摘要
【目的】基本螺旋-环-螺旋(bHLH)转录因子在植物的生长、代谢和对生物/非生物胁迫的响应等过程中发挥着重要作用。进行小果白刺(Nitraria sibirica)bHLH全基因组鉴定与生物信息学分析,可为后续bHLH基因克隆和进一步生物学功能研究提供参考。【方法】用生物信息学和分子生物学方法,在全基因组水平对小果白刺bHLH基因家族进行系统进化分析并利用转录组数据及定量qRT-PCR分析小果白刺bHLH基因家族对盐胁迫的响应。【结果】基于小果白刺基因组数据共鉴定出88个bHLH转录因子,不均匀地分布在12条染色体上,并有2对串联重复基因,根据系统进化树可将其划分为16亚群;顺式作用元件分析显示,88个bHLH转录因子含有多种与环境和胁迫相关的顺式作用元件;基因表达模式分析表明,小果白刺bHLHs在盐胁迫过程中响应程度不一,qRT-PCR结果显示6个bHLH基因在不同组织中表达特异性显著;盐胁迫下,bHLH 1、bHLH 24、bHLH 70、bHLH 73在叶中表达显著上调,而bHLH 2、bHLH 30在叶中的表达下调;在根中这6个基因表现出相同的表达模式,均显著上调;在茎中除了bHLH 2有下调表达外,其他5个基因均为上调表达。【结论】鉴定出88个小果白刺bHLH转录因子,其基因结构和结构域较保守,染色体上有2对串联重复基因;盐胁迫处理后,小果白刺bHLH基因家族成员发生响应,在根、茎和叶中均有表达,可能与该家族成员具有抗盐功能有关。该研究为进一步阐明小果白刺bHLH转录因子家族基因的功能奠定基础。
【Objective】The basic helix-loop-helix(bHLH)transcription factors play critical roles in plant growth,metabolism,and responses to biotic/abiotic stresses.Genome-wide identification and bioinformatics analysis of the bHLH gene family in Nitraria sibirica will provide foundational insights for subsequent bHLH gene cloning and further biological studies.【Method】Bioinformatics and molecular biology approaches were employed to systematically analyze the phylogenetic relationships of the N.sibirica bHLH gene family at the genome-wide level.Transcriptome datasets and quantitative reverse transcription-PCR(qRT-PCR)were employed to analyze the response of the bHLH genes under to stress.【Result】A total of 88 bHLH transcription factors were identified from the N.sibirica genome,unevenly distributed across 12 chromosomes with two pairs of tandemly duplicated gene.Phylogenetic analysis classified these members into 16 distinct subclades.Cis-acting element analysis revealed that the 88 bHLH genes harbored multiple environment-and stress-responsive regulatory elements.Expression profiling demonstrated differential responses of N.sibirica bHLH genes to salt stress.qRT-PCR results further demonstrated that six bHLH genes(bHLH 1,bHLH 2,bHLH 24,bHLH 30,bHLH 70 and bHLH 73)exhibited pronounced tissue-specific expression patterns.Under salt stress,bHLH 1,bHLH 24,bHLH 70 and bHLH 73 were significantly upregulated in leaves,while bHLH 2 and bHLH 30 were down regulated in leaves.In roots,all six genes displayed marked upregulation.In stems,five genes(bHLH 1,bHLH 24,bHLH 30,bHLH 70 and bHLH 73)were upregulated,whereas bHLH 2 showed down regulation.【Conclusion】This study identified 88 conserved bHLH transcription factors in N.sibirica,characterized by conserved gene structures and protein domains,along with two tandem duplication events on chromosomes.The differential expression of bHLH genes in roots,stems and leaves under salt stress suggests their potential involvement in salt tolerance mechanisms.These findings establish a critical foundation for elucidating the functional roles of the bHLH transcription factor family in N.sibirica.
作者
张建军
吴京乡
方昊
朱礼明
成铁龙
ZHANG Jianjun;WU Jingxiang;FANG Hao;ZHU Liming;CHENG Tielong(College of Ecology and Environment,Nanjing Forestry University,Co-Innovation Center for Sustainable Forestry in Southern China,Nanjing 210037,China;State key Laboratory of Tree Genetics and Breeding,Nanjing Forestry University,Nanjing 210037,China)
出处
《南京林业大学学报(自然科学版)》
北大核心
2025年第6期102-114,共13页
Journal of Nanjing Forestry University:Natural Sciences Edition
基金
国家自然科学基金项目(31770715)。
关键词
小果白刺
bHLH转录因子
盐胁迫
基因表达
Nitraria sibirica
bHLH transcription factors
salt stress
gene expression
