期刊文献+

高温下环状五肽构象的分子模拟 被引量:4

Molecular Simulation of Cyclic Penta-peptide at High Temperature
在线阅读 下载PDF
导出
摘要 运用能量优化和随机动力学模拟了高温下环状五肽的构象 ,通过能量优化产生粗结构 ,实现了对此粗结构的随机动力学模拟。结果表明 ,对本文的研究对象 ,该模拟方法是高效合理的 ,该方法提供了一种生物分子结构和功能研究的新思路 ,模拟结果对从分子水平上揭示高温环境下生物分子的空间结构提供了理论依据 。 Energy minimization and stochastic dynamics simulation of cyclic penta-peptide at high temperature was carried out. Starting from the structure obtained from energy minimization, a spatial structure of the cyclic penta-peptide was calculated by stochastic dynamics. The results showed that the simulation method is efficient and possible for the object of our study. At the same time, the method can apply to study the relation between structure and function of protein. The simulation results present a theoretical foundation on biomolecular spatial structure in high temperature environment. The work is valuable to protein engineering and molecular design. +
作者 邱榕 范维澄
出处 《火灾科学》 CSCD 2000年第4期45-50,共6页 Fire Safety Science
关键词 温度 能量优化 分子模拟 环状五肽构象 火灾 temperature energy minimization stochastic dynamics molecular simulation
  • 相关文献

参考文献15

  • 1邱榕,范维澄,王清安,廖光煊.火灾中温度升高对蛋白质构象影响的计算机模拟(Ⅰ)[J].火灾科学,2000,9(3):14-20. 被引量:6
  • 2[2]C.A Schiffer,V.Dotsch,K.Wuthrich,W.F.van Gunsteren.Exploring the rote of the solvent in the denaturation of a protein:a molecular dynamics study of the DNA binding domain of 434 repressor[J].Biochemistry,1995,34:15057~15067
  • 3[3]Church WB.Homology modeling of histidine-containing phosphor carrier protein and eosinophil-derived neurotoxin:construction of models and comparison with experiment[J].Proteins,1995,23:422~432
  • 4[4]Zhang CT,Zhong R.A new criterion to classify globular proteins based on their secondary structure contents[J].Bioinformatics,1998,14(10):1~9
  • 5[5]Aquist J.Calculation of absolute binding free energies for charged ligands and effects of long-range electrostatic interactions[J].J Comp Chem,1996,17:1587~1597
  • 6[6]Kono H,Doi J.A new method for side-chain conformation prediction using a hopfield network and produced rotamers[J].J Comp Chem,1996,17:1667~1689
  • 7[7]Morris GM,Goodsell DS,Huey R.Distributed automated docking of flexible ligands to proteins:parallel applications of Auto Dock 2.4[J].J Comp Aided Mol Design,1996,10:293~315
  • 8[8]Dill KA.Principle of protein folding-a perspective from simple exact models[J].Protein Science,1995,4:561-602
  • 9[9]Yue KaiZhi,Dill KA.Forces of tertiary structural organization in globular proteins[J].Proc.Natl.Acad.Sci.USA,1995,92:146~150
  • 10孙之荣,郭青.蛋白质中原子与基团的可及性的一种新计算方法及其应用[J].生物物理学报,1996,12(3):471-476. 被引量:5

二级参考文献9

  • 1Lee B,J Mol Biol,1971年,55卷,3期,379页
  • 2BohmHJ.Thedevelopmentofasimpleempiricalscoringfunctiontoestimatethebindingconstantforapro tein ligandcomplexofknownthree dimensionalstructure[].JComAidedMolDes.1994
  • 3W .F .vanGunsteren.Moleculardynamicsstudiesofproteins[].CurrentOpinioninStructuralBiology.1993
  • 4BohmHJ.Towardstheautomaticdesignofsyntheticallyaccessibleproteinligands:peptides,amidesandpep tidomimetics[].JCompAidedMolDes.1996
  • 5H .Bekker,E .J.Dijkstra,H .J .C .Berendsen,M .K .R .Renardus.Anefficient,boxshapeindependentnon bondedforceandvirialalgorithmformoleculardynamics[].MolecularSimulation.1995
  • 6A .E .Torda,W .F .vanGunsteren.AlgorithmsForClusteringMolecularDynamicsConfigurations[].JComputChem.1994
  • 7D .vanderSpoel,H .J.Vogel,H .J.C .Berendsen.MolecularDynamicsSimulationsofN Terminalpep tidesfromaNucleotideBindingProtein[].Proteins.1996
  • 8W .F .VanGunsteren,P .H .Hunenberger,H .Kovacs,A .E .Mark,C .A .Schiffer.Investigationofproteinunfoldingandstabilitybycomputersimulation[].PhilTransR Soc Lond B.1995
  • 9H .J.C .Berendsen.Bio MolecularDynamicsComesofAge[].Science.1996

共引文献9

同被引文献19

二级引证文献56

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部