
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Spatial nanopores-assisted biomimetic nanozymes for sensitive detection of organophosphorus pesticide in real samples
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作者 Mei Du Xianghao Zha +3 位作者 Jingzhang Liu Mengfan Niu Maoyong Song Guibin Jiang 《Journal of Environmental Sciences》 2025年第12期748-760,共13页
Biomimetic nanozymes opens up new opportunities for sensitive,rapid and field detection of organophosphorus pesticides(OPs).However,it still remains challenges in how to improve the sensitivity and stability of biomim... Biomimetic nanozymes opens up new opportunities for sensitive,rapid and field detection of organophosphorus pesticides(OPs).However,it still remains challenges in how to improve the sensitivity and stability of biomimetic nanozymes under harsh conditions.Herein,we synthesized a novel biomimetic nanozyme composed of hemin and bovine serum albumin(BSA)in the nanopores of poly-l-lysine methacryloyl(PLMA)inverse opal hydrogel(PLMA-Hemin-BSA).PLMA-Hemin-BSA achieves superior peroxidase-like activity and shows high stability due to the confinement effect.A multi-enzyme cascade reaction was constructed for the colorimetric detection of five widely used OPs by integrating PLMAHemin-BSA with natural choline oxidase and acetylcholinesterase.The detection limits for dichlorvos,chlorpyrifos,paraoxon,methamidophos,and parathion were as low as 0.024,0.073,0.12,0.56,and 1.4 ng/mL,respectively.More importantly,the average recovery rates and the relative standard deviations(RSD)of chlorpyrifos in paddy water,soil and wheat samples were 86.62%-100.13%and 2.08%-8.65%,which meet the standard of the International Union of Pure and Applied Chemistry(IUPAC,recoveries of 70%-120%with RSD<20%).This study represented advanced methods toward enhancing the activity and stability of biomimetic nanozymes via spatial nanopores-assisted strategy. 展开更多
关键词 Biomimetic nanozymes nanopore Organophosphorus pesticides Colorimetric detection
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Phase Behavior and Dew Point Pressure of Multicomponent Condensate Gas in Nanopores
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作者 Jichao Zhao Xu Yan +1 位作者 Jing Sun Sheng Li 《Fluid Dynamics & Materials Processing》 2025年第2期279-292,共14页
Shale gas reservoirs typically contain numerous nanoscale pores,with pore size playing a significant role in influencing the gas behavior.To better understand the related mechanisms,this study employs the Gauge-GEMC m... Shale gas reservoirs typically contain numerous nanoscale pores,with pore size playing a significant role in influencing the gas behavior.To better understand the related mechanisms,this study employs the Gauge-GEMC molecular simulation method to systematically analyze the effects of various pore sizes(5,10,20,and 40 nm)on the phase behavior and dew point pressure of the shale gas reservoir components.The simulation results reveal that when pore sizes are smaller than 40 nm,the dew point pressure increases significantly as the pore size decreases.For instance,the dew point pressure in 5 nmpores is 20.3%higher than undermacroscopic conditions.Additionally,larger hydrocarbon molecules exhibit a tendency to aggregate in smaller pores,particularly in the 5–10 nm range,where the relative concentration of heavy hydrocarbons(C_(4+))increases markedly.Moreover,as the pore size becomes larger,the component distribution gradually aligns with experimental results observed under macroscopic conditions.This study demonstrates that pore effects are more pronounced for smaller sizes,directly influencing the aggregation of heavy hydrocarbons and the rise in dew point pressure.These phenomena could significantly impact the diffusivity of shale gas reservoirs and the recovery of condensate gas.The findings provide new theoretical insights into phase behavior changes in nanopores,offering valuable guidance for optimizing shale gas reservoir extraction strategies. 展开更多
关键词 Condensate gas nanoporeS molecular simulation dew point pressure confinement effect
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Phase behavior of CO_(2)-shale oil in nanopores
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作者 WANG Yuhan LEI Zhengdong +6 位作者 LIU Yishan PAN Xiuxiu CHEN Zhewei ZHANG Yuanqing ZHENG Xiaoyu LIU Pengcheng HAN Yi 《Petroleum Exploration and Development》 2025年第1期182-195,共14页
Considering the interactions between fluid molecules and pore walls,variations in critical properties,capillary forces,and the influence of the adsorbed phase,this study investigates the phase behavior of the CO_(2)-s... Considering the interactions between fluid molecules and pore walls,variations in critical properties,capillary forces,and the influence of the adsorbed phase,this study investigates the phase behavior of the CO_(2)-shale oil within nanopores by utilizing a modified Peng-Robinson(PR)equation of state alongside a three-phase(gas-liquid-adsorbed)equilibrium calculation method.The results reveal that nano-confinement effects of the pores lead to a decrease in both critical temperature and critical pressure of fluids as pore size diminishes.Specifically,CO_(2) acts to inhibit the reduction of the critical temperature of the system while promoting the decrease in critical pressure.Furthermore,an increase in the mole fraction of CO_(2) causes the critical point of the system to shift leftward and reduces the area of the phase envelope.In the shale reservoirs of Block A in Gulong of the Daqing Oilfield,China,pronounced confinement effects are observed.At a pore diameter of 10 nm,reservoir fluids progressively exhibit characteristics typical of condensate gas reservoirs.Notably,the CO_(2) content in liquid in 10 nm pores increases by 20.0%compared to that in 100 nm pores,while the CO_(2) content in gas decreases by 10.8%.These findings indicate that confinement effects enhance CO_(2) mass transfer within nanopores,thereby facilitating CO_(2) sequestration and improving microscopic oil recovery. 展开更多
关键词 shale oil nanoporeS nano-confinement effect phase behavior PR equation of state
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Molecular understanding of phase behavior of hydrocarbon mixtures in nanopores and their influence on recovery dynamics
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作者 Jingshan Wang Yan Wang +5 位作者 Binhui Li Qingzhen Wang Siwei Meng Ruoshi Chen Hengan Wu Fengchao Wang 《Theoretical & Applied Mechanics Letters》 2025年第4期388-397,共10页
Understanding the phase behavior of hydrocarbons and their mixtures,especially under confinement,is crucial for the extraction of shale oil and gas.In this study,we employed molecular dynamics simulations to investiga... Understanding the phase behavior of hydrocarbons and their mixtures,especially under confinement,is crucial for the extraction of shale oil and gas.In this study,we employed molecular dynamics simulations to investigate the phase behaviors of three typical hydrocarbons(methane,pentane,and octane)in the bulk phase and in nanopores.We find that the confinement effect can alter the phase behavior of a single-component hydrocarbon.For the mixture of methane and octane in nanopores,a rather high proportion of methane could inhibit the capillary condensation of octane.We also studied the influence of phase behavior on the recovery dynamics of hydrocarbon mixtures from blind nanopores of different sizes at different gas-oil ratios.The capillary condensation of the heavy hydrocarbon components in the nanopore throat could hinder the transport of light.These findings increase the understanding of the occurrence states of shale oil and gas and their migration through nanopore throats,providing practical guidance for shale oil and gas development. 展开更多
关键词 Phase behavior Shale oil/gas Confinement effect nanoporeS Capillary condensation
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Fe^(3+) ion quantification with reusable bioinspired nanopores
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作者 Yanqiong Wang Yaqi Hou +1 位作者 Fengwei Huo Xu Hou 《Chinese Chemical Letters》 2025年第2期179-184,共6页
Excessive Fe^(3+) ion concentrations in wastewater pose a long-standing threat to human health.Achieving low-cost,high-efficiency quantification of Fe^(3+) ion concentration in unknown solutions can guide environmenta... Excessive Fe^(3+) ion concentrations in wastewater pose a long-standing threat to human health.Achieving low-cost,high-efficiency quantification of Fe^(3+) ion concentration in unknown solutions can guide environmental management decisions and optimize water treatment processes.In this study,by leveraging the rapid,real-time detection capabilities of nanopores and the specific chemical binding affinity of tannic acid to Fe^(3+),a linear relationship between the ion current and Fe^(3+) ion concentration was established.Utilizing this linear relationship,quantification of Fe^(3+) ion concentration in unknown solutions was achieved.Furthermore,ethylenediaminetetraacetic acid disodium salt was employed to displace Fe^(3+) from the nanopores,allowing them to be restored to their initial conditions and reused for Fe^(3+) ion quantification.The reusable bioinspired nanopores remain functional over 330 days of storage.This recycling capability and the long-term stability of the nanopores contribute to a significant reduction in costs.This study provides a strategy for the quantification of unknown Fe^(3+) concentration using nanopores,with potential applications in environmental assessment,health monitoring,and so forth. 展开更多
关键词 Bioinspired nanopores Fe^(3+)ion quantification Chemical binding affinity Tannic acid REUSABILITY
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Application of Nanopore Sequencing Technology in the Clinical Diagnosis of Infectious Diseases 被引量:12
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作者 ZHANG Lu Lu ZHANG Chi PENG Jun Ping 《Biomedical and Environmental Sciences》 SCIE CAS CSCD 2022年第5期381-392,共12页
Infectious diseases are an enormous public health burden and a growing threat to human health worldwide.Emerging or classic recurrent pathogens,or pathogens with resistant traits,challenge our ability to diagnose and ... Infectious diseases are an enormous public health burden and a growing threat to human health worldwide.Emerging or classic recurrent pathogens,or pathogens with resistant traits,challenge our ability to diagnose and control infectious diseases.Nanopore sequencing technology has the potential to enhance our ability to diagnose,interrogate,and track infectious diseases due to the unrestricted read length and system portability.This review focuses on the application of nanopore sequencing technology in the clinical diagnosis of infectious diseases and includes the following:(i)a brief introduction to nanopore sequencing technology and Oxford Nanopore Technologies(ONT)sequencing platforms;(ii)strategies for nanopore-based sequencing technologies;and(iii)applications of nanopore sequencing technology in monitoring emerging pathogenic microorganisms,molecular detection of clinically relevant drug-resistance genes,and characterization of disease-related microbial communities.Finally,we discuss the current challenges,potential opportunities,and future outlook for applying nanopore sequencing technology in the diagnosis of infectious diseases. 展开更多
关键词 nanopore sequencing Infectious diseases PATHOGEN Oxford nanopore Technologies
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Nanopore测序揭示m6A修饰铁死亡相关基因在中晚期头颈部鳞状细胞癌中的表达及临床意义 被引量:1
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作者 庄黎明 丁雅婷 +2 位作者 蔡成福 叶辉 蔡耿明 《中国耳鼻咽喉颅底外科杂志》 CAS CSCD 2023年第5期60-70,共11页
目的研究N6-甲基腺苷(m6A)修饰在中晚期头颈部鳞状细胞癌(HNSCC)的作用和基因相关通路,为头颈部HNSCC患者的个体化精准治疗提出新的观点及研究参考。方法选取3对临床中晚期HNSCC患者的癌及其癌旁组织(6个样本)进行测序,从癌和癌旁组织... 目的研究N6-甲基腺苷(m6A)修饰在中晚期头颈部鳞状细胞癌(HNSCC)的作用和基因相关通路,为头颈部HNSCC患者的个体化精准治疗提出新的观点及研究参考。方法选取3对临床中晚期HNSCC患者的癌及其癌旁组织(6个样本)进行测序,从癌和癌旁组织的转录组、m6A相关差异基因中筛选出两者共同的差异基因,通过基因本体(GO)分析、pathway分析及蛋白相互作用(PPI)分析,找出其中的枢纽(hub)基因,随后对网络中的基因进行基因集变异分析(GSVA),从而得到m6A修饰影响的基因及通路。结果从癌与癌旁组织的差异基因中筛选出96个转录组m6A相关的上调基因、159个m6A相关下调基因;信号通路分析发现PPAR通路、免疫相关通路下调,代谢通路上调;构建PPI后发现,CDK1呈现上调趋势,而DCN及ARG2均呈现下调趋势;GSVA分析发现PI3K/AKT信号通路在癌组织中上调;PPI中的hub基因共表达分析发现AGR2和CDK1在m6A调控下,与铁死亡相关基因联系很密切。结论m6A修饰与FOXA1、RPL8、DNC、CDK1、ApoE、POSTN、YWHAZ、MMP13等铁死亡相关基因紧密相关,m6A修饰可能通过铁死亡相关基因影响免疫、代谢相关通路,从而在中晚期HNSCC中起重要作用。 展开更多
关键词 nanopore测序 N6-甲基腺苷 AGR2 头颈部鳞状细胞癌
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Electrophoresis of poly(dT)_(20) through α-hemolysin nanopore in high concentration potassium chloride solution
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作者 司伟 杨浩杰 +4 位作者 纪安平 李堃 沙菁 刘磊 陈云飞 《Journal of Southeast University(English Edition)》 EI CAS 2016年第4期496-501,共6页
Experiments of poly(dT)20 electrophoresis throughα-hemolysin nanopores were performed to unveil the electrophoretic transport mechanism of DNA through nanopores in high concentration potassium chloride solution. It... Experiments of poly(dT)20 electrophoresis throughα-hemolysin nanopores were performed to unveil the electrophoretic transport mechanism of DNA through nanopores in high concentration potassium chloride solution. It is found that there are two obvious current blockades induced by poly(dT)20 translocation and collision events. Both blockade currents increase linearly with the applied bias voltage. However, the normalized blockade currents are almost kept the same although variable bias voltages are applied. The collision time of poly(dT)20 in the luminal site of the pore remains constant for different voltages. The translocation speed of poly(dT)20through the nanopore decreases with the increase of bias voltage. It is because as the potential increases, the drag force on the homopolymer helps it to crumple into a cluster much easier due to the poor stacking of thymine residues compared with homopolymers consisting of other nucleotides. Molecular dynamics simulations further confirm the experimental results. Increasing the applied bias voltage can slowdown the translocation velocity of the flexible poly(dT)20, which favors increasing the precision of single molecule detection by using nanopores. 展开更多
关键词 nanopore transport speed ionic current ELECTROPHORESIS
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Solid-state nanopores for ion and small molecule analysis
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作者 Qi Zhang Yue Cheng +1 位作者 Peisheng Cao Zhiyuan Gu 《Chinese Chemical Letters》 SCIE CAS CSCD 2019年第9期1607-1617,共11页
Solid-state nanopore in analytical chemistry has developed rapidly in the 1990s and it is proved to be a versatile new tool for bioanalytical chemistry. The research field of solid-state nanopore starts from mimicking... Solid-state nanopore in analytical chemistry has developed rapidly in the 1990s and it is proved to be a versatile new tool for bioanalytical chemistry. The research field of solid-state nanopore starts from mimicking the biological nanopore in living cells. Understanding the transport mechanism of biological nanopore in vivo is a big challenge because of the experimental difficulty, so it is essential to establish the basic research of artificial nanopores in vitro especially for the analysis of ions and small molecules. The performance of solid-state nanopores could be evaluated by monitoring currents when ions and molecules passed through. The comparison of the two types of nanopores based on current-derived information can reveal the principle of biological nanopores, while the solid-state nanopores are applied into practical bioanalysis. In this review, we focus on the researches of the solid-state nanopores in the fabrication process and in the analysis of ions and small molecules. Fabrication methods of nanopores,ion transport mechanism, small molecule analysis and theoretical studies are discussed in detail. 展开更多
关键词 Solid-state nanoporeS Single nanopore ION Small molecule Nonlinear CURRENT-VOLTAGE curves IONIC current RECTIFICATION
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