Gossypium raimondii(2n=2x=26,D_(5)),an untapped wild species,is the putative progenitor of the D-subgenome of G.hirsutum(2n=4x=52,AD_(1)),an extensively cultivated species.Here,we developed a G.hirsutum(recipient)–G....Gossypium raimondii(2n=2x=26,D_(5)),an untapped wild species,is the putative progenitor of the D-subgenome of G.hirsutum(2n=4x=52,AD_(1)),an extensively cultivated species.Here,we developed a G.hirsutum(recipient)–G.raimondii(donor)introgression population to exploit the favorable QTLs/genes and mapped potential quantitative trait loci(QTLs)from wild cotton species.The introgression population consisted of 256 lines with an introgression rate of 52.33%for the G.raimondii genome.The introgression segment length range was 0.03–19.12 Mb,with an average of 1.22 Mb.The coverage of total introgression fragments from G.raimondii was 386.98 Mb.Further genome-wide association analysis(Q+K+MLM)and QTL mapping(RSTEP-LRT)identified 59 common QTLs,including 14 stable QTLs and six common QTL(co-QTL)clusters,and one hotspot of micronaire(MIC).The common QTLs for seed index all showed positive additive effects,while the common QTLs for boll weight all had negative additive effects,indicating that the linkage between seed index and boll weight could be broken.QTLs for lint percentage showed positive effects and could be beneficial for improving cotton yield.Most QTLs for fiber quality had negative additive effects,implying these QTLs were domesticated/improved in G.hirsutum.A few fiber quality QTLs showed positive additive effects,so they could be used to improve cotton fiber quality.The introgression lines developed could be useful for molecular marker-assisted breeding and mapping QTLs precisely for mining desirable genes from the wild species G.raimondii.Such genes can improve cultivated cotton in the future through a designbreeding approach.展开更多
Background Unravelling the relationship between trichome density and resistance to jassids in upland cotton,nine parental lines,viz.MCU 5,CO 14,CO 17,TCH 1828,KC 2,KC 3,GISV 323,GTHV 15–34,and RHC 1409 were obtained ...Background Unravelling the relationship between trichome density and resistance to jassids in upland cotton,nine parental lines,viz.MCU 5,CO 14,CO 17,TCH 1828,KC 2,KC 3,GISV 323,GTHV 15–34,and RHC 1409 were obtained from the Tamilnadu Agricultural University.These genotypes were subjected to molecular analysis using 27 primers,merely the JESPR 154 primer amplifying a 150-bp fragment in genotypes exhibiting the pubescence.Result This finding validated the association between pubescence and jassid resistance.Further analysis revealed that resistant genotypes(KC 3,GTHV 15–34,GISV 323,and RHC 1409)exhibited significantly higher trichome densities and length compared with susceptible genotypes.These results stalwartly support the hypothesis that trichomes play a pivotal role in conferring resistance to jassids in upland cotton.Conclusion By breeding cotton varieties with increased trichome density and length,it is possible to reduce jassid infestations,thereby decreasing the reliance on chemical pesticides and promoting a more sustainable agricultural environment.展开更多
Correction:J Cotton Res 8,27(2025)https://doi.org/10.1186/s42397-025-00228-y During the publication process of the original article(Soltani Toularoud et al.2025),the article title has been wrongly captured.Te article ...Correction:J Cotton Res 8,27(2025)https://doi.org/10.1186/s42397-025-00228-y During the publication process of the original article(Soltani Toularoud et al.2025),the article title has been wrongly captured.Te article title should be corrected from:of butisanstar and clopyralid herbicides on Gos-sypium hirsutum L.growth:insights from a pot experiment to:Residual efects of butisanstar and clopyralid herbi-cides on Gossypium hirsutum L.growth:insights from a pot experiment Te original article(Soltani Toularoud et al.2025)has been updated.Te publisher apologizes to the authors and readers for the inconvenience caused.展开更多
Introducing the inherent genetic diversity of wild species into cultivars has become one of the hot topics in crop genetic breeding and genetic resource research.Fiber-and seed-related traits,which are critical to the...Introducing the inherent genetic diversity of wild species into cultivars has become one of the hot topics in crop genetic breeding and genetic resource research.Fiber-and seed-related traits,which are critical to the global economy and people's livelihoods,are the principal focus of cotton breeding.Here,the wild cotton species Gossypium tomentosum was used to broaden the genetic basis of G.hirsutum and identify QTLs for fiber-and seed-related traits.A population of 559 chromosome segment substitution lines(CSSLs)was established with various chromosome segments from G.tomentosum in a G.hirsutum cultivar background.Totals of 72,89,and 76 QTLs were identified for three yield traits,five fiber quality traits,and six cottonseed nutrient quality traits,respectively.Favorable alleles of 104 QTLs were contributed by G.tomentosum.Sixty-four QTLs were identified in two or more environments,and candidate genes for three of them were further identified.The results of this study contribute to further studies on the genetic basis of the morphogenesis of these economic traits,and indicate the great breeding potential of G.tomentosum for improving the fiber-and seed-related traits in G.hirsutum.展开更多
Background Mepiquat chloride(MC)is a widely used plant growth regulator in cotton(Gossypium hirsutum L.).It regulates endogenous hormone content and crosstalk to control plant height and promote lateral root(LR)develo...Background Mepiquat chloride(MC)is a widely used plant growth regulator in cotton(Gossypium hirsutum L.).It regulates endogenous hormone content and crosstalk to control plant height and promote lateral root(LR)development.However,the roles of cytokinins(CTKs)in the MC-induced increase in LR number in cotton seedlings remain unclear.Therefore,in this study,whole-genome transcriptome analysis was performed to elucidate the molecular mechanisms,CTK transformation,and CTK signaling pathway response to MC in cotton roots.Results In the present study,MC reduced the contents of the active CTK trans-zeatin(tZ)and N^(6)-isopentenyladenine(iP)but increased the levels of the nucleoside CTK trans-zeatin riboside(tZR)and N^(6)-isopentenyladenine riboside(iPR).RNA-seq data showed that the CTK biosynthesis genes GhIPTs and active CTK catabolism genes GhCKXs were obviously upregulated after MC treatment.The CTK-activating enzyme gene GhLOGs was repressed compared with the control.Furthermore,MC inhibited the expression of GhAHK4 and GhARR2/12,which are involved in the CTK signaling pathway,and activated the IAA-IAA14-ARF7/19 signaling module.Meanwhile,MC increased the expression levels of genes involved in sucrose synthesis,the cell cycle,cell division,and cell wall biosynthesis pathways.Silencing the GhCKX family separately decreased the LR number and active indole-3-acetic acid(IAA)level.The expression levels of GhPIN1,GhARF7,GhARF19,GhLBD16,GhLBD18,GhLBD29,and GhLBD33 were downregulated,but GhARR2/12 and GhIAA14 were upregulated.The total content of active CTKs was noticeably increased.The results of silencing the GhLOGs family were opposite to those of silencing GhCKXs.Silencing GhARR12 could upregulate GhPIN1 expression and increase LR number.In addition,the silenced GhCKXs,GhLOGs,and GhARR12 were less responsive to MCinduced LR growth than the control.Conclusion These results suggested that MC treatment could upregulate CTK-nucleoside biosynthesis and CTK metabolism genes to decrease active CTK levels,promoting crosstalk between CTKs and auxin signaling pathways to enhance LR initiation.展开更多
Leaf is a essential part of the plants for photosynthetic activities which mainly economize the resources for boll heath. Significant variations of leaf shapes across the Gossypium sp. considerably influence the infil...Leaf is a essential part of the plants for photosynthetic activities which mainly economize the resources for boll heath. Significant variations of leaf shapes across the Gossypium sp. considerably influence the infiltration of sunlight for photosynthesis. To understand the genetic variants and molecular processes underlying for cotton leaf shape, we used F2 population derived from upland cotton genotype P30A （shallow-lobed leaf） and sea-island cotton genotype ISR （deep-lobed leaf） to map leaf deep lobed phenotype controlling genes LBL1 and LBL2. Genetic analysis and localization results have unmasked the position and interaction between both loci of LBL1 and LBL2, and revealed the co-dominance impact of the genes in regulating depth of leaf blades lobes in cotton. LBL1 had been described as a main gene and member of transcription factor family leucine zipper （HD-ZIPI） from a class I homologous domain factor Gorai.OO2G244000. The qRT-PCR results elaborated the continuous change in expression level of LBL1 at different growth stages and leaf parts of cotton. Higher expression level was observed in mature large leaves followed by medium and young leaves respectively. For further confirmation, plants were tested from hormonal induction treatments, which explained that LBL 1 expression was influenced by hormonal signaling. Moreover, the highest expression level was detected in brassinolides （BR） treatment as compared to other hormones, and this hormone plays an important role in the process of leaf blade lobed formation.展开更多
[Objective] This study was conducted to clarify the biological information of PHYB genes in upland cotton （Gossypium hirsutum）. [Method] Two PHYB genes were identified from the genome database of allotetraploid cott...[Objective] This study was conducted to clarify the biological information of PHYB genes in upland cotton （Gossypium hirsutum）. [Method] Two PHYB genes were identified from the genome database of allotetraploid cotton （G. hirsutum L. acc. TM-1）, and were found to be distributed on subgenomes A10 and D10. And then bioinformatic analysis on these two genes were performed. [Result] The PHYB genes of upland cotton had the same motifs and domains with the PHYB genes in other plant species, and even the number and location of the motifs and domains of these PHYB genes were consistent. The PHYB amino acid sequence alignment and the phylogenetic tree constructed based on PHYB amino acid sequence of these plant species indicated that the two PHYB genes in upland cotton had higher homology and closer evolutionary relationships with cocoa （Theobroma cacao）, but lower similarity to PHYB genes in monocotyledonous plants, such as rice （Oryza saitva） and corn （Zea mays）. The comparison of PHYB gene structure also revealed that plant PHYB gene was more conserved during evolution. The autophosphorylation of dozens of phosphorylation sites in upland cotton PHYB gene may be essential for the functions of phytochromes and plays a significant role in regulating phytochrome-mediated signal transduction pathways. [Conclusion] The results of this paper will provide a theoretical basis for the cloning and functional research of PHYB genes.展开更多
WRKY proteins are members of a family of transcription factors in higher plants that function in plant responses to various physiological processes.We identified 120 candidate WRKY genes from Gossypium raimondii with ...WRKY proteins are members of a family of transcription factors in higher plants that function in plant responses to various physiological processes.We identified 120 candidate WRKY genes from Gossypium raimondii with corresponding expressed sequence tags in at least one of four cotton species,Gossypium hirsutum,Gossypium barbadense,Gossypium arboreum,and G.raimondii.These WRKY members were anchored on 13 chromosomes in G.raimondii with uneven distribution.Phylogenetic analysis showed that WRKY candidate genes can be classified into three groups,with 20 members in group I,88 in group II,and 12 in group III.The88 genes in group II were further classified into five subgroups,groups IIa–e,containing 7,16,37,15,and 13 members,respectively.We characterized diversity in amino acid residues in the WRKY domain and/or other zinc finger motif regions in the WRKY proteins.The expression patterns of WRKY genes revealed their important roles in diverse functions in cotton developmental stages of vegetative and reproductive growth and stress response.Structural and expression analyses show that WRKY proteins are a class of important regulators of growth and development and play key roles in response to stresses in cotton.展开更多
Sixteen cotton cultivars widely planted in China were sowed under five different drought concentrations(0,2.5,5,7.5,and 10%)using PEG6000 to screen the indices of drought resistance identification and explore the drou...Sixteen cotton cultivars widely planted in China were sowed under five different drought concentrations(0,2.5,5,7.5,and 10%)using PEG6000 to screen the indices of drought resistance identification and explore the drought resistance of different cotton cultivars.Eighteen physiological indices including root,stem,and leaf water contents(RWC,SWC,and LWC),net photosynthetic rate(Pn),the maximum photochemical quantum yield(Fv/Fm),the actual photochemical quantum yield(ΦPSII),non-photochemical quenching coefficient(NPQ),leaf water potential(LWP),osmotic potential(Ψs),leaf relative conductivity(REC),leaf proline content(Pro),leaf and root soluble protein contents(LSPC and RSPC),leaf and root malondialdehyde(MDA)contents(LMDA and RMDA),root superoxide dismutase,peroxidase,and catalase activities(RSOD,RPOD,and RCAT)were measured.Results indicated the 18 physiological indices can be converted into five or six independent comprehensive indices by principal component analysis,and nine typical indices(Fv/Fm,SWC,LWP,Pro,LMDA,RSPC,RMDA,RSOD,and RCAT)screened out by a stepwise regression method could be utilized to evaluate the drought resistance.Moreover,the 16 cotton cultivars were divided into four types:drought sensitive,drought weak sensitive,moderate drought resistant,and drought resistant types.The resistance ability of two selected cotton cultivars(drought resistant cultivar,Dexiamian 1;drought sensitive cultivar,Yuzaomian 9110)with contrasting drought sensitivities were further verified by pot experiment.Results showed that the responses of final cotton biomass,yield,and yield composition to drought were significantly different between the two cultivars.In conclusion,drought resistant cultivar Dexiamian 1 and drought sensitive cultivar Yuzaomian 9110 were screened through hydroponics experiment,which can be used as ideal experimental materials to study the mechanism of different cotton cultivars with contrasting drought sensitivities in response to drought stress.展开更多
Plant height is an important trait in cotton. To elucidate the molecular mechanisms of the dwarf phenotype, a sterile-dwarf mutant derived from Gossypium arboreum L. cv. Jinhuazhongmian was developed by ^60Co y-ray ir...Plant height is an important trait in cotton. To elucidate the molecular mechanisms of the dwarf phenotype, a sterile-dwarf mutant derived from Gossypium arboreum L. cv. Jinhuazhongmian was developed by ^60Co y-ray irradiation. The results demonstrated that the steriledwarf mutant phenotype was controlled by a pair of recessive gene, which was designated sd^a. Plants carrying the sd^a gene contained lower levels of indole-3-acetic acid （IAA） and abscisic acid （ABA） compared with wild-type （WT） plants. The chlorophyll content and net photosynthetic rate in mutant leaves were markedly decreased. However, it was possible that ABA biosynthesis or signaling was involved in governing the sd^a phenotype. Semi-quantitative RT-PCR analysis detected 13 differentially expressed ESTs, and the steriledwarf mutant exhibited decreased expression levels relative to the WT. The role of nine potential hormone biosynthetic genes in the synthesis of IAA, ABA, polyamines （PAs） and jasmonic acid （JA） were discussed.展开更多
Asiatic cotton （Gossypium arboreum L.） is an Old World cultivated cotton species. The sinense race was planted extensively in China. Due to the advances in spinning technology during the last century, the species wa...Asiatic cotton （Gossypium arboreum L.） is an Old World cultivated cotton species. The sinense race was planted extensively in China. Due to the advances in spinning technology during the last century, the species was replaced by the New World allotetraploid cotton G. hirsutum L. Gossypium arboreum is still grown in India and Pakistan and also used as an elite in current cotton breeding programs. In addition, G. arboreum serves as a model for genomic research in Gossypium. In the present study, we generated an A-genome diploid cotton intraspecific genetic map including 264 SSR loci with three morphological markers mapped to 13 linkage groups. The map spans 2,508.71 cM with an average distance of 9.4 cM between adjacent loci. A population containing 176 F2：3 families was used to perform quantitative trait loci （QTL） mapping for 17 phenotypes using Multiple QTL Model （MQM） of MapQTL ver 5.0. Overall, 108 QTLs were detected on 13 chromosomes. Thirty-one QTLs for yield and its components were detected in the F2 population. Forty-one QTLs for yield and its components were detected in the F2：3 families with a total of 43 QTLs for fiber qualities. Two QTLs for seed cotton weight/plant and lint index and three QTLs for seed index were consistently detected both in F2 and F2：3. Most QTLs for fiber qualities and yields were located at the same interval or neighboring intervals. These results indicated that the negative correlation between fiber qualities and yield traits may result from either pleiotropic effect of one gene or linkage effects of multiple closely linked genes.展开更多
The phytochrome B (PHYB) gene of Arabidopsis thaliana was introduced into cotton through Agrobacterium tumefaciens.Integration and expression of PHYB gene in cotton plants were confirmed by molecular evidence.Messenge...The phytochrome B (PHYB) gene of Arabidopsis thaliana was introduced into cotton through Agrobacterium tumefaciens.Integration and expression of PHYB gene in cotton plants were confirmed by molecular evidence.Messenger RNA (mRNA) expression in one of the transgenic lines,QCC11,was much higher than those of control and other transgenic lines.Transgenic cotton plants showed more than a two-fold increase in photosynthetic rate and more than a four-fold increase in transpiration rate and stomatal conductance.The increase in photosynthetic rate led to a 46% increase in relative growth rate and an 18% increase in net assimilation rate.Data recorded up to two generations,both in the greenhouse and in the field,revealed that overexpression of Arabidopsis thaliana PHYB gene in transgenic cotton plants resulted in an increase in the production of cotton by improving the cotton plant growth,with 35% more yield.Moreover,the presence of the Arabidopsis thaliana PHYB gene caused pleiotropic effects like semi-dwarfism,decrease in apical dominance,and increase in boll size.展开更多
基金funded by the National Key Research and Development Program of China(2016YFD0100203 and 2016YFD0102000)the Key Scientific and Technological Projects of the Eighth Division of the Xinjiang Production and Construction Corps(XPCC),China(2024NY01,2023 NY09,2023 NY10)+2 种基金the Key Scientific and Technological Project of XPCC,China(2021AB010)the Postgraduate Research&Practice Innovation Program of Jiangsu Province,China(KYCX22_0748)supported by the High-performance Computing Platform of the Bioinformatics Center,Nanjing Agricultural University,China。
文摘Gossypium raimondii(2n=2x=26,D_(5)),an untapped wild species,is the putative progenitor of the D-subgenome of G.hirsutum(2n=4x=52,AD_(1)),an extensively cultivated species.Here,we developed a G.hirsutum(recipient)–G.raimondii(donor)introgression population to exploit the favorable QTLs/genes and mapped potential quantitative trait loci(QTLs)from wild cotton species.The introgression population consisted of 256 lines with an introgression rate of 52.33%for the G.raimondii genome.The introgression segment length range was 0.03–19.12 Mb,with an average of 1.22 Mb.The coverage of total introgression fragments from G.raimondii was 386.98 Mb.Further genome-wide association analysis(Q+K+MLM)and QTL mapping(RSTEP-LRT)identified 59 common QTLs,including 14 stable QTLs and six common QTL(co-QTL)clusters,and one hotspot of micronaire(MIC).The common QTLs for seed index all showed positive additive effects,while the common QTLs for boll weight all had negative additive effects,indicating that the linkage between seed index and boll weight could be broken.QTLs for lint percentage showed positive effects and could be beneficial for improving cotton yield.Most QTLs for fiber quality had negative additive effects,implying these QTLs were domesticated/improved in G.hirsutum.A few fiber quality QTLs showed positive additive effects,so they could be used to improve cotton fiber quality.The introgression lines developed could be useful for molecular marker-assisted breeding and mapping QTLs precisely for mining desirable genes from the wild species G.raimondii.Such genes can improve cultivated cotton in the future through a designbreeding approach.
文摘Background Unravelling the relationship between trichome density and resistance to jassids in upland cotton,nine parental lines,viz.MCU 5,CO 14,CO 17,TCH 1828,KC 2,KC 3,GISV 323,GTHV 15–34,and RHC 1409 were obtained from the Tamilnadu Agricultural University.These genotypes were subjected to molecular analysis using 27 primers,merely the JESPR 154 primer amplifying a 150-bp fragment in genotypes exhibiting the pubescence.Result This finding validated the association between pubescence and jassid resistance.Further analysis revealed that resistant genotypes(KC 3,GTHV 15–34,GISV 323,and RHC 1409)exhibited significantly higher trichome densities and length compared with susceptible genotypes.These results stalwartly support the hypothesis that trichomes play a pivotal role in conferring resistance to jassids in upland cotton.Conclusion By breeding cotton varieties with increased trichome density and length,it is possible to reduce jassid infestations,thereby decreasing the reliance on chemical pesticides and promoting a more sustainable agricultural environment.
文摘Correction:J Cotton Res 8,27(2025)https://doi.org/10.1186/s42397-025-00228-y During the publication process of the original article(Soltani Toularoud et al.2025),the article title has been wrongly captured.Te article title should be corrected from:of butisanstar and clopyralid herbicides on Gos-sypium hirsutum L.growth:insights from a pot experiment to:Residual efects of butisanstar and clopyralid herbi-cides on Gossypium hirsutum L.growth:insights from a pot experiment Te original article(Soltani Toularoud et al.2025)has been updated.Te publisher apologizes to the authors and readers for the inconvenience caused.
基金supported by the National Natural Science Foundation of China(32172064)。
文摘Introducing the inherent genetic diversity of wild species into cultivars has become one of the hot topics in crop genetic breeding and genetic resource research.Fiber-and seed-related traits,which are critical to the global economy and people's livelihoods,are the principal focus of cotton breeding.Here,the wild cotton species Gossypium tomentosum was used to broaden the genetic basis of G.hirsutum and identify QTLs for fiber-and seed-related traits.A population of 559 chromosome segment substitution lines(CSSLs)was established with various chromosome segments from G.tomentosum in a G.hirsutum cultivar background.Totals of 72,89,and 76 QTLs were identified for three yield traits,five fiber quality traits,and six cottonseed nutrient quality traits,respectively.Favorable alleles of 104 QTLs were contributed by G.tomentosum.Sixty-four QTLs were identified in two or more environments,and candidate genes for three of them were further identified.The results of this study contribute to further studies on the genetic basis of the morphogenesis of these economic traits,and indicate the great breeding potential of G.tomentosum for improving the fiber-and seed-related traits in G.hirsutum.
基金supported by the National Natural Science Foundation of China(Grant No.31471434)。
文摘Background Mepiquat chloride(MC)is a widely used plant growth regulator in cotton(Gossypium hirsutum L.).It regulates endogenous hormone content and crosstalk to control plant height and promote lateral root(LR)development.However,the roles of cytokinins(CTKs)in the MC-induced increase in LR number in cotton seedlings remain unclear.Therefore,in this study,whole-genome transcriptome analysis was performed to elucidate the molecular mechanisms,CTK transformation,and CTK signaling pathway response to MC in cotton roots.Results In the present study,MC reduced the contents of the active CTK trans-zeatin(tZ)and N^(6)-isopentenyladenine(iP)but increased the levels of the nucleoside CTK trans-zeatin riboside(tZR)and N^(6)-isopentenyladenine riboside(iPR).RNA-seq data showed that the CTK biosynthesis genes GhIPTs and active CTK catabolism genes GhCKXs were obviously upregulated after MC treatment.The CTK-activating enzyme gene GhLOGs was repressed compared with the control.Furthermore,MC inhibited the expression of GhAHK4 and GhARR2/12,which are involved in the CTK signaling pathway,and activated the IAA-IAA14-ARF7/19 signaling module.Meanwhile,MC increased the expression levels of genes involved in sucrose synthesis,the cell cycle,cell division,and cell wall biosynthesis pathways.Silencing the GhCKX family separately decreased the LR number and active indole-3-acetic acid(IAA)level.The expression levels of GhPIN1,GhARF7,GhARF19,GhLBD16,GhLBD18,GhLBD29,and GhLBD33 were downregulated,but GhARR2/12 and GhIAA14 were upregulated.The total content of active CTKs was noticeably increased.The results of silencing the GhLOGs family were opposite to those of silencing GhCKXs.Silencing GhARR12 could upregulate GhPIN1 expression and increase LR number.In addition,the silenced GhCKXs,GhLOGs,and GhARR12 were less responsive to MCinduced LR growth than the control.Conclusion These results suggested that MC treatment could upregulate CTK-nucleoside biosynthesis and CTK metabolism genes to decrease active CTK levels,promoting crosstalk between CTKs and auxin signaling pathways to enhance LR initiation.
基金supported by the Genetically Modified Organisms Breeding Major Projects,China (2016ZX0800 5004, 2016ZX08009003-003-004)the National Natural Science Foundation of China (31601349)the Innovation Program of Chinese Academy of Agricultural Sciences
文摘Leaf is a essential part of the plants for photosynthetic activities which mainly economize the resources for boll heath. Significant variations of leaf shapes across the Gossypium sp. considerably influence the infiltration of sunlight for photosynthesis. To understand the genetic variants and molecular processes underlying for cotton leaf shape, we used F2 population derived from upland cotton genotype P30A （shallow-lobed leaf） and sea-island cotton genotype ISR （deep-lobed leaf） to map leaf deep lobed phenotype controlling genes LBL1 and LBL2. Genetic analysis and localization results have unmasked the position and interaction between both loci of LBL1 and LBL2, and revealed the co-dominance impact of the genes in regulating depth of leaf blades lobes in cotton. LBL1 had been described as a main gene and member of transcription factor family leucine zipper （HD-ZIPI） from a class I homologous domain factor Gorai.OO2G244000. The qRT-PCR results elaborated the continuous change in expression level of LBL1 at different growth stages and leaf parts of cotton. Higher expression level was observed in mature large leaves followed by medium and young leaves respectively. For further confirmation, plants were tested from hormonal induction treatments, which explained that LBL 1 expression was influenced by hormonal signaling. Moreover, the highest expression level was detected in brassinolides （BR） treatment as compared to other hormones, and this hormone plays an important role in the process of leaf blade lobed formation.
基金Supported by National Natural Science Foundation of China(31301682)the Agricultural Science Independent Innovation Foundation of Jiangsu Province[CX(14)5009]+1 种基金National Key Special Project for Breeding and Cultivation of GMO Varieties of China(2013ZX08005)the Jiangsu Province Science and Technology Support Program(BE2014389)~~
文摘[Objective] This study was conducted to clarify the biological information of PHYB genes in upland cotton （Gossypium hirsutum）. [Method] Two PHYB genes were identified from the genome database of allotetraploid cotton （G. hirsutum L. acc. TM-1）, and were found to be distributed on subgenomes A10 and D10. And then bioinformatic analysis on these two genes were performed. [Result] The PHYB genes of upland cotton had the same motifs and domains with the PHYB genes in other plant species, and even the number and location of the motifs and domains of these PHYB genes were consistent. The PHYB amino acid sequence alignment and the phylogenetic tree constructed based on PHYB amino acid sequence of these plant species indicated that the two PHYB genes in upland cotton had higher homology and closer evolutionary relationships with cocoa （Theobroma cacao）, but lower similarity to PHYB genes in monocotyledonous plants, such as rice （Oryza saitva） and corn （Zea mays）. The comparison of PHYB gene structure also revealed that plant PHYB gene was more conserved during evolution. The autophosphorylation of dozens of phosphorylation sites in upland cotton PHYB gene may be essential for the functions of phytochromes and plays a significant role in regulating phytochrome-mediated signal transduction pathways. [Conclusion] The results of this paper will provide a theoretical basis for the cloning and functional research of PHYB genes.
基金financially supported in part by the National Science Foundation of China(31171590)the Specialized Research Fund for the Doctoral Program of Higher Education of China(20090097110010)+1 种基金the Natural Science Foundation of Jiangsu Province,China(BK2010065)a project funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions
文摘WRKY proteins are members of a family of transcription factors in higher plants that function in plant responses to various physiological processes.We identified 120 candidate WRKY genes from Gossypium raimondii with corresponding expressed sequence tags in at least one of four cotton species,Gossypium hirsutum,Gossypium barbadense,Gossypium arboreum,and G.raimondii.These WRKY members were anchored on 13 chromosomes in G.raimondii with uneven distribution.Phylogenetic analysis showed that WRKY candidate genes can be classified into three groups,with 20 members in group I,88 in group II,and 12 in group III.The88 genes in group II were further classified into five subgroups,groups IIa–e,containing 7,16,37,15,and 13 members,respectively.We characterized diversity in amino acid residues in the WRKY domain and/or other zinc finger motif regions in the WRKY proteins.The expression patterns of WRKY genes revealed their important roles in diverse functions in cotton developmental stages of vegetative and reproductive growth and stress response.Structural and expression analyses show that WRKY proteins are a class of important regulators of growth and development and play key roles in response to stresses in cotton.
基金supported by the National Natural Science Foundation of China (31630051 and 31571606)the Jiangsu Collaborative Innovation Center for Modern Crop Production, China (JCIC-MCP)the earmarked fund for China Agriculture Research System (CARS-18-14)
文摘Sixteen cotton cultivars widely planted in China were sowed under five different drought concentrations(0,2.5,5,7.5,and 10%)using PEG6000 to screen the indices of drought resistance identification and explore the drought resistance of different cotton cultivars.Eighteen physiological indices including root,stem,and leaf water contents(RWC,SWC,and LWC),net photosynthetic rate(Pn),the maximum photochemical quantum yield(Fv/Fm),the actual photochemical quantum yield(ΦPSII),non-photochemical quenching coefficient(NPQ),leaf water potential(LWP),osmotic potential(Ψs),leaf relative conductivity(REC),leaf proline content(Pro),leaf and root soluble protein contents(LSPC and RSPC),leaf and root malondialdehyde(MDA)contents(LMDA and RMDA),root superoxide dismutase,peroxidase,and catalase activities(RSOD,RPOD,and RCAT)were measured.Results indicated the 18 physiological indices can be converted into five or six independent comprehensive indices by principal component analysis,and nine typical indices(Fv/Fm,SWC,LWP,Pro,LMDA,RSPC,RMDA,RSOD,and RCAT)screened out by a stepwise regression method could be utilized to evaluate the drought resistance.Moreover,the 16 cotton cultivars were divided into four types:drought sensitive,drought weak sensitive,moderate drought resistant,and drought resistant types.The resistance ability of two selected cotton cultivars(drought resistant cultivar,Dexiamian 1;drought sensitive cultivar,Yuzaomian 9110)with contrasting drought sensitivities were further verified by pot experiment.Results showed that the responses of final cotton biomass,yield,and yield composition to drought were significantly different between the two cultivars.In conclusion,drought resistant cultivar Dexiamian 1 and drought sensitive cultivar Yuzaomian 9110 were screened through hydroponics experiment,which can be used as ideal experimental materials to study the mechanism of different cotton cultivars with contrasting drought sensitivities in response to drought stress.
基金supported by the National Natural Science Foundation of China (No. 30571184)the National Key Technologies Research and Development(R&D) Program of China (No. 2004BA525B05-1)
文摘Plant height is an important trait in cotton. To elucidate the molecular mechanisms of the dwarf phenotype, a sterile-dwarf mutant derived from Gossypium arboreum L. cv. Jinhuazhongmian was developed by ^60Co y-ray irradiation. The results demonstrated that the steriledwarf mutant phenotype was controlled by a pair of recessive gene, which was designated sd^a. Plants carrying the sd^a gene contained lower levels of indole-3-acetic acid （IAA） and abscisic acid （ABA） compared with wild-type （WT） plants. The chlorophyll content and net photosynthetic rate in mutant leaves were markedly decreased. However, it was possible that ABA biosynthesis or signaling was involved in governing the sd^a phenotype. Semi-quantitative RT-PCR analysis detected 13 differentially expressed ESTs, and the steriledwarf mutant exhibited decreased expression levels relative to the WT. The role of nine potential hormone biosynthetic genes in the synthesis of IAA, ABA, polyamines （PAs） and jasmonic acid （JA） were discussed.
基金supported by the Project of the Changjiang Scholars and Innovative Research Team in University, the Ministry of Education of China (No.IRT0432)the 111 Project (No.B08025)
文摘Asiatic cotton （Gossypium arboreum L.） is an Old World cultivated cotton species. The sinense race was planted extensively in China. Due to the advances in spinning technology during the last century, the species was replaced by the New World allotetraploid cotton G. hirsutum L. Gossypium arboreum is still grown in India and Pakistan and also used as an elite in current cotton breeding programs. In addition, G. arboreum serves as a model for genomic research in Gossypium. In the present study, we generated an A-genome diploid cotton intraspecific genetic map including 264 SSR loci with three morphological markers mapped to 13 linkage groups. The map spans 2,508.71 cM with an average distance of 9.4 cM between adjacent loci. A population containing 176 F2：3 families was used to perform quantitative trait loci （QTL） mapping for 17 phenotypes using Multiple QTL Model （MQM） of MapQTL ver 5.0. Overall, 108 QTLs were detected on 13 chromosomes. Thirty-one QTLs for yield and its components were detected in the F2 population. Forty-one QTLs for yield and its components were detected in the F2：3 families with a total of 43 QTLs for fiber qualities. Two QTLs for seed cotton weight/plant and lint index and three QTLs for seed index were consistently detected both in F2 and F2：3. Most QTLs for fiber qualities and yields were located at the same interval or neighboring intervals. These results indicated that the negative correlation between fiber qualities and yield traits may result from either pleiotropic effect of one gene or linkage effects of multiple closely linked genes.
文摘The phytochrome B (PHYB) gene of Arabidopsis thaliana was introduced into cotton through Agrobacterium tumefaciens.Integration and expression of PHYB gene in cotton plants were confirmed by molecular evidence.Messenger RNA (mRNA) expression in one of the transgenic lines,QCC11,was much higher than those of control and other transgenic lines.Transgenic cotton plants showed more than a two-fold increase in photosynthetic rate and more than a four-fold increase in transpiration rate and stomatal conductance.The increase in photosynthetic rate led to a 46% increase in relative growth rate and an 18% increase in net assimilation rate.Data recorded up to two generations,both in the greenhouse and in the field,revealed that overexpression of Arabidopsis thaliana PHYB gene in transgenic cotton plants resulted in an increase in the production of cotton by improving the cotton plant growth,with 35% more yield.Moreover,the presence of the Arabidopsis thaliana PHYB gene caused pleiotropic effects like semi-dwarfism,decrease in apical dominance,and increase in boll size.
