As one of the main methods of microbial community functional diversity measurement, biolog method was favored by many researchers for its simple oper- ation, high sensitivity, strong resolution and rich data. But the ...As one of the main methods of microbial community functional diversity measurement, biolog method was favored by many researchers for its simple oper- ation, high sensitivity, strong resolution and rich data. But the preprocessing meth- ods reported in the literatures were not the same. In order to screen the best pre- processing method, this paper took three typical treatments to explore the effect of different preprocessing methods on soil microbial community functional diversity. The results showed that, method B＇s overall trend of AWCD values was better than A and C＇s. Method B＇s microbial utilization of six carbon sources was higher, and the result was relatively stable. The Simpson index, Shannon richness index and Car- bon source utilization richness index of the two treatments were B〉C〉A, while the Mclntosh index and Shannon evenness were not very stable, but the difference of variance analysis was not significant, and the method B was always with a smallest variance. Method B＇s principal component analysis was better than A and C＇s. In a word, the method using 250 r/min shaking for 30 minutes and cultivating at 28 ℃ was the best one, because it was simple, convenient, and with good repeatability.展开更多
[Objectives]The paper was to establish a molecular biological method for identification of bacterial strains.[Methods]The thalli of standard bacterial strains existing in the laboratory were collected and genomic DNA ...[Objectives]The paper was to establish a molecular biological method for identification of bacterial strains.[Methods]The thalli of standard bacterial strains existing in the laboratory were collected and genomic DNA was extracted for amplification of 16S rDNA and gyrB gene.The 16S rDNA and gyrB gene sequences were obtained after sequencing.Sequences were aligned and analyzed via EzBioCloud and NCBI database,and phylogenetic trees were constructed to determine the species relationship of strains.Meantime,they were compared with known strains.[Results]This method could identify 5 standard strains accurately to the species level.The 16S rDNA and gyrB gene sequences were aligned and analyzed in EzBioCloud database and NCBI database.The strain with the max score was consistent with the known strain.And the query cover and ident were both above 99%.[Conclusions]The established molecular biological method for identification of bacterial strains by 16S rDNA and gyrB gene has good accuracy,which effectively solves the problem that the laboratory identification of bacteria relies on traditional methods and the accuracy can not be guaranteed,and further improves the identification ability of laboratory bacterial strains.展开更多
Terbinafine is a new powerful antifungal agent indicated for both oral and topical treatment of myco- sessince. It is highly effective in the treatment of determatomycoses. The chemical and pharmaceutical analysis of ...Terbinafine is a new powerful antifungal agent indicated for both oral and topical treatment of myco- sessince. It is highly effective in the treatment of determatomycoses. The chemical and pharmaceutical analysis of the drug requires effective analytical methods for quality control and pharmacodynamic and pharmacokinetic studies. Ever since it was introduced as an effective antifungal agent, many methods have been developed and validated for its assay in pharmaceuticals and biological materials. This article reviews the various methods reported during the last 25 years.展开更多
Although many biological methods are used to determine soil nitrogen supplying capacity, there are certain differences in the results for different types of soils and various ways of measurement due to the complexity ...Although many biological methods are used to determine soil nitrogen supplying capacity, there are certain differences in the results for different types of soils and various ways of measurement due to the complexity of soil N conformation, the high variance of soil and microorganism, and the difference of environment. Therefore, it is not clear about which biologic incubation method is better for calcareous soil. In this study, pot experiments were performed by using 25 different calcareous surface soil samples on the Loess Plateau and taking the N uptake of wheat and corn with leaching soil initial nitrate and without leaching in pot experiments as the control to investigate the difference of eight biological incubation methods for reflecting soil nitrogen supply capacity. The eight biological methods are waterlogged incubation, aerobic incubation for 2 weeks and for 4 weeks, dry-wet alternation aerobic incubation for 2 weeks, long-term alternate leaching aerobic incubation （and N mineralization potential, No）, short-term leaching aerobic incubation, microbial biomass carbon （Bc）, and microbial biomass nitrogen （BN） method, respectively. Among these methods, the dry-wet alternation aerobic incubation and aerobic incubation for 4 weeks were the modification of the method of aerobic incubation for 2 weeks according to the actual farmland moisture. The results showed that the correlation coefficients between these methods and crop uptake N with leaching soil initial nitrate were 0.530, 0.700, 0.777, 0.768, 0.764 （and 0.790, No）, 0.650, 0.555, and 0.465, respectively （r0.05 = 0.369, r0.0l = 0.505）. While without leaching soil initial nitrate, their coefficients were 0.351, 0.963, 0.962, 0.959, 0.825 （and0.812, No）, 0.963, 0.289, and 0.095, respectively （r0.05 = 0.369, r0.01 = 0.505）. In conclusion, excluding the soil initial nitrate, the correlation coefficients between the eight methods and crop uptake N were, from high to low, N0, aerobic incubation for 4 weeks, dry-wet alternation aerobic incubation for 2 weeks, and long-term alternate leaching aerobic incubation, while including the soil initial nitrate the correlation coefficients between them increased significantly and the values were all beyond 0.950 for these four methods, including aerobic incubation for 2 weeks and for 4 weeks, dry-wet alternation aerobic incubation for 2 weeks and short-term leaching aerobic incubation. The waterlogged incubation method, Bc and BN in the calcareous soil, had lower correlation coefficient with crop uptake nitrogen compared with other methods. Thus, dry-wet alternation aerobic incubation for 2 weeks was a better index for evaluating calcareous soil N supply capacity due to some other methods having disadvantages and not suitable for the actual farmland characteristics.展开更多
Water is essential for human life and it’s expected to be clean and safe. In Cameroon, government efforts to improve access to drinking water are mitigated. Many households are suffering from chronic water shortages ...Water is essential for human life and it’s expected to be clean and safe. In Cameroon, government efforts to improve access to drinking water are mitigated. Many households are suffering from chronic water shortages leading to the majority of people using doubtful water sources. This study was carried out in accordance with guidelines produced by the STARBIOS2-EU funded project on Responsible Research and Innovation and aimed to assess the microbiological quality of water samples collected from domestic water sources in 3 divisions of the West region of Cameroon. 22 water samples from well water, stream, water pump and river were aseptically collected. At each sampling point, 50 mL of sample was taken aseptically and immediately transported to the laboratory for analysis. The detection of Coliforms bacteria was done using Micro Biological Survey (MBS) method. 1 mL of each sample was inoculated in the Coliforms MBS (Coli MBS) vial initially rehydrated with 10 mL of sterile distilled water. The Coli MBS vials were closed, shaken for homogenization, and then incubated at 37<span style="white-space:nowrap;">°</span>C. From the initial red color of the Coli MBS vials, changes in color to yellow of the reaction vials were monitored at three different time intervals (12 h, 19 h and 24 h), corresponding to three levels of bacterial concentration. All positives samples on MBS method were selected to determine the presence of <em>E. coli</em> Loop full broths of Coli MBS vials were taken;streaked into the eosin methylene blue (EMB) agar plate and incubated at 37°C for 24 hours. <em>E. coli</em> was confirmed by observing green metallic sheen on EMB agar plate. The biochemical indole, methyl red, Voges-Proskauer and citrate (IMViC) test was performed to determine the complete microbiological profile of the water samples. Almost all the water samples were contaminated with Total Coliforms (TC). A high concentration of TC (>10<sup>3</sup> CFU/mL) was found in 8 samples (36.4%), a medium concentration (10 < x < 10<sup>3</sup> CFU/mL) was observed in 10 samples (45.5%) and 2 samples (9.1%) were low concentrated (1 < x < 10 CFU/mL). 8 samples were positive for the presence of <em>E. coli</em> by observing the green metallic sheen on EMB agar plates. The IMViC test confirmed the presences of 5 bacteria species: <em>Enterobacter spp., Klebsiella spp., E. coli spp., Salmonella spp.</em> and Shigella spp. We recommend integrating sanitary assessment in the design and implementation of water supply projects. Regular water purification using proper methods and maintenances of the water point. Regular microbiological quality assessment of water intended for human consumption should be planned and carried out.展开更多
To screen new biological formulations, accurate and efficient application technology, field test was conducted with 72% Bacillus thuringiensis(Bt)·monosultap WP, 8% lambda-cyhalothrin·emamectin benzoate SA a...To screen new biological formulations, accurate and efficient application technology, field test was conducted with 72% Bacillus thuringiensis(Bt)·monosultap WP, 8% lambda-cyhalothrin·emamectin benzoate SA and 3.6% lambda-cyhalothrin·Bt SA through manual spraying and unmanned aerial vehicle spraying. Test results and comprehensive evaluation analysis demonstrated that 72% Bt·monosultap WP and 8%lambda-cyhalothrin·emamectin benzoate SA by manual spraying and unmanned aerial vehicle spraying had good prevention and control effect on strains and internodes damaged by Tryporyza intacta Snellen in middle and late stage, which were ideal new biological formulations with high effi-ciency and low risk for prevention and control of T. intacta in middle and late stage, and could be popularized in sugarcane area. 72% Bt·monosultap WP at the dose of 3 000 g/hectare and 8% lambda-cyhalothrin·emamectin benzoate SA at the dose of 750 mL/hectare could be sprayed in mid September at the peak occurrence period of the forth and fifth generations of T. intacta and Proceras venosatus. Agents were diluted with 900 kg water per hectare, and manually sprayed with electric knapsack sprayer; or agents were diluted with 15 kg of Haoyang aerial control special addi-tives and water per hectare, and sprayed with unmanned aerial vehicle. The control effect against borer-damaged strain rate was above 81.3% and that against borer-damaged internode rate was above 88.6%.展开更多
We propose a hierarchical multi-scale attention mechanism-based model in response to the low accuracy and inefficient manual classification of existing oceanic biological image classification methods. Firstly, the hie...We propose a hierarchical multi-scale attention mechanism-based model in response to the low accuracy and inefficient manual classification of existing oceanic biological image classification methods. Firstly, the hierarchical efficient multi-scale attention(H-EMA) module is designed for lightweight feature extraction, achieving outstanding performance at a relatively low cost. Secondly, an improved EfficientNetV2 block is used to integrate information from different scales better and enhance inter-layer message passing. Furthermore, introducing the convolutional block attention module(CBAM) enhances the model's perception of critical features, optimizing its generalization ability. Lastly, Focal Loss is introduced to adjust the weights of complex samples to address the issue of imbalanced categories in the dataset, further improving the model's performance. The model achieved 96.11% accuracy on the intertidal marine organism dataset of Nanji Islands and 84.78% accuracy on the CIFAR-100 dataset, demonstrating its strong generalization ability to meet the demands of oceanic biological image classification.展开更多
为探讨不同预处理方法对养殖池塘底泥Biolog Eco板分析结果的影响,以南美白对虾养殖池塘周边底泥1#和中部底泥2#为研究对象,考察了文献中常用的5种预处理方法底泥微生物群落平均颜色变化率( Average well color development,AWCD)、碳...为探讨不同预处理方法对养殖池塘底泥Biolog Eco板分析结果的影响,以南美白对虾养殖池塘周边底泥1#和中部底泥2#为研究对象,考察了文献中常用的5种预处理方法底泥微生物群落平均颜色变化率( Average well color development,AWCD)、碳源利用模式和多样性指数的差异。结果表明,培养3 d后周边底泥1#样品异养细菌总数(7.73×10^5 CFU·mL^-1)显著低于中部底泥2#样品(3.48×10^7 CFU·mL^-1)(P<0.05)。不同预处理方式底泥微生物群落的AWCD值、六类碳源利用情况、多样性指数及主成分分析差异较大。240 h时,1#底泥方法4和方法5除对胺类碳源的利用(方法5显著高于方法4)外,微生物群落的上述其他指标差异均不显著(P>0.05),但有多项指标显著优于方法1、2、3(P<0.05);2#底泥方法5处理微生物群落的多项指标显著优于方法1~4;且无论在1#底泥还是2#底泥,方法5主成分分析的平行点均较为集中,说明其平行性较好。因此建议采用方法5进行养殖池塘底泥的预处理,即10%底泥稀释液在250 r·min^-1转速下振荡30 min,经600 r·min^-1离心10 min,离心上清液直接接入Biolog Eco板。展开更多
基金Supported by National and International Scientific and Technological Cooperation Project"The application of Microbial Agents on Mining Reclamation and Ecological Recovery"(2011DFR31230)Key Project of Shanxi academy of Agricultural Science"The Research and Application of Bio-organic Fertilizer on Mining Reclamation and Soil Remediation"(2013zd12)Major Science and Technology Programs of Shanxi Province"Key Technology Research and Demonstration of mining waste land ecosystem Restoration and Reconstruction"(20121101009)~~
文摘As one of the main methods of microbial community functional diversity measurement, biolog method was favored by many researchers for its simple oper- ation, high sensitivity, strong resolution and rich data. But the preprocessing meth- ods reported in the literatures were not the same. In order to screen the best pre- processing method, this paper took three typical treatments to explore the effect of different preprocessing methods on soil microbial community functional diversity. The results showed that, method B＇s overall trend of AWCD values was better than A and C＇s. Method B＇s microbial utilization of six carbon sources was higher, and the result was relatively stable. The Simpson index, Shannon richness index and Car- bon source utilization richness index of the two treatments were B〉C〉A, while the Mclntosh index and Shannon evenness were not very stable, but the difference of variance analysis was not significant, and the method B was always with a smallest variance. Method B＇s principal component analysis was better than A and C＇s. In a word, the method using 250 r/min shaking for 30 minutes and cultivating at 28 ℃ was the best one, because it was simple, convenient, and with good repeatability.
基金Supported by Special Project of"Grassland Talents"in Inner Mongolia.
文摘[Objectives]The paper was to establish a molecular biological method for identification of bacterial strains.[Methods]The thalli of standard bacterial strains existing in the laboratory were collected and genomic DNA was extracted for amplification of 16S rDNA and gyrB gene.The 16S rDNA and gyrB gene sequences were obtained after sequencing.Sequences were aligned and analyzed via EzBioCloud and NCBI database,and phylogenetic trees were constructed to determine the species relationship of strains.Meantime,they were compared with known strains.[Results]This method could identify 5 standard strains accurately to the species level.The 16S rDNA and gyrB gene sequences were aligned and analyzed in EzBioCloud database and NCBI database.The strain with the max score was consistent with the known strain.And the query cover and ident were both above 99%.[Conclusions]The established molecular biological method for identification of bacterial strains by 16S rDNA and gyrB gene has good accuracy,which effectively solves the problem that the laboratory identification of bacteria relies on traditional methods and the accuracy can not be guaranteed,and further improves the identification ability of laboratory bacterial strains.
文摘Terbinafine is a new powerful antifungal agent indicated for both oral and topical treatment of myco- sessince. It is highly effective in the treatment of determatomycoses. The chemical and pharmaceutical analysis of the drug requires effective analytical methods for quality control and pharmacodynamic and pharmacokinetic studies. Ever since it was introduced as an effective antifungal agent, many methods have been developed and validated for its assay in pharmaceuticals and biological materials. This article reviews the various methods reported during the last 25 years.
基金the National Natural Science Foundation of China （90502006） the Project of Innovative Group in Northwest A＆F University.
文摘Although many biological methods are used to determine soil nitrogen supplying capacity, there are certain differences in the results for different types of soils and various ways of measurement due to the complexity of soil N conformation, the high variance of soil and microorganism, and the difference of environment. Therefore, it is not clear about which biologic incubation method is better for calcareous soil. In this study, pot experiments were performed by using 25 different calcareous surface soil samples on the Loess Plateau and taking the N uptake of wheat and corn with leaching soil initial nitrate and without leaching in pot experiments as the control to investigate the difference of eight biological incubation methods for reflecting soil nitrogen supply capacity. The eight biological methods are waterlogged incubation, aerobic incubation for 2 weeks and for 4 weeks, dry-wet alternation aerobic incubation for 2 weeks, long-term alternate leaching aerobic incubation （and N mineralization potential, No）, short-term leaching aerobic incubation, microbial biomass carbon （Bc）, and microbial biomass nitrogen （BN） method, respectively. Among these methods, the dry-wet alternation aerobic incubation and aerobic incubation for 4 weeks were the modification of the method of aerobic incubation for 2 weeks according to the actual farmland moisture. The results showed that the correlation coefficients between these methods and crop uptake N with leaching soil initial nitrate were 0.530, 0.700, 0.777, 0.768, 0.764 （and 0.790, No）, 0.650, 0.555, and 0.465, respectively （r0.05 = 0.369, r0.0l = 0.505）. While without leaching soil initial nitrate, their coefficients were 0.351, 0.963, 0.962, 0.959, 0.825 （and0.812, No）, 0.963, 0.289, and 0.095, respectively （r0.05 = 0.369, r0.01 = 0.505）. In conclusion, excluding the soil initial nitrate, the correlation coefficients between the eight methods and crop uptake N were, from high to low, N0, aerobic incubation for 4 weeks, dry-wet alternation aerobic incubation for 2 weeks, and long-term alternate leaching aerobic incubation, while including the soil initial nitrate the correlation coefficients between them increased significantly and the values were all beyond 0.950 for these four methods, including aerobic incubation for 2 weeks and for 4 weeks, dry-wet alternation aerobic incubation for 2 weeks and short-term leaching aerobic incubation. The waterlogged incubation method, Bc and BN in the calcareous soil, had lower correlation coefficient with crop uptake nitrogen compared with other methods. Thus, dry-wet alternation aerobic incubation for 2 weeks was a better index for evaluating calcareous soil N supply capacity due to some other methods having disadvantages and not suitable for the actual farmland characteristics.
文摘Water is essential for human life and it’s expected to be clean and safe. In Cameroon, government efforts to improve access to drinking water are mitigated. Many households are suffering from chronic water shortages leading to the majority of people using doubtful water sources. This study was carried out in accordance with guidelines produced by the STARBIOS2-EU funded project on Responsible Research and Innovation and aimed to assess the microbiological quality of water samples collected from domestic water sources in 3 divisions of the West region of Cameroon. 22 water samples from well water, stream, water pump and river were aseptically collected. At each sampling point, 50 mL of sample was taken aseptically and immediately transported to the laboratory for analysis. The detection of Coliforms bacteria was done using Micro Biological Survey (MBS) method. 1 mL of each sample was inoculated in the Coliforms MBS (Coli MBS) vial initially rehydrated with 10 mL of sterile distilled water. The Coli MBS vials were closed, shaken for homogenization, and then incubated at 37<span style="white-space:nowrap;">°</span>C. From the initial red color of the Coli MBS vials, changes in color to yellow of the reaction vials were monitored at three different time intervals (12 h, 19 h and 24 h), corresponding to three levels of bacterial concentration. All positives samples on MBS method were selected to determine the presence of <em>E. coli</em> Loop full broths of Coli MBS vials were taken;streaked into the eosin methylene blue (EMB) agar plate and incubated at 37°C for 24 hours. <em>E. coli</em> was confirmed by observing green metallic sheen on EMB agar plate. The biochemical indole, methyl red, Voges-Proskauer and citrate (IMViC) test was performed to determine the complete microbiological profile of the water samples. Almost all the water samples were contaminated with Total Coliforms (TC). A high concentration of TC (>10<sup>3</sup> CFU/mL) was found in 8 samples (36.4%), a medium concentration (10 < x < 10<sup>3</sup> CFU/mL) was observed in 10 samples (45.5%) and 2 samples (9.1%) were low concentrated (1 < x < 10 CFU/mL). 8 samples were positive for the presence of <em>E. coli</em> by observing the green metallic sheen on EMB agar plates. The IMViC test confirmed the presences of 5 bacteria species: <em>Enterobacter spp., Klebsiella spp., E. coli spp., Salmonella spp.</em> and Shigella spp. We recommend integrating sanitary assessment in the design and implementation of water supply projects. Regular water purification using proper methods and maintenances of the water point. Regular microbiological quality assessment of water intended for human consumption should be planned and carried out.
基金Supported by Special Fund of China Agricultural (Sugar) Industry Research System(CARS-170303)Training Project of Yunling Industry and Technology Leading Talents "Control of Sugarcane Harm-ful Organisms"(2018LJRC56)Special Fund of Agricultural Industry Research System in Yunnan Province
文摘To screen new biological formulations, accurate and efficient application technology, field test was conducted with 72% Bacillus thuringiensis(Bt)·monosultap WP, 8% lambda-cyhalothrin·emamectin benzoate SA and 3.6% lambda-cyhalothrin·Bt SA through manual spraying and unmanned aerial vehicle spraying. Test results and comprehensive evaluation analysis demonstrated that 72% Bt·monosultap WP and 8%lambda-cyhalothrin·emamectin benzoate SA by manual spraying and unmanned aerial vehicle spraying had good prevention and control effect on strains and internodes damaged by Tryporyza intacta Snellen in middle and late stage, which were ideal new biological formulations with high effi-ciency and low risk for prevention and control of T. intacta in middle and late stage, and could be popularized in sugarcane area. 72% Bt·monosultap WP at the dose of 3 000 g/hectare and 8% lambda-cyhalothrin·emamectin benzoate SA at the dose of 750 mL/hectare could be sprayed in mid September at the peak occurrence period of the forth and fifth generations of T. intacta and Proceras venosatus. Agents were diluted with 900 kg water per hectare, and manually sprayed with electric knapsack sprayer; or agents were diluted with 15 kg of Haoyang aerial control special addi-tives and water per hectare, and sprayed with unmanned aerial vehicle. The control effect against borer-damaged strain rate was above 81.3% and that against borer-damaged internode rate was above 88.6%.
基金supported by the National Natural Science Foundation of China (Nos.61806107 and 61702135)。
文摘We propose a hierarchical multi-scale attention mechanism-based model in response to the low accuracy and inefficient manual classification of existing oceanic biological image classification methods. Firstly, the hierarchical efficient multi-scale attention(H-EMA) module is designed for lightweight feature extraction, achieving outstanding performance at a relatively low cost. Secondly, an improved EfficientNetV2 block is used to integrate information from different scales better and enhance inter-layer message passing. Furthermore, introducing the convolutional block attention module(CBAM) enhances the model's perception of critical features, optimizing its generalization ability. Lastly, Focal Loss is introduced to adjust the weights of complex samples to address the issue of imbalanced categories in the dataset, further improving the model's performance. The model achieved 96.11% accuracy on the intertidal marine organism dataset of Nanji Islands and 84.78% accuracy on the CIFAR-100 dataset, demonstrating its strong generalization ability to meet the demands of oceanic biological image classification.
文摘为探讨不同预处理方法对养殖池塘底泥Biolog Eco板分析结果的影响,以南美白对虾养殖池塘周边底泥1#和中部底泥2#为研究对象,考察了文献中常用的5种预处理方法底泥微生物群落平均颜色变化率( Average well color development,AWCD)、碳源利用模式和多样性指数的差异。结果表明,培养3 d后周边底泥1#样品异养细菌总数(7.73×10^5 CFU·mL^-1)显著低于中部底泥2#样品(3.48×10^7 CFU·mL^-1)(P<0.05)。不同预处理方式底泥微生物群落的AWCD值、六类碳源利用情况、多样性指数及主成分分析差异较大。240 h时,1#底泥方法4和方法5除对胺类碳源的利用(方法5显著高于方法4)外,微生物群落的上述其他指标差异均不显著(P>0.05),但有多项指标显著优于方法1、2、3(P<0.05);2#底泥方法5处理微生物群落的多项指标显著优于方法1~4;且无论在1#底泥还是2#底泥,方法5主成分分析的平行点均较为集中,说明其平行性较好。因此建议采用方法5进行养殖池塘底泥的预处理,即10%底泥稀释液在250 r·min^-1转速下振荡30 min,经600 r·min^-1离心10 min,离心上清液直接接入Biolog Eco板。
