目的分析副溶血弧菌O10:K4血清型O抗原基因簇的分子特征,并构建基于基因组的分子血清型预测数据库。方法从美国国家生物技术信息中心Assembly数据库获取副溶血弧菌O抗原基因簇序列,使用blastn、fastANI、Sourmash和p i x y工具分析序列...目的分析副溶血弧菌O10:K4血清型O抗原基因簇的分子特征,并构建基于基因组的分子血清型预测数据库。方法从美国国家生物技术信息中心Assembly数据库获取副溶血弧菌O抗原基因簇序列,使用blastn、fastANI、Sourmash和p i x y工具分析序列相似性和多态性,使用g u b b i n s进行重组分析,并构建了副溶血弧菌分子血清型预测数据库。结果O10:K4的O抗原基因簇(OL10V1)与传统O10血清型基因簇(OL10)序列差异显著,而与OL4最为相似。公共数据库中116个OL10V1全长序列仅存在1个单核苷酸突变。OL10V1携带的IS1634和ISVa2转座酶基因广泛分布于弧菌属,提示该变异体可能通过水平基因转移形成。结论本研究揭示了O10:K4血清型快速传播的潜在分子机制,构建的分子血清型数据库可为基因组监测和溯源提供关键技术支撑。展开更多
Melioidosis is a zoonotic infectious disease caused by Burkholderia(B.)pseudomallei.It is predominantly endemic in Southeast Asia[1-3].Clinical manifestations are often non-specific,commonly presenting as pneumonia or...Melioidosis is a zoonotic infectious disease caused by Burkholderia(B.)pseudomallei.It is predominantly endemic in Southeast Asia[1-3].Clinical manifestations are often non-specific,commonly presenting as pneumonia or skin abscesses[4],and may progress to severe sepsis with a high case-fatality rate of 10%-50%[5].Due to its early flu-like symptoms,melioidosis is frequently misdiagnosed by clinicians in non-endemic regions.Beijing,located in the North Temperate Zone,rarely reports melioidosis cases;the lack of awareness among healthcare professionals may lead to misdiagnosis and fatal outcomes.展开更多
文摘目的分析副溶血弧菌O10:K4血清型O抗原基因簇的分子特征,并构建基于基因组的分子血清型预测数据库。方法从美国国家生物技术信息中心Assembly数据库获取副溶血弧菌O抗原基因簇序列,使用blastn、fastANI、Sourmash和p i x y工具分析序列相似性和多态性,使用g u b b i n s进行重组分析,并构建了副溶血弧菌分子血清型预测数据库。结果O10:K4的O抗原基因簇(OL10V1)与传统O10血清型基因簇(OL10)序列差异显著,而与OL4最为相似。公共数据库中116个OL10V1全长序列仅存在1个单核苷酸突变。OL10V1携带的IS1634和ISVa2转座酶基因广泛分布于弧菌属,提示该变异体可能通过水平基因转移形成。结论本研究揭示了O10:K4血清型快速传播的潜在分子机制,构建的分子血清型数据库可为基因组监测和溯源提供关键技术支撑。
基金supported by the Capital’s Funds for Health Improvement and Research(2024-1G-4362)the National Key Program for Infectious Disease of China(2018ZX10714002-003-002).
文摘Melioidosis is a zoonotic infectious disease caused by Burkholderia(B.)pseudomallei.It is predominantly endemic in Southeast Asia[1-3].Clinical manifestations are often non-specific,commonly presenting as pneumonia or skin abscesses[4],and may progress to severe sepsis with a high case-fatality rate of 10%-50%[5].Due to its early flu-like symptoms,melioidosis is frequently misdiagnosed by clinicians in non-endemic regions.Beijing,located in the North Temperate Zone,rarely reports melioidosis cases;the lack of awareness among healthcare professionals may lead to misdiagnosis and fatal outcomes.
