期刊文献+

细菌基因组重复序列PCR技术及其应用 被引量:37

Repetitive-Element PCR of Bacteria and Its Application
在线阅读 下载PDF
导出
摘要 细菌中散在分布的DNA重复序列近年来不断被报道,基因外重复回文序列和肠细菌基因间共有重复序列是两个典型的原核细胞基因组散在重复序列。重复序列在染色体上的分布和拷贝数具种间特异性,用它们的互补序列作为引物,以细菌基因组DNA为模板进行PCR扩增反应,反应产物的琼脂糖电泳可以提供非常清晰的DNA指纹图谱,使用此图谱既可对各种微生物进行快速分型及鉴定,又可对它们进行DNA水平上的遗传多样性分析。细菌基因组重复序列PCR技术具有简捷、快速、结果稳定等特点,可对细菌进行分子标记,用于菌株分型、分类鉴定和亲缘关系等方面的研究。 Dispersed repetitive DNA sequences in bacteria have been continuously reported recently. Repetitive Extragenic Palindromic (REP) elements and Electro-Bacterial Repetitive Intergenic Consensus (ERIC) sequences are two synthesized prokaryotic repetitive elements. Distribution of the elements in chromosome and copies possesses interspecific specificity, using their complementary feature as a primer and genotypic DNA of bacteria as a template to carry out PCR amplification reaction, the agarose gel electrophoresis of the reaction products could provide dear DNA fingerprint for rapid analyzing different bacterial species and strains, and could carry out diversity analysis of their genetic. Bacteria repetitive-element PCR technique is a simple, fast, stable in result, and can be used as molecule marker to study molecular classification, identification, and phylogenetic relationship of strains and species.
出处 《微生物学杂志》 CAS CSCD 2006年第3期90-93,共4页 Journal of Microbiology
关键词 细菌 重复序列PCR 分类鉴定 bacteria repetitive-element PCR classification and identification
  • 相关文献

参考文献15

  • 1Versalovic J,Lupski J R.Molecular detection and genotyping pathogens:more accurate and rapid answers[J].Trends in Microbiology 10 (Suppl) A TRENDS Guide to Infectious Diseases,2002:15-21.
  • 2Bloch C A,Rode C K.Pathogenicity island evaluation in Escherichia coli K1 by crossing with laboratory strain K-12[J].Infect.Immun,1996,64:3218-3223.
  • 3Versalovic J,Koeuth T,Lupski J R.Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes[J].Nucleic Acids Res,1991,19(24):6823-6831.
  • 4Dalla-Costa L M.,I rino K,Rodrigues J,et al.Characterisation of diarrhoeagenic Escherichia coli clones by ribotyping and ERIC-PCR[J].J Med Microbiol,1998,47(3):227-234.
  • 5Houf K,De Zutter L,Van Hoof J,et al.Assessment of the Genetic Diversity among Arcobacters Isolated from Poultry Products by Using Two PCR-Based Typing Methods[J].Appl Environ Microbiol,2002,68(5):2172-2178.
  • 6孙永艳,申泉,李艳琴.肠杆菌基因间重复共有序列及ERIC-PCR[J].生命的化学,2004,24(4):288-290. 被引量:15
  • 7Higgins C F,McLaren R S,Newbury S F.Repetitive extragenic palindromic sequences,mRNA stability and gene expression:evolution by gene conversion[J].Gene,1988,72:3 -14.
  • 8Hulton C S,Higgins C F,Sharp P M.ERIC sequences:a novel family of repetitive elements in the genomes of Escherichia coli,Salmonella typhimurium and other enterobacteria[J].Mol Microbiol,1991,5:825-834.
  • 9张建丽,刘志恒.链霉菌的rep-PCR基因指纹分析[J].微生物学报,2004,44(3):281-285. 被引量:19
  • 10Faber J M,Peterkin P I.Listeria monocytogenes,a foodborne pathogen[J].Microbiological Review,1991,55:476-511.

二级参考文献40

  • 1李艳琴,孙永艳,崔丽方,申泉.ERIC-PCR在人工混合菌体系中的检出灵敏度[J].微生物学通报,2004,31(4):61-64. 被引量:15
  • 2Thompson J D, Gibson T J, Plewniak F, et al.The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.Nucleic Acids Res, 1994, 22: 4673-4680.
  • 3Saitou N, Nei M.The neighbor-joining method: a new method for reconstructing phylogenetic trees.Mol Biol Evol, 1987, 4: 406-425.
  • 4Felsenstein J.PHYLIP: Phylogeny Inference Package, version 3.6.Seattle: Department of Genetics, University of Washington, 1993.
  • 5Waksman S A, Henrici A T.The nomenclature and classification of the actinomycetes.J Bacteriol, 1943, 46: 337-341.
  • 6Williams S T, Goodfellow M, Alderson G, et al.Numerical classification of Streptomyces and related genera.J Gen Microbiol, 1983, 129: 1743-1813.
  • 7Anderson A S, Wellington E M H.The taxonomy of Streptomyces and related genera.Int J Syst Envol Bacteriol, 2001, 51: 797-814.
  • 8Wayne L G, Brenner D J, Colwell R R, et al.International Committee on Systematic Bacteriology.Report of the ad hoc committee on reconciliation of approaches to bacterial systematics.Int J Syst Bacteriol, 1987, 37: 463-464.
  • 9Versalovic J, Koeuth T, Lupski J R.Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes.Nucleic Acids Res, 1991, 19: 6823-6831.
  • 10Versalovic J, Schneider M, de Bruijin F J, et al.Genomic fingerprinting of bacteria using repetitive sequence based PCR (rep-PCR).Methods Mol Cell Biol, 1994, 5: 25-40.

共引文献58

同被引文献600

引证文献37

二级引证文献245

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部