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同源模建法建立和检验人类新基因ZNF191锌指基序的三维构象 被引量:2

Construction and Examination of the Confromation of ZNF191 Zinc-Finger Motifs Using Homology-Based Modeling
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摘要 以实验室自行克隆的新基因ZNF191顺序为材料,按三联体密码转换出锌指基因编 码的4个锌指结构域ZNF191a,b,c和d的蛋白质一级顺序,并将它们与已用晶体衍射法确 证了空间构象的7个Cys2His2(C2H2)型锌指进行同源比较,从中发现锌指7ZNF和1ZNF的 一级结构与待检验的锌指顺序同源度高且间隙较小.然后,运用 QUANTA软件包对 4个锌 指结构区 ZNF191a,b,c和d分别进行了计算机三维结构模拟,并以3D profile方法检验了该 结构的准确程度.分析结果提示:ZNF191基因的4个潜在锌指结构区均能够形成正常锌指 结构. Three dimension conformation of four putative zinc-finger motifs coded by a novel gene ZNF191 cloned in our laboratory was constructed and examined by using the homologybased modeling system. Data of 15 known zinc-finger motifs, 7 of which are C2H2 type,in PDB protein database were selected and used to compare with linear sequence of the zinc-finger motifs to be tested. An alignment was made between the sequence of four putative zinc-finger motifes and that of seven C2H2-type motifs seperately. Using QUANTA software package, each con formation relating to putative zinc-finger motifs was constructed and then examined by 3D profile method. It is shown that all of the putative zinc-finger motifs can form a zincfinger conformation properly.
出处 《复旦学报(自然科学版)》 CAS CSCD 北大核心 1998年第2期123-128,共6页 Journal of Fudan University:Natural Science
基金 国家自然科学基金  上海市科技发展基金
关键词 锌指蛋白 同源模建 QUANTA软件包 ZNF191 基因 zinc-finger protein homology-based modeling QUANTA software 3D profile
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参考文献2

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