Photorespiration consumes photosynthetically fixed carbon and reduces yields by 20%–50%in C3 crops.In an attempt to increase photosynthetic efficiency in rice by bypassing the carbon-consuming process of photorespira...Photorespiration consumes photosynthetically fixed carbon and reduces yields by 20%–50%in C3 crops.In an attempt to increase photosynthetic efficiency in rice by bypassing the carbon-consuming process of photorespiration,a photorespiratory bypass consisting of Chlamydomonas reinhardtii glycolate dehydrogenase and Cucurbita maxima malate synthase(termed the GMS bypass)was introduced into the rice cultivar Zhonghua 11 and osplgg1b,a mutant of the rice chloroplast glycolate transporter,to generate GMS/ZH11 and GMS/osplgg1b transgenic plants.The GMS bypass reduced photorespiration and increased photosynthesis in the transgenic plants.The straw biomass of GMS/ZH11 and GMS/osplgg1b increased by up to 16.0%and 85.7%,respectively.The yield of GMS/ZH11 increased by 22.0%–34.7%in paddy fields.Thus,the GMS bypass can increase photosynthetic efficiency and yield in rice.展开更多
Prohibitin(PHB)plays critical roles in plant growth and development.In this study,we utilized CRISPR/Cas9 gene-editing technology to generate homozygous OsPHB2 knockout transgenic plants,designated cr-osphb2.The cr-os...Prohibitin(PHB)plays critical roles in plant growth and development.In this study,we utilized CRISPR/Cas9 gene-editing technology to generate homozygous OsPHB2 knockout transgenic plants,designated cr-osphb2.The cr-osphb2 line exhibited wider leaves,dwarfism,and shorter panicles.Subcellular localization results indicated that OsPHB2 localizes to mitochondria.Under salt stress conditions,cr-osphb2 exhibited enhanced tolerance.Haplotype(Hap)analysis identified three major Haps(Hap1,Hap2,and Hap3)of OsPHB2,among which Hap2 was associated with a greater number of effective panicles and higher yield,indicating its potential value for breeding applications.Collectively,our findings demonstrate that OsPHB2 plays an important role in regulating growth,development,and salt stress responses in rice.展开更多
To elucidate the variations in volatile organic compounds(VOCs)among widely cultivated japonica rice varieties in China and offer novel perspectives on flavor formation during rice-based beer brewing,nine prevalent Ch...To elucidate the variations in volatile organic compounds(VOCs)among widely cultivated japonica rice varieties in China and offer novel perspectives on flavor formation during rice-based beer brewing,nine prevalent Chinese japonica rice variaties were selected as experimental materials.Comprehensive analyses were conducted to investigate three key aspects:differences in VOCs among the selected japonica rice varieties,the retention of rice VOCs after beer brewing,and the influence of rice additives on beer sensory characteristics.Results showed that the total contents of VOCs in Wuyoudao 4(WYD4)and Nangeng 9108(NG9108)were significantly higher than those in the other varieties(P<0.05).The popcorn-flavor compound 2-acetyl-1-pyrroline(2-AP)was detected in Suigeng 27(SG27,26.80 ng/g),WYD4(25.25 ng/g),NG9108(21.18 ng/g),and Suigeng 18(SG18,11.62 ng/g),with the levels in the first three varieties significantly higher than those in SG18.Circular heatmap analysis classified the nine japonica varieties into three major categories:fragrant japonica from North China(WYD4),fragrant japonica from South China(NG9108),and others.Ten characteristic VOCs across the japonica varieties were identified by headspace solid-phase microextraction gas chromatography-mass spectrometry(HS-SPME-GC-MS).Using beer brewed with whole wheat as the control,we analyzed the VOCs and sensory characteristics of beer brewed with fragrant japonica rice as an additive.We found that rice VOCs were not detected in beer brewed with fragrant japonica rice as an additive.Adding rice promoted the formation of banana-like flavors and reduced the beer’s richness and mellowness.展开更多
Investigating the biological processes of iron(Fe)homeostasis is crucial for comprehending crop genetic improvement,which in turn helps address human malnutrition.This study utilized phenotyping,ionomics,and transcrip...Investigating the biological processes of iron(Fe)homeostasis is crucial for comprehending crop genetic improvement,which in turn helps address human malnutrition.This study utilized phenotyping,ionomics,and transcriptome analysis to uncover the regulatory mechanism of Fe homeostasis in rice under different Fe concentrations and during Fe supplementation.Our results showed both Fe deficiency and excess impede rice growth,with Fe excess exerting a more severe impact,particularly on the roots.The decrease in crown roots under excessive Fe conditions likely serves as an adaptive mechanism to counteract Fe toxicity.Transcriptomic analysis identified 4652 differentially expressed genes affected by Fe stress and supplementation.When Fe is supplemented to Fe-deficient rice,there are upregulations in the expression of genes related to Fe ion concentration and Fe homeostasis at 10 min and 2 h after supplementation,respectively,along with a brief downregulation at 30 min.This indicated a protective mechanism in the roots during Fe uptake.Notably,shoots with a lack of Fe accumulation did not show re-entry of Fe after supplementation,and there was a sustained downregulation of Fe-regulated genes.This suggests that the signaling from roots to shoots influences the response of shoots to Fe supplementation in rice.The molecular changes in Fe homeostasis discovered in this study can contribute to the improvement of rice.展开更多
Flooding stress is a major adverse condition during the emergence period of direct-seeded rice.This study investigated the use of wood vinegar as a seed soaking treatment to enhance rice seedling rates under flooding ...Flooding stress is a major adverse condition during the emergence period of direct-seeded rice.This study investigated the use of wood vinegar as a seed soaking treatment to enhance rice seedling rates under flooding stress,exploring both the methodology and physiological mechanisms involved.The optimal seed soaking concentration was determined through a gradient experiment,followed by a multi-cultivar validation test.The physiological mechanism of wood vinegar soaking on seedling emergence was analyzed by measuring the electrical conductivity of the flooding water,the changes in starch and soluble sugar contents in the grains and sprouts,and the dynamics ofα-amylase activity and antioxidant-related enzyme activities in the sprouts.The results showed that soaking rice seeds in a wood vinegar solution at a low concentration significantly enhanced the emergence of rice seedlings under flooding conditions,with a 100-fold dilution having the most pronounced effect,increasing seedling rates by 50.6%-60.0%.Further analysis indicated that wood vinegar treatment enhanced seedling establishment by inducing a significant increase inα-amylase activity,leading to a 74.9%-213.6%increase in soluble sugar content in the sprouts during 2-8 d after flooding stress compared with the control.Additionally,the treatment increased superoxide dismutase and peroxidase activities in the sprouts,mitigating lipid peroxidation of the cell membranes,and notably lower water electrical conductivity was observed in wood vinegar-treated seeds compared with the control.In conclusion,soaking rice seeds in a 100-fold diluted wood vinegar solution improves rice seedling rates under flooding stress by mitigating oxidative damage and maintaining energy supply.This approach is valuable for developing cost-effective seed treatment technologies and offering novel strategies to improve seedling rates and uniformity of direct-seeded rice under flooding conditions.展开更多
Nutritional imbalance has led to many chronic diseases and severely affected people’s quality of life.Developing nutrient-dense crops has emerged as a strategy for improving the current state of human nutritional int...Nutritional imbalance has led to many chronic diseases and severely affected people’s quality of life.Developing nutrient-dense crops has emerged as a strategy for improving the current state of human nutritional intake globally.We summarized recent advances in rice biotechnology breeding focusing on increasing micronutrients and active natural products,highlighting the cutting-edge metabolic engineering technologies and strategies employed.We discussed common challenges and potential solutions in metabolic engineering breeding.On this basis,the future development direction of rice nutrient metabolism industrialization was prospected.展开更多
Leaf thickness in rice critically influences photosynthetic efficiency and yield,yet its genetic basis remains poorly understood,with few functional genes previously characterized.In this study,we employ a pangenome-w...Leaf thickness in rice critically influences photosynthetic efficiency and yield,yet its genetic basis remains poorly understood,with few functional genes previously characterized.In this study,we employ a pangenome-wide association study(Pan-GWAS)on 302 diverse rice accessions from southern China,identifying 49 quantitative trait loci(QTLs)associated with leaf thickness.The most significant locus,qLT9,is fine-mapped to a 79-kb region on chromosome 9.Transcriptomic and genomic sequence analyses identify LOC_Os09g33480,which encodes a protein belonging to Multiple Organellar RNA Editing Factor family,as the key candidate gene.Overexpression and complementation transgenic experiments confirm LOC_Os09g33480(OsLT9)as the functional gene underlying qLT9,demonstrating a 24-bp Indel in its promoter correlates with the expression levels and leaf thickness.Notably,OsLT9 overexpression lines show not only thicker leaf,but also significantly enhanced photosynthetic efficiency and grain yield,establishing a link between leaf thickness modulation and yield enhancement.Population genomic analyses indicate strong selection for OsLT9 during domestication and breeding,with modern cultivars favoring thick leaf haplotype of OsLT9.This study establishes OsLT9 as a key regulator controlling leaf thickness in rice,and provides a valuable genetic resource for molecular breeding of high-yielding rice through optimization of plant architecture.展开更多
Chilo suppressalis(Walker)is one of the most important rice pests worldwide,posing a significant challenge to effective control.To develop a precision-timed,eco-friendly management strategy,overwintering population in...Chilo suppressalis(Walker)is one of the most important rice pests worldwide,posing a significant challenge to effective control.To develop a precision-timed,eco-friendly management strategy,overwintering population investigation and dynamic monitoring of C.suppressalis populations were conducted in the Meishan region of Sichuan,China,from 2023 to 2024.The optimal timing for insecticide application was estimated,followed by field trials evaluating the efficacy of different insecticides.Results demonstrated that the peak emergence of first-generation adults typically occurred in early July(under the environmental conditions of the Meishan region),with the ambient humidity below 75%and temperature around 29◦C.Pesticide efficacy trials show that insecticide combinations exhibited superior control.Notably,a combined treatment of emamectin benzoate⋅methoxyfenozide+chlorantraniliprole achieved the highest control efficacy(90.05%)and a corresponding yield of 12,491.55 kg/ha.All tested treatments were determined to be safe for rice growth.Furthermore,this optimized strategy resulted in notable economic benefits,including a 50%reduction in pesticide usage and cost savings of 4796.15 CNY compared to conventional practices.This study provides valuable insights into sustainable rice production and pest management and,for the first time,proposes a precision application time window based on intelligent monitoring.展开更多
Rice production is increasingly challenged by flooding stress because of global warming and rising sea levels.As the world’s most important staple crop,rice is highly vulnerable to anaerobic and submergence condition...Rice production is increasingly challenged by flooding stress because of global warming and rising sea levels.As the world’s most important staple crop,rice is highly vulnerable to anaerobic and submergence conditions that occur during flooding,particularly at the germination and vegetative stages.Anaerobic environments hinder seedling establishment during germination,while prolonged submergence during the vegetative stage impairs growth,ultimately reducing yield and grain quality.These stresses,driven by extended inundation,trigger a cascade of detrimental physiological responses and represent a major barrier to stable rice production and global food security.In this review,we examine the effects of flooding on rice growth at both the germination and vegetative stages.We further summarize recent advances in the identification of flooding-tolerant germplasm,QTL mapping,genome-wide association study,transcriptomic and proteomic analyses,and other molecular studies.Subsequently,we highlight potential cultivation and regulatory strategies,including genetic,morphological,physiological,and endogenous hormone-related approaches,aimed at enhancing tolerance to anaerobic and submergence stress.Together,these approaches underscore the promise of integrating molecular insights with agronomic practices to mitigate flooding damage and support sustainable rice production.展开更多
CR Dhan 310(CRD310),a biofortified rice variety,contains a significantly higher level of grain protein compared with its recurrent parent Naveen(NV),as well as most adapted high-yielding rice varieties in India.Althou...CR Dhan 310(CRD310),a biofortified rice variety,contains a significantly higher level of grain protein compared with its recurrent parent Naveen(NV),as well as most adapted high-yielding rice varieties in India.Although a limited investigation depicted that CRD310 contained higher levels of glutelin and some essential amino acids,detailed biochemical,molecular,and cellular mechanisms remain to be studied.As one of the means to identify the proteins and understand the underlying mechanism of higher proteins accumulation in grains of CRD310,the comparative proteomics was undertaken on grains of CRD310 and NV at the yellow ripening stage.展开更多
The NRAMP(natural resistance-associated macrophage protein)family plays a pivotal role in metal ion transport,regulating both essential micronutrient uptake and toxic heavy metal accumulation in plants.In rice(Oryza s...The NRAMP(natural resistance-associated macrophage protein)family plays a pivotal role in metal ion transport,regulating both essential micronutrient uptake and toxic heavy metal accumulation in plants.In rice(Oryza sativa),OsNRAMP transporters critically influence metal homeostasis,stress adaptation,and grain safety.Among them,OsNRAMP5 serves as a major entry point for cadmium(Cd)and manganese(Mn)uptake,making it a prime target for low-Cd rice breeding.However,knockout of OsNRAMP5 leads to severe Mn deficiency,highlighting the need for precise genetic modifications(e.g.,OsNRAMP5-Q337K),which reduce Cd accumulation while maintaining Mn nutrition.Additionally,OsNRAMP1 and OsNRAMP2 contribute to Cd translocation and plant immunity,whereas OsNRAMP3/4/6/7 participate in Mn,iron,and zinc distribution and stress responses.This review systematically summarizes the structural,functional,and regulatory mechanisms of OsNRAMPs,emphasizing their roles in metal transport,pathogen resistance,and abiotic stress adaptation.Furthermore,we discuss strategies for developing low-Cd rice varieties,including QTL-based breeding,CRISPR/Cas9-mediated gene editing,and multi-gene stacking approaches.Finally,we outline future research directions,such as structural engineering of metal-binding sites and field validation of engineered rice lines,to ensure sustainable rice production in heavy metal-contaminated soils.展开更多
Highlights OsCAX2 is localized to tonoplast,and cadmium induces its expression.OsCAX2 overexpression reduces cadmium concentration in indica rice grains by 49.1%.Cadmium(Cd)exposure poses significant health risks to h...Highlights OsCAX2 is localized to tonoplast,and cadmium induces its expression.OsCAX2 overexpression reduces cadmium concentration in indica rice grains by 49.1%.Cadmium(Cd)exposure poses significant health risks to humans,and the International Agency for Research on Cancer has classified it as a Group I carcinogen.Cadmium undergoes minimal metabolism in the human body;consequently,prolonged Cd^(2+)exposure can cause severe damage to multiple organs including the liver,kidneys,lungs,bones,and immune system(Shao et al.2024).Rice,one of the three global staple crops,and Cd exposure in humans primarily occurs the consumption of contaminated rice grains.The contribution of rice to the total dietary Cd intake is over 50% for non-smoking Asian populations(Chen et al.2018;Shi et al.2020).展开更多
Global warming has caused frequent occurrence of heat stress at the flowering stage of single-season rice in the Yangtze River region of China, which results in declines of spikelet fertility and yield in rice. Rice f...Global warming has caused frequent occurrence of heat stress at the flowering stage of single-season rice in the Yangtze River region of China, which results in declines of spikelet fertility and yield in rice. Rice flowering stage is the most sensitive period to high temperatures, and therefore, the key for heat stress happening is the flowering stage coinciding with high temperature, which causes spikelet fertility decreasing in heat-sensitive varieties, and is the major factor for heat injury differences among various rice planting regions. With the development of rice breeding, temperature indexes for heat stress has been converted from daily maximum temperature of 35 oC to 38 oC with the stress duration of more than 3 d. During the flowering stage, anther dehiscence inhibition and low pollen shedding onto the stigma are two main reasons for spikelet fertility reduction under high temperatures. At panicle initiation stage, high temperatures aggravate spikelet degeneration, and destroy floral organ development. Various types of rice varieties coexist in production, and indica-japonica hybrid rice demonstrates the highest heat resistance in general, followed by indica and japonica rice varieties. In production, avoiding high temperature is the main strategy of preventing heat stress, and planting suitable cultivars and adjustment of sowing date are the most effective measures. Irrigation is an effective real-time cultivation measure to decline the canopy temperature during the rice flowering stage. We suggested that further study should be focused on exploring heat injury differences among different rice variety types, and innovating rice-planting methods according to planting system changes in rice planting regions with extreme heat stress. Meanwhile, high temperature monitor and warning systems should be improved to achieve optimal heat stress management efficiencies.展开更多
The main problems about research and application of two-line hybrid rice were reviewed, including the confusing nomenclature and male sterile lines classification, the unclear characteristics of photoperiod and temper...The main problems about research and application of two-line hybrid rice were reviewed, including the confusing nomenclature and male sterile lines classification, the unclear characteristics of photoperiod and temperature responses and the unsuitable site selection for male sterile line and hybrid dce seed production. In order to efficiently and accurately use dual-purpose genic male sterile lines, four types, including PTGMS （photo-thermo-sensitive genic male sterile rice）, TGMS （thermo-sensitive genic male sterile rice）, reverse PTGMS and reverse TGMS, were proposed. A new idea for explaining the mechanism of sterility in dual-purpose hybrid rice was proposed. The transition from sterile to fertile was involved in the cooperative regulation of major-effect sterile genes and photoperiod and/or temperature sensitive ones. The minor-effect genes with accumulative effect on sterility were important factors that affected the critical temperature of sterility transfer. In order to make better use of dual-purpose lines, the characterization of responses to photoperiod and temperature of PTGMS should be made and the identification method for the characterization of photoperiod and temperature responses of PTGMS should also be put forward. The optimal ecological site for seed production could be determined according to the historical climate data and the requirements for the meteorological conditions during the different periods of seed production.展开更多
The Asian cultivated rice Oryza sativa can be classified into two major subspecies:japonica/geng and indica/xian.There are large physiological and phenotypic differences between the two subspecies,with each having its...The Asian cultivated rice Oryza sativa can be classified into two major subspecies:japonica/geng and indica/xian.There are large physiological and phenotypic differences between the two subspecies,with each having its advantages and disadvantages.Understanding the differences between xian and geng could provide a foundation for cultivar improvement based on hybridization between subspecies in order to synthesize favorable traits.We review the origin and domestication of xian and geng rice,compare their differences in terms of physiological and phenotypical traits,and describe the molecular mechanism differences between the subspecies.Based on this knowledge,we propose an ideal plant architecture of geng rice varieties for northern regions.展开更多
The breeding history and commercial exploitation of japonica hybrid rice in Anhu decades were reviewed. Besides, the bottleneck problems restricting the development of summarized, and corresponding technological count...The breeding history and commercial exploitation of japonica hybrid rice in Anhu decades were reviewed. Besides, the bottleneck problems restricting the development of summarized, and corresponding technological countermeasures were proposed. Province, China over the last three japonica hybrid rice in China were展开更多
Great achievements have been made in the exploration of male sterile resources, gene mapping and cloning and molecular mechanism revealing, as well as in breeding and application of two-line rice in China. This paper ...Great achievements have been made in the exploration of male sterile resources, gene mapping and cloning and molecular mechanism revealing, as well as in breeding and application of two-line rice in China. This paper briefly reviewed the discovery, types and cloning of sterile genes in rice and molecular breeding of two-line rice, and summarized the research progress of critical sterility inducing temperature, so as to provide new ideas for the research and breeding of two-line hybrid rice.展开更多
Rice is the main grain crop in China. With global warming, drought and water shortage have become one of the important factors limiting rice production. Improving the drought resistance of rice can effectively allevia...Rice is the main grain crop in China. With global warming, drought and water shortage have become one of the important factors limiting rice production. Improving the drought resistance of rice can effectively alleviate the loss of rice yield caused by drought. In this paper, the research progress on rice drought resistance and its evaluation methods, mapping of QTLs for drought resistance-related traits, and mining for drought resistance genes were reviewed, and molecular breeding for drought resistance in rice was prospected.展开更多
Rice seedling blight,caused by various fungi,including Fusarium oxysporum,poses a severe threat to rice production.As awareness grows regarding the environmental and safety hazards associated with the application of f...Rice seedling blight,caused by various fungi,including Fusarium oxysporum,poses a severe threat to rice production.As awareness grows regarding the environmental and safety hazards associated with the application of fungicides for managing rice seedling blight,there has been a shift in focus towards biological control agents.In this study,we isolated biocontrol bacteria from paddy fields that significantly inhibited the growth of F.oxysporum in vitro and identified the strains as Bacillus amyloliquefaciens T40 and Bacillus pumilus T208.Additionally,our findings indicated that the combined application of these Bacillus strains in soil was more effective in reducing the incidence of rice seedling blight than their individual use.Analysis of 16S and internal transcribed spacer rRNA gene sequencing data revealed that the mixture of the T40 and T208 strains exhibited the lowest average clustering coefficients,which were negatively correlated with the biomass of F.oxysporum-inoculated rice seedlings.Furthermore,this mixture led to higher stochastic assembly(average|βNTI|<2)and reduced selection pressures on rice rhizosphere bacteria compared with individual strain applications.The mixture of the T40 and T208 strains also significantly increased the expression of defense-related genes.In conclusion,the mixture of the T40 and T208 strains effectively modulates microbial community structures,enhances microbial network stability,and boosts the resistance against rice seedling blight.Our study supports the development and utilization of biological resources for crop protection.展开更多
Rice is a poor source of folate,an essential micronutrient for the body.Biofortification offers an effective way to enhance the folate content of rice and alleviate folate deficiencies in humans.In this study,we confi...Rice is a poor source of folate,an essential micronutrient for the body.Biofortification offers an effective way to enhance the folate content of rice and alleviate folate deficiencies in humans.In this study,we confirmed that OsADCS and OsGTPCHI,encoding the initial enzymes necessary for folate synthesis,positively regulate folate accumulation in knockout mutants of both japonica and indica rice backgrounds.The folate content in the low-folate japonica variety was slightly increased by the expression of the indica alleles driven by the endosperm-specific promoter.We further obtained co-expression lines by stacking OsADCS and OsGTPCHI genes;the folate accumulation in brown rice and polished rice reached 5.65μg/g and 2.95μg/g,respectively,representing 37.9-fold and 26.5-fold increases compared with the wild type.Transcriptomic analysis of rice grains from six transgenic lines showed that folate changes affected biological pathways involved in the synthesis and metabolism of rice seed storage substances,while the expression of other folate synthesis genes was weakly regulated.In addition,we identified Aus rice as a high-folate germplasm carrying superior haplotypes of OsADCS and OsGTPCHI through natural variation.This study provides an alternative and effective complementary strategy for rice biofortification,promoting the rational combination of metabolic engineering and conventional breeding to breed high-folate varieties.展开更多
基金supported by the National Key Research and Development Program of China(2020YFA0907600)the Biological Breeding-National Science and Technology Major Project(2024ZD04080)+1 种基金the National Natural Science Foundation of China(32270252)the Natural Science Foundation of Guangdong Province(2024A1515011085).
文摘Photorespiration consumes photosynthetically fixed carbon and reduces yields by 20%–50%in C3 crops.In an attempt to increase photosynthetic efficiency in rice by bypassing the carbon-consuming process of photorespiration,a photorespiratory bypass consisting of Chlamydomonas reinhardtii glycolate dehydrogenase and Cucurbita maxima malate synthase(termed the GMS bypass)was introduced into the rice cultivar Zhonghua 11 and osplgg1b,a mutant of the rice chloroplast glycolate transporter,to generate GMS/ZH11 and GMS/osplgg1b transgenic plants.The GMS bypass reduced photorespiration and increased photosynthesis in the transgenic plants.The straw biomass of GMS/ZH11 and GMS/osplgg1b increased by up to 16.0%and 85.7%,respectively.The yield of GMS/ZH11 increased by 22.0%–34.7%in paddy fields.Thus,the GMS bypass can increase photosynthetic efficiency and yield in rice.
基金supported by the Zhejiang Provincial Natural Science Outstanding Youth Fund Continuation Project,China(Grant No.LRG25C130002)the Innovation Program of the Chinese Academy of Agricultural Sciences(Grant No.CAAS-CSCB-202402)+3 种基金the Zhejiang Provincial Natural Science Foundation,China(Grant No.LD24C130001)the Biological Breeding-National Science and Technology Major Projects of China(Grant No.2023ZD04066)the Central Public-Interest Scientific Institution Basal Research Fund,China(Grant No.Y2025YC96)the Agricultural Science and Technology Innovation Program,China(Grant No.CAAS-ASTIP-2021-CNRRI).
文摘Prohibitin(PHB)plays critical roles in plant growth and development.In this study,we utilized CRISPR/Cas9 gene-editing technology to generate homozygous OsPHB2 knockout transgenic plants,designated cr-osphb2.The cr-osphb2 line exhibited wider leaves,dwarfism,and shorter panicles.Subcellular localization results indicated that OsPHB2 localizes to mitochondria.Under salt stress conditions,cr-osphb2 exhibited enhanced tolerance.Haplotype(Hap)analysis identified three major Haps(Hap1,Hap2,and Hap3)of OsPHB2,among which Hap2 was associated with a greater number of effective panicles and higher yield,indicating its potential value for breeding applications.Collectively,our findings demonstrate that OsPHB2 plays an important role in regulating growth,development,and salt stress responses in rice.
基金supported by the Natural Science Foundation of Zhejiang Province,China(Grant No.LTGN24C020004)the Enterprise Cooperation Project,China(Grant No.HRJYH-202330)+1 种基金the Zhejiang Province Pioneer and Bellwethers Research&Development Project of Science and Technology,China(Grant No.2023C02014)the Central Public-Interest Scientific Institution Basal Research Fund,China(Grant No.CPSIBRFCNRRI-202303).
文摘To elucidate the variations in volatile organic compounds(VOCs)among widely cultivated japonica rice varieties in China and offer novel perspectives on flavor formation during rice-based beer brewing,nine prevalent Chinese japonica rice variaties were selected as experimental materials.Comprehensive analyses were conducted to investigate three key aspects:differences in VOCs among the selected japonica rice varieties,the retention of rice VOCs after beer brewing,and the influence of rice additives on beer sensory characteristics.Results showed that the total contents of VOCs in Wuyoudao 4(WYD4)and Nangeng 9108(NG9108)were significantly higher than those in the other varieties(P<0.05).The popcorn-flavor compound 2-acetyl-1-pyrroline(2-AP)was detected in Suigeng 27(SG27,26.80 ng/g),WYD4(25.25 ng/g),NG9108(21.18 ng/g),and Suigeng 18(SG18,11.62 ng/g),with the levels in the first three varieties significantly higher than those in SG18.Circular heatmap analysis classified the nine japonica varieties into three major categories:fragrant japonica from North China(WYD4),fragrant japonica from South China(NG9108),and others.Ten characteristic VOCs across the japonica varieties were identified by headspace solid-phase microextraction gas chromatography-mass spectrometry(HS-SPME-GC-MS).Using beer brewed with whole wheat as the control,we analyzed the VOCs and sensory characteristics of beer brewed with fragrant japonica rice as an additive.We found that rice VOCs were not detected in beer brewed with fragrant japonica rice as an additive.Adding rice promoted the formation of banana-like flavors and reduced the beer’s richness and mellowness.
基金supported by the National Key Research and Development Program,China(Grant No.2023YFD2301900)the Natural Science Foundation of Sichuan Province,China(Grant No.23NSFSC0055).
文摘Investigating the biological processes of iron(Fe)homeostasis is crucial for comprehending crop genetic improvement,which in turn helps address human malnutrition.This study utilized phenotyping,ionomics,and transcriptome analysis to uncover the regulatory mechanism of Fe homeostasis in rice under different Fe concentrations and during Fe supplementation.Our results showed both Fe deficiency and excess impede rice growth,with Fe excess exerting a more severe impact,particularly on the roots.The decrease in crown roots under excessive Fe conditions likely serves as an adaptive mechanism to counteract Fe toxicity.Transcriptomic analysis identified 4652 differentially expressed genes affected by Fe stress and supplementation.When Fe is supplemented to Fe-deficient rice,there are upregulations in the expression of genes related to Fe ion concentration and Fe homeostasis at 10 min and 2 h after supplementation,respectively,along with a brief downregulation at 30 min.This indicated a protective mechanism in the roots during Fe uptake.Notably,shoots with a lack of Fe accumulation did not show re-entry of Fe after supplementation,and there was a sustained downregulation of Fe-regulated genes.This suggests that the signaling from roots to shoots influences the response of shoots to Fe supplementation in rice.The molecular changes in Fe homeostasis discovered in this study can contribute to the improvement of rice.
基金supported by the National Key Research and Development Program of China(Grant No.2023YFD2301300)the National Rice Industry Technology System,China(Grant No.CARS-01).
文摘Flooding stress is a major adverse condition during the emergence period of direct-seeded rice.This study investigated the use of wood vinegar as a seed soaking treatment to enhance rice seedling rates under flooding stress,exploring both the methodology and physiological mechanisms involved.The optimal seed soaking concentration was determined through a gradient experiment,followed by a multi-cultivar validation test.The physiological mechanism of wood vinegar soaking on seedling emergence was analyzed by measuring the electrical conductivity of the flooding water,the changes in starch and soluble sugar contents in the grains and sprouts,and the dynamics ofα-amylase activity and antioxidant-related enzyme activities in the sprouts.The results showed that soaking rice seeds in a wood vinegar solution at a low concentration significantly enhanced the emergence of rice seedlings under flooding conditions,with a 100-fold dilution having the most pronounced effect,increasing seedling rates by 50.6%-60.0%.Further analysis indicated that wood vinegar treatment enhanced seedling establishment by inducing a significant increase inα-amylase activity,leading to a 74.9%-213.6%increase in soluble sugar content in the sprouts during 2-8 d after flooding stress compared with the control.Additionally,the treatment increased superoxide dismutase and peroxidase activities in the sprouts,mitigating lipid peroxidation of the cell membranes,and notably lower water electrical conductivity was observed in wood vinegar-treated seeds compared with the control.In conclusion,soaking rice seeds in a 100-fold diluted wood vinegar solution improves rice seedling rates under flooding stress by mitigating oxidative damage and maintaining energy supply.This approach is valuable for developing cost-effective seed treatment technologies and offering novel strategies to improve seedling rates and uniformity of direct-seeded rice under flooding conditions.
基金supported by the National Key Research and Development Program of China(2024YFF1000600)the National Natural Science Foundation of China(32241040).
文摘Nutritional imbalance has led to many chronic diseases and severely affected people’s quality of life.Developing nutrient-dense crops has emerged as a strategy for improving the current state of human nutritional intake globally.We summarized recent advances in rice biotechnology breeding focusing on increasing micronutrients and active natural products,highlighting the cutting-edge metabolic engineering technologies and strategies employed.We discussed common challenges and potential solutions in metabolic engineering breeding.On this basis,the future development direction of rice nutrient metabolism industrialization was prospected.
基金supported by the National Natural Science Foundation of China(32301845)GuangDong Basic and Applied Basic Research Foundation(2022A1515012339)+3 种基金the National Key R&D Program of China(2024YFD1200801)Seed industry revitalization project of special fund for rural revitalization strategy in Guangdong Province(2024-NPY-00-001)Modern Seed Industry Innovation Capacity Enhancement Progject of Guangdong Academy of Agricultural Sciences,Elite Rice Plan of GDRRI(2023YG01)Guangdong Key Laboratory of Rice Science and Technology(2023B1212060042).
文摘Leaf thickness in rice critically influences photosynthetic efficiency and yield,yet its genetic basis remains poorly understood,with few functional genes previously characterized.In this study,we employ a pangenome-wide association study(Pan-GWAS)on 302 diverse rice accessions from southern China,identifying 49 quantitative trait loci(QTLs)associated with leaf thickness.The most significant locus,qLT9,is fine-mapped to a 79-kb region on chromosome 9.Transcriptomic and genomic sequence analyses identify LOC_Os09g33480,which encodes a protein belonging to Multiple Organellar RNA Editing Factor family,as the key candidate gene.Overexpression and complementation transgenic experiments confirm LOC_Os09g33480(OsLT9)as the functional gene underlying qLT9,demonstrating a 24-bp Indel in its promoter correlates with the expression levels and leaf thickness.Notably,OsLT9 overexpression lines show not only thicker leaf,but also significantly enhanced photosynthetic efficiency and grain yield,establishing a link between leaf thickness modulation and yield enhancement.Population genomic analyses indicate strong selection for OsLT9 during domestication and breeding,with modern cultivars favoring thick leaf haplotype of OsLT9.This study establishes OsLT9 as a key regulator controlling leaf thickness in rice,and provides a valuable genetic resource for molecular breeding of high-yielding rice through optimization of plant architecture.
基金funded by the National Key R&D Project‘Innovation and Integration of Key Technologies for Integration of Agricultural Machinery and Agronomy in Weak Links of Hybrid Mid-season Rice in Hilly Areas of Southwest China’(2023YFD2301901).
文摘Chilo suppressalis(Walker)is one of the most important rice pests worldwide,posing a significant challenge to effective control.To develop a precision-timed,eco-friendly management strategy,overwintering population investigation and dynamic monitoring of C.suppressalis populations were conducted in the Meishan region of Sichuan,China,from 2023 to 2024.The optimal timing for insecticide application was estimated,followed by field trials evaluating the efficacy of different insecticides.Results demonstrated that the peak emergence of first-generation adults typically occurred in early July(under the environmental conditions of the Meishan region),with the ambient humidity below 75%and temperature around 29◦C.Pesticide efficacy trials show that insecticide combinations exhibited superior control.Notably,a combined treatment of emamectin benzoate⋅methoxyfenozide+chlorantraniliprole achieved the highest control efficacy(90.05%)and a corresponding yield of 12,491.55 kg/ha.All tested treatments were determined to be safe for rice growth.Furthermore,this optimized strategy resulted in notable economic benefits,including a 50%reduction in pesticide usage and cost savings of 4796.15 CNY compared to conventional practices.This study provides valuable insights into sustainable rice production and pest management and,for the first time,proposes a precision application time window based on intelligent monitoring.
基金supported by the National Natural Science Foundation of China(Grant Nos.32160501 and 32201901)the Accelerated Breeding Initiative of the Consultative Group on International Agricultural Research(Grant No.INIT-01)+2 种基金the Natural Science Foundation of Guangxi,China(Grant No.2021GXNSFAA220026)the Program on National Modern Agricultural Technology System Guangxi Innovation Team,China(Grant No.nycytxgxcxtd-2021-01-04)the Advantage Team Project of Guangxi Academy of Agricultural Sciences,China(Grant No.2026YT070).
文摘Rice production is increasingly challenged by flooding stress because of global warming and rising sea levels.As the world’s most important staple crop,rice is highly vulnerable to anaerobic and submergence conditions that occur during flooding,particularly at the germination and vegetative stages.Anaerobic environments hinder seedling establishment during germination,while prolonged submergence during the vegetative stage impairs growth,ultimately reducing yield and grain quality.These stresses,driven by extended inundation,trigger a cascade of detrimental physiological responses and represent a major barrier to stable rice production and global food security.In this review,we examine the effects of flooding on rice growth at both the germination and vegetative stages.We further summarize recent advances in the identification of flooding-tolerant germplasm,QTL mapping,genome-wide association study,transcriptomic and proteomic analyses,and other molecular studies.Subsequently,we highlight potential cultivation and regulatory strategies,including genetic,morphological,physiological,and endogenous hormone-related approaches,aimed at enhancing tolerance to anaerobic and submergence stress.Together,these approaches underscore the promise of integrating molecular insights with agronomic practices to mitigate flooding damage and support sustainable rice production.
基金supported by the director of Indian Council of Agricultural Research and International Rice Research Institute (ICAR-CRRI), Cuttack, Indiathe coordinator of the ICAR-sponsored project ‘C-reactive protein (CRP) in Biofortification in Selected Crops’, India
文摘CR Dhan 310(CRD310),a biofortified rice variety,contains a significantly higher level of grain protein compared with its recurrent parent Naveen(NV),as well as most adapted high-yielding rice varieties in India.Although a limited investigation depicted that CRD310 contained higher levels of glutelin and some essential amino acids,detailed biochemical,molecular,and cellular mechanisms remain to be studied.As one of the means to identify the proteins and understand the underlying mechanism of higher proteins accumulation in grains of CRD310,the comparative proteomics was undertaken on grains of CRD310 and NV at the yellow ripening stage.
基金supported by the National Key R&D Program,China(Grant No.2022YFD1201505)the Key Laboratory of Sichuan Province Open Project,China(Grant No.2023LYKF02)+1 种基金the Central Public-Interest Scientific Institution Basal Research Fund,China(Grant No.CPSIBRF-CNRRI-202306)the Sichuan Provincial Financial Independent Innovation Project,China(Grant No.2022ZZCX001).
文摘The NRAMP(natural resistance-associated macrophage protein)family plays a pivotal role in metal ion transport,regulating both essential micronutrient uptake and toxic heavy metal accumulation in plants.In rice(Oryza sativa),OsNRAMP transporters critically influence metal homeostasis,stress adaptation,and grain safety.Among them,OsNRAMP5 serves as a major entry point for cadmium(Cd)and manganese(Mn)uptake,making it a prime target for low-Cd rice breeding.However,knockout of OsNRAMP5 leads to severe Mn deficiency,highlighting the need for precise genetic modifications(e.g.,OsNRAMP5-Q337K),which reduce Cd accumulation while maintaining Mn nutrition.Additionally,OsNRAMP1 and OsNRAMP2 contribute to Cd translocation and plant immunity,whereas OsNRAMP3/4/6/7 participate in Mn,iron,and zinc distribution and stress responses.This review systematically summarizes the structural,functional,and regulatory mechanisms of OsNRAMPs,emphasizing their roles in metal transport,pathogen resistance,and abiotic stress adaptation.Furthermore,we discuss strategies for developing low-Cd rice varieties,including QTL-based breeding,CRISPR/Cas9-mediated gene editing,and multi-gene stacking approaches.Finally,we outline future research directions,such as structural engineering of metal-binding sites and field validation of engineered rice lines,to ensure sustainable rice production in heavy metal-contaminated soils.
基金financially supported by the National Key R&D Program of China(2024YFD1200800)the Guangdong Basic and Applied Basic Research Foundation,China(2024A1515030094)。
文摘Highlights OsCAX2 is localized to tonoplast,and cadmium induces its expression.OsCAX2 overexpression reduces cadmium concentration in indica rice grains by 49.1%.Cadmium(Cd)exposure poses significant health risks to humans,and the International Agency for Research on Cancer has classified it as a Group I carcinogen.Cadmium undergoes minimal metabolism in the human body;consequently,prolonged Cd^(2+)exposure can cause severe damage to multiple organs including the liver,kidneys,lungs,bones,and immune system(Shao et al.2024).Rice,one of the three global staple crops,and Cd exposure in humans primarily occurs the consumption of contaminated rice grains.The contribution of rice to the total dietary Cd intake is over 50% for non-smoking Asian populations(Chen et al.2018;Shi et al.2020).
基金financially supported by the National Key Research and Development Program of China(Grant No.2017YFD0300409)the National Natural Science Foundation of China(Grant No.31701374)+1 种基金the Special Fund for China Agricultural Research System(Grant Nos.CARS-01-22 and CARS-01-65)the Basic Research Foundation of National Commonweal Research Institute of China(Grant No.2017RG004-4)
文摘Global warming has caused frequent occurrence of heat stress at the flowering stage of single-season rice in the Yangtze River region of China, which results in declines of spikelet fertility and yield in rice. Rice flowering stage is the most sensitive period to high temperatures, and therefore, the key for heat stress happening is the flowering stage coinciding with high temperature, which causes spikelet fertility decreasing in heat-sensitive varieties, and is the major factor for heat injury differences among various rice planting regions. With the development of rice breeding, temperature indexes for heat stress has been converted from daily maximum temperature of 35 oC to 38 oC with the stress duration of more than 3 d. During the flowering stage, anther dehiscence inhibition and low pollen shedding onto the stigma are two main reasons for spikelet fertility reduction under high temperatures. At panicle initiation stage, high temperatures aggravate spikelet degeneration, and destroy floral organ development. Various types of rice varieties coexist in production, and indica-japonica hybrid rice demonstrates the highest heat resistance in general, followed by indica and japonica rice varieties. In production, avoiding high temperature is the main strategy of preventing heat stress, and planting suitable cultivars and adjustment of sowing date are the most effective measures. Irrigation is an effective real-time cultivation measure to decline the canopy temperature during the rice flowering stage. We suggested that further study should be focused on exploring heat injury differences among different rice variety types, and innovating rice-planting methods according to planting system changes in rice planting regions with extreme heat stress. Meanwhile, high temperature monitor and warning systems should be improved to achieve optimal heat stress management efficiencies.
基金supported by the National High Technology Research and Development Program of (Grant No.2010AA101304)the Transformation Fund for Agricultural Science and Technology Achievements (Grant No.2007GB2D200226)the Natural Science Foundation of Hunan Province,China(Grant No. 10JJ4012)
文摘The main problems about research and application of two-line hybrid rice were reviewed, including the confusing nomenclature and male sterile lines classification, the unclear characteristics of photoperiod and temperature responses and the unsuitable site selection for male sterile line and hybrid dce seed production. In order to efficiently and accurately use dual-purpose genic male sterile lines, four types, including PTGMS （photo-thermo-sensitive genic male sterile rice）, TGMS （thermo-sensitive genic male sterile rice）, reverse PTGMS and reverse TGMS, were proposed. A new idea for explaining the mechanism of sterility in dual-purpose hybrid rice was proposed. The transition from sterile to fertile was involved in the cooperative regulation of major-effect sterile genes and photoperiod and/or temperature sensitive ones. The minor-effect genes with accumulative effect on sterility were important factors that affected the critical temperature of sterility transfer. In order to make better use of dual-purpose lines, the characterization of responses to photoperiod and temperature of PTGMS should be made and the identification method for the characterization of photoperiod and temperature responses of PTGMS should also be put forward. The optimal ecological site for seed production could be determined according to the historical climate data and the requirements for the meteorological conditions during the different periods of seed production.
基金supported by the National Natural Science Foundation of China(32071982 and U1708231).
文摘The Asian cultivated rice Oryza sativa can be classified into two major subspecies:japonica/geng and indica/xian.There are large physiological and phenotypic differences between the two subspecies,with each having its advantages and disadvantages.Understanding the differences between xian and geng could provide a foundation for cultivar improvement based on hybridization between subspecies in order to synthesize favorable traits.We review the origin and domestication of xian and geng rice,compare their differences in terms of physiological and phenotypical traits,and describe the molecular mechanism differences between the subspecies.Based on this knowledge,we propose an ideal plant architecture of geng rice varieties for northern regions.
基金supported by National‘863’Program of China(2004AA211091,2002AA207001).
文摘The breeding history and commercial exploitation of japonica hybrid rice in Anhu decades were reviewed. Besides, the bottleneck problems restricting the development of summarized, and corresponding technological countermeasures were proposed. Province, China over the last three japonica hybrid rice in China were
基金Supported by Open Project of State Key Laboratory of Rice Biology(160103)Key Technologies R&D Program of Anhui Province(1804b06020344)
文摘Great achievements have been made in the exploration of male sterile resources, gene mapping and cloning and molecular mechanism revealing, as well as in breeding and application of two-line rice in China. This paper briefly reviewed the discovery, types and cloning of sterile genes in rice and molecular breeding of two-line rice, and summarized the research progress of critical sterility inducing temperature, so as to provide new ideas for the research and breeding of two-line hybrid rice.
基金Supported by Natural Science Foundation of Anhui Province (1908085MC93)Major Science and Technology Project of Anhui Province (2021d06050002)Anhui Province Joint Research on Improved Crop Varieties (Rice)。
文摘Rice is the main grain crop in China. With global warming, drought and water shortage have become one of the important factors limiting rice production. Improving the drought resistance of rice can effectively alleviate the loss of rice yield caused by drought. In this paper, the research progress on rice drought resistance and its evaluation methods, mapping of QTLs for drought resistance-related traits, and mining for drought resistance genes were reviewed, and molecular breeding for drought resistance in rice was prospected.
基金supported by the Zhejiang Provincial Natural Science Foundation,China(Grant No.LQ24C010007)Zhejiang Science and Technology Major Program on Rice New Variety Breeding,China(Grant No.2021C02063)+4 种基金the Agricultural Sciences and Technologies Innovation Program,China(Grant No.CAAS-CSCB-202301)the Key Projects of Zhejiang Provincial Natural Science Foundation,China(Grant No.LZ23C130002)the Youth Innovation Program of Chinese Academy of Agricultural Sciences(Grant No.Y2023QC22)the Joint Open Competitive Project of the Yazhou Bay Seed Laboratory and China National Seed Company Limited(Grant Nos.B23YQ1514 and B23CQ15EP)the External Cooperation Projects of Biotechnology Research Institute,Fujian Academy of Agricultural Sciences,China(Grant No.DWHZ2024-07).
文摘Rice seedling blight,caused by various fungi,including Fusarium oxysporum,poses a severe threat to rice production.As awareness grows regarding the environmental and safety hazards associated with the application of fungicides for managing rice seedling blight,there has been a shift in focus towards biological control agents.In this study,we isolated biocontrol bacteria from paddy fields that significantly inhibited the growth of F.oxysporum in vitro and identified the strains as Bacillus amyloliquefaciens T40 and Bacillus pumilus T208.Additionally,our findings indicated that the combined application of these Bacillus strains in soil was more effective in reducing the incidence of rice seedling blight than their individual use.Analysis of 16S and internal transcribed spacer rRNA gene sequencing data revealed that the mixture of the T40 and T208 strains exhibited the lowest average clustering coefficients,which were negatively correlated with the biomass of F.oxysporum-inoculated rice seedlings.Furthermore,this mixture led to higher stochastic assembly(average|βNTI|<2)and reduced selection pressures on rice rhizosphere bacteria compared with individual strain applications.The mixture of the T40 and T208 strains also significantly increased the expression of defense-related genes.In conclusion,the mixture of the T40 and T208 strains effectively modulates microbial community structures,enhances microbial network stability,and boosts the resistance against rice seedling blight.Our study supports the development and utilization of biological resources for crop protection.
基金supported by the Central Public-Interest Scientific Institution Basal Research Fund,China(Grant No.CPSIBRF-CNRRI-202403)。
文摘Rice is a poor source of folate,an essential micronutrient for the body.Biofortification offers an effective way to enhance the folate content of rice and alleviate folate deficiencies in humans.In this study,we confirmed that OsADCS and OsGTPCHI,encoding the initial enzymes necessary for folate synthesis,positively regulate folate accumulation in knockout mutants of both japonica and indica rice backgrounds.The folate content in the low-folate japonica variety was slightly increased by the expression of the indica alleles driven by the endosperm-specific promoter.We further obtained co-expression lines by stacking OsADCS and OsGTPCHI genes;the folate accumulation in brown rice and polished rice reached 5.65μg/g and 2.95μg/g,respectively,representing 37.9-fold and 26.5-fold increases compared with the wild type.Transcriptomic analysis of rice grains from six transgenic lines showed that folate changes affected biological pathways involved in the synthesis and metabolism of rice seed storage substances,while the expression of other folate synthesis genes was weakly regulated.In addition,we identified Aus rice as a high-folate germplasm carrying superior haplotypes of OsADCS and OsGTPCHI through natural variation.This study provides an alternative and effective complementary strategy for rice biofortification,promoting the rational combination of metabolic engineering and conventional breeding to breed high-folate varieties.
