期刊文献+

基于遗传算法优化决策树的肿瘤基因分类研究

The Classification of Tumor Gene Expression Profiles Based on Genetic Algorithm and Decision Tree
在线阅读 下载PDF
导出
摘要 基于多类别肿瘤基因表达谱数据集,从研究肿瘤与正常组织的分类入手,对肿瘤分类特征基因选取问题进行分析和研究。将决策树算法应用到肿瘤基因表达谱分类研究中,尝试引入遗传算法,对决策树分类规则进行优化。试验结果表明,在样本有限的情况下,该方法比单个决策树具有更高的分类精度。 The problem on analying the Multi-Class tumor gene expression profile datasets, and researching the classification of tumors and normal tissues start, tries to find the infor- mative genes for distinguishing tumor from normal tissues. Using the decision tree to the classification of tumor gene expression profiles, and tries to introduce genetic algorithm to optimize the classification rules derived by the decision tree. The result shows that this method can distinguish objects accurately and improve the precision.
作者 谢芬 XIE Fen (Computer Office of Teaching and Research, Binzhou Medical College, Binzhou 256600, China)
出处 《电脑知识与技术》 2010年第4期2493-2495,共3页 Computer Knowledge and Technology
基金 滨州医学院科技计划资助项目(BY2007KJ50)
关键词 肿瘤 遗传算法 肿瘤基因表达谱 决策树 特征基因 tumor genetic algorithm gene expression profiles decision tree informative gene
  • 相关文献

参考文献8

  • 1Golub R R,Slonim D K,Tamayo P, et al.Molecular classification of cancer:class discovery and class prediction by gene expression monitoring[J].Science, 1999,289:531-537.
  • 2Singh D,Febbo P,RossK,et al.Gene expression correlates of clinical prostate cancer behavior[J].Cancer Cell,2002,1(2):203-209.
  • 3Khan J,Wei J S,Ringner M,et al.Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural net works[J].Nature Medicine,2001,7(6):637-679.
  • 4Alon U,Barkai N,Notterman D A,et al.Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays[J].Proc Natl Acad Sci Usa,1999,96:6745-6750.
  • 5Ramaswamy S,Golub T R.DNA microarrays in clinical oncology[J].Journal of Clinical oncology,2002,20(7):1932-1941.
  • 6Li X.,Rao S.,Zhang T.et al.An ensemble method for gene discovery based on DNA microarray data. Science in China(Series C),2004,47 (5):396-405.
  • 7李颖新,李建更,阮晓钢.肿瘤基因表达谱分类特征基因选取问题及分析方法研究[J].计算机学报,2006,29(2):324-330. 被引量:45
  • 8阮晓钢,晁浩.肿瘤识别过程中特征基因的选取[J].控制工程,2007,14(4):373-375. 被引量:15

二级参考文献21

  • 1Lander E.S..Array of hope.Nature Genetics,1999,21(Supplement 1):3~4.
  • 2Ramaswamy S.,Golub T.R..DNA microarrays in clinical oncology.Journal of Clinical Oncology,2002,20 (7):1932 ~1941.
  • 3Ramaswamy S.,Tamayo P.,Rifkin R.et al..Multiclass cancer diagnosis using tumor gene expression signatures.Proceedings of the National Academy of Sciences of the United States of America,2001,98(26):15149~15154.
  • 4Golub T.R.,Slonim D.K.,Tamayo P.et al..Molecular classification of cancer:Class discovery and class prediction by gene expression monitoring.Science,1999,(5439):531~537.
  • 5Hedenfalk I.,Duggan D.,Chen Y.et al..Gene-expression profiles in hereditary breast cancer.New England Journal of Medicine,2001,344(8):529~548.
  • 6Li X.,Rao S.,Zhang T.et al..An ensemble method for gene discovery based on DNA microarray data.Science in China(Series C),2004,47(5):396~405.
  • 7Tibshirani R.,Hastie T.,Narasimhan B.et al..Diagnosis of multiple cancer types by shrunken centroids of gene expression.Proceedings of the National Academy of Sciences of the United States of America,2002,99(10):6567~6572.
  • 8Khan J.,Wei J.S.,Ringner M.et al..Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks.Nature Medicine,2001,7(6):673~679.
  • 9Guyon I.,Weston J.,Barnhill S.et al..Gene selection for cancer classification using support vector machines.Machine Learning,2000,46(13):389~422.
  • 10Kira K.,Rendell L.A..The feature selection problem:Traditional methods and a new algorithm.In:Swartout W.ed..Proceedings of the 10th National Conference on Artificial Intelligence.Cambridge,MA:AAAI Press/The MIT Press,1992,129~134.

共引文献55

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部