期刊文献+
共找到10篇文章
< 1 >
每页显示 20 50 100
Impact of pH on Fuzzy Interactions between Two Intrinsically Disordered Proteins
1
作者 Yiping Yu Dan Wang Wenning Wang 《Chinese Journal of Chemical Physics》 2025年第4期503-512,I0086-I0088,I0106,共14页
Intrinsically disordered proteins(IDPs)and their regions(IDRs)play crucial roles in cellular func-tions despite their lack of stable three-dimensional structures.In this study,we investigate the interac-tions between ... Intrinsically disordered proteins(IDPs)and their regions(IDRs)play crucial roles in cellular func-tions despite their lack of stable three-dimensional structures.In this study,we investigate the interac-tions between the C-terminal do-main of protein 4.1G(4.1G CTD)and the nuclear mitotic apparatus protein(NuMA)under varying pH and salt ion conditions to under-stand the regulatory mechanisms affecting their binding.4.1G CTD and NuMA bind effec-tively under neutral and alkaline conditions,but their interaction is disrupted under acidic conditions(pH 3.6).The protonation of positively charged residues at the C-terminal of 4.1G CTD under acidic conditions leads to increased electrostatic repulsion,weakening the overall binding free energy.Secondary structure analysis shows that specific regions of 4.1G CTD re-main stable under both pH conditions,but the C-terminal region(aa 990−1000)and the N-terminal region of NuMA(aa 1800−1810)exhibit significant reductions in secondary struc-ture probability under acidic conditions.Contact map analysis and solvent-accessible surface area analysis further support these findings by showing a reduced contact probability be-tween these regions under pH 3.6.These results provide a comprehensive understanding of how pH and ionic strength regulate the binding dynamics of 4.1G CTD and NuMA,emphasiz-ing the regulatory role of electrostatic interactions. 展开更多
关键词 4.1G Protein Intrinsically disordered proteins Molecule dynamics simulation
在线阅读 下载PDF
Cryo-EM structure of a minimal reaction center-light-harvesting complex from the phototrophic bacterium Chloroflexus aurantiacus
2
作者 Guoqiang Huang Shishang Dong +6 位作者 Lin Ma Lin Li Jinxin Ju Mei-Jiao Wang Jian-Ping Zhang Sen-Fang Sui Xiaochun Qin 《Journal of Integrative Plant Biology》 2025年第4期967-978,共12页
Photosynthetic organisms have developed various light-harvesting antenna systems to capture light and transfer energy to reaction centers(RCs).Simultaneous utilization of the integral membrane light-harvesting antenna... Photosynthetic organisms have developed various light-harvesting antenna systems to capture light and transfer energy to reaction centers(RCs).Simultaneous utilization of the integral membrane light-harvesting antenna(LH complex)and the extrinsic antenna(chlorosomes)makes the phototrophic bacterium Chloroflexus(Cfx.)aurantiacus an ideal model for studying filamentous anoxygenic phototrophs(FAPs).Here,we determined the structure of a minimal RC-LH photocomplex from Cfx.aurantiacus J-10-fl(CaRC-LH)at 3.05-Åresolution.The CaRC-LH binds only to seven LH subunits,which form a crescent-shaped antenna surrounding the movable menaquinone-10(QB)binding site of CaRC.In this complex with minimal LH units,an extra antenna is required to ensure sufficient light-gathering,providing a clear explanation for the presence of chlorosomes in Cfx.aurantiacus.More importantly,the semicircle of the antenna represents a novel RC-LH assembly pattern.Our structure provides a basis for understanding the existence of chlorosomes in Cfx.aurantiacus and the possible assembly pattern of RC-LH. 展开更多
关键词 Chloroflexus aurantiacus CHLOROSOMES electron transfer PHOTOSYNTHESIS RC-LH
原文传递
Active-modulated fluorescence fluctuation super-resolution microscopy with multi-resolution analysis
3
作者 Zhijia Liu Duantao Hou +2 位作者 Yiyan Fei Lan Mi Jiong Ma 《Journal of Innovative Optical Health Sciences》 2025年第6期15-26,共12页
A new scheme of super-resolution optical fluctuation imaging(SOFI)is proposed to broaden its application in the high-order cumulant reconstruction by optimizing blinking characteristics,eliminating noise in raw data a... A new scheme of super-resolution optical fluctuation imaging(SOFI)is proposed to broaden its application in the high-order cumulant reconstruction by optimizing blinking characteristics,eliminating noise in raw data and applying multi-resolution analysis in cumulant reconstruction.A motor-driven rotating mask optical modulation system is designed to adjust the excitation lightfield and allows for fast deployment.Active-modulated fluorescence fluctuation superresolution microscopy with multi-resolution analysis(AMF-MRA-SOFI)demonstrates enhanced resolution ability and reconstruction quality in experiments performed on sample of conventional dyes,achieving a resolution of 100 nm in the fourth order compared to conventional SOFI reconstruction.Furthermore,our approach combining expansion super-resolution achieved a resolution at-57 nm. 展开更多
关键词 Super-resolution microscopy SOFI multi-resolution analysis spatial light modulation
原文传递
Label-free visualization of lignin deposition in loquats using complementary stimulated and spontaneous Raman microscopy 被引量:3
4
作者 Nan Zhu Yifan Yang +2 位作者 Minbiao Ji Di Wu Kunsong Chen 《Horticulture Research》 SCIE 2019年第1期875-887,共13页
The lignification triggered by biotic or abiotic stresses hardens fruits and vegetables and eventually influences their consumer appeal.Extensive prior efforts have been made to unveil the underlying mechanism of fles... The lignification triggered by biotic or abiotic stresses hardens fruits and vegetables and eventually influences their consumer appeal.Extensive prior efforts have been made to unveil the underlying mechanism of flesh lignification,primarily focused on its physicochemical and molecular biological properties.Nevertheless,most of these studies used destroyed and homogenized bulk tissues as analytes;as a result,potentially valuable spatial information was lost.In this study,the deposition of lignin in loquat flesh during lignification was visualized from the tissue level to the singlecell level by combining the advantages of stimulated Raman scattering(SRS)and spontaneous Raman microscopy using label-free in situ molecular imaging.SRS has the advantages of being fast and providing large-area chemical imaging to reveal the spatial heterogeneity of lignin and cell wall polysaccharide distribution in loquat flesh.After 2 days of storage at 0℃,increased lignins were observed by large-area SRS imaging.In addition,microscopic SRS images of the flesh cells indicated that the increased lignins were trapped in the cell corner(CC)and middle lamella(ML).Furthermore,the compositional and structural features of lignified cells(LCs),CC and ML of loquat flesh were investigated by spontaneous Raman microscopy,and the results showed that the LCs were a combination of lignin,cellulose,and hemicellulose,whereas CC and ML showed only deposited lignin and pectin without cross-linked cellulose and hemicellulose.This result further suggests that the lignins in the CC and ML regions of loquats were later synthesized alone during postharvest storage.This innovative combination of SRS and spontaneous Raman microscopy allows the label-free macroscale and fine chemical imaging of plant cell walls and will enhance our fundamental understanding of the structures and functions of the plant cell wall. 展开更多
关键词 PROPERTIES COMPLEMENTARY eventually
原文传递
Structural and dynamical mechanisms of a naturally occurring variant of the human prion protein in preventing prion conversion
5
作者 Yiming Tang Yifei Yao Guanghong Wei 《Chinese Physics B》 SCIE EI CAS CSCD 2020年第10期66-75,共10页
Prion diseases are associated with the misfolding of the normal helical cellular form of prion protein (PrPC) into the β-sheet-rich scrapie form (PrPSc) and the subsequent aggregation of PrPSc into amyloid fibrils. R... Prion diseases are associated with the misfolding of the normal helical cellular form of prion protein (PrPC) into the β-sheet-rich scrapie form (PrPSc) and the subsequent aggregation of PrPSc into amyloid fibrils. Recent studies demonstrated that a naturally occurring variant V127 of human PrPC is intrinsically resistant to prion conversion and aggregation, and can completely prevent prion diseases. However, the underlying molecular mechanism remains elusive. Herein we perform multiple microsecond molecular dynamics simulations on both wildtype (WT) and V127 variant of human PrPC to understand at atomic level the protective effect of V127 variant. Our simulations show that G127V mutation not only increases the rigidity of the S2–H2 loop between strand-2 (S2) and helix-2 (H2), but also allosterically enhances the stability of the H2 C-terminal region. Interestingly, previous studies reported that animals with rigid S2–H2 loop usually do not develop prion diseases, and the increase in H2 C-terminal stability can prevent misfolding and oligomerization of prion protein. The allosteric paths from G/V127 to H2 C-terminal region are identified using dynamical network analyses. Moreover, community network analyses illustrate that G127V mutation enhances the global correlations and intra-molecular interactions of PrP, thus stabilizing the overall PrPC structure and inhibiting its conversion into PrPSc. This study provides mechanistic understanding of human V127 variant in preventing prion conversion which may be helpful for the rational design of potent anti-prion compounds. 展开更多
关键词 prion protein V127 variant molecular dynamics simulations dynamic network analysis
原文传递
A digital microfluidic single-cell manipulation systemoptimized by extending-depth-of-field device
6
作者 Qiushu Chen Qi Meng +8 位作者 Yuzhe Liu Xiangan Long Yawei Kong Longfang Yao Liwen Chen Chuanyong Wu Kaiqin Chu Lan Mi Jiong Ma 《Journal of Innovative Optical Health Sciences》 SCIE EI CSCD 2023年第3期43-55,共13页
Microfuidic systems have been widely utilized in high-throughput biology analysis,but thedificulties in iquid manipulation and cell cultivation limit its application.This work has developed a new digital microfluidic(... Microfuidic systems have been widely utilized in high-throughput biology analysis,but thedificulties in iquid manipulation and cell cultivation limit its application.This work has developed a new digital microfluidic(DMF)system for on-demand droplet control.By adopting anextending-depth-of-field(EDoF)phase modulator to the optical system,the entire depth of themicrofluidic channel can be covered in one image without any refocusing process,ensuring that 95%of the particles in the droplet are captured within three shots together with shaking pro-cesses.With this system,suspension droplets are generated and droplets containing only oneyeast cll can be recognized,then each single cell is cultured in the array of the chip.Byobservingtheir growth in cell numbers and the green fluorescence protein(GFP)production via fluorescence imaging,the single cell with the highest production can be identified.The results haveproved the heterogeneity of yeast cells,and showed that the combined system can be applied forrapid single-cell sorting,cultivation,and analysis. 展开更多
关键词 Single-cell analysis digital microfluidic(DMF) extending-depth-of-field system
原文传递
Polymorphism of Kdo-Based Glycolipids:The Elaborately Determined Stable and Dynamic Bicelles
7
作者 Yingle Feng Long Li +6 位作者 Qiqige Du Lu Gou Lei Zhang Yonghai Chai Ran Zhang Tongfei Shi Guosong Chen 《CCS Chemistry》 CAS 2022年第7期2228-2238,共11页
Understanding how the diversity of glycolipids,including how their chemical structures and composition affect their biological functions,is a remarkable fundamental challenge.In this work,we employed a rare monosaccha... Understanding how the diversity of glycolipids,including how their chemical structures and composition affect their biological functions,is a remarkable fundamental challenge.In this work,we employed a rare monosaccharide,3-deoxy-Dmanno-2-octulosonic acid(Kdo)to build a simple and biomimetic model to understand the diversity of glycolipids from the viewpoint of supramolecular chemistry.Kdo was chosen not only because its unusual 8-carbon acidic carbohydrate backbone is very different from common hexoses,but also because of its key structural role in lipopolysaccharides and prevalence in bacteria,plant life,and algae.It was found that although both of the two Kdo-lipids S-Kdo and Kdo-S derived from the same carbohydrate backbone and gave bicelles as their self-assembled morphology,experimental results revealed that the self-assembly showed pathway complexity.Bicelle is the thermodynamic product of S-Kdo,while for Kdo-S,the bicelle is only a kinetically trapped state,which finally transforms to a ribbon.Molecular simulation clearly revealed the different packing of Kdo-lipids in the bicelles with different contribution from hydrogen bonds and electrostatic interactions. 展开更多
关键词 GLYCOLIPID KDO SELF-ASSEMBLY BICELLES
在线阅读 下载PDF
Molecular insights into AGS3’s role in spindle orientation:a biochemical perspective
8
作者 Shi Yu Jie Ji +2 位作者 Jingwei Weng Zhijun Liu Wenning Wang 《Journal of Molecular Cell Biology》 CSCD 2024年第11期15-29,共15页
The intrinsic regulation of spindle orientation during asymmetric cell division depends on the evolutionarily conserved protein complex LGN(Pins)/NuMA(Mud)/GαGDP.While the role of LGN and its Drosophila orthologue Pi... The intrinsic regulation of spindle orientation during asymmetric cell division depends on the evolutionarily conserved protein complex LGN(Pins)/NuMA(Mud)/GαGDP.While the role of LGN and its Drosophila orthologue Pins is well-established,the function of AGS3,the paralogue of LGN,in spindle orientation during cell division remains controversial.This study substantiates the contentious nature of AGS3’s function through systematic biochemical characterizations.The results confirm the high conservation of AGS3 in its functional structural domains,similar to LGN,and its comparable ability to bind to partners including NuMA,Insc,and Gαi3 GDP.However,in contrast to LGN,AGS3 and the microtubule-binding protein NuMA are unable to form stable hetero-hexamers or higher-order oligomeric complexes that are pivotal for effective regulation of spindle orientation.It was found that this notable difference between AGS3 and LGN stems from the N-terminal sequence preceding the conserved TPR motifs,which spans~20 residues.Furthermore,our findings substantiate the disruptive effect of Insc on the oligomeric AGS3/NuMA complex,while showing no impact on the oligomeric LGN/NuMA complex.Consequently,Insc emerges as an additional regulatory factor that distinguishes the functional roles of AGS3 and LGN,leading to the impairment of AGS3’s ability to actively reorient the mitotic spindle.These results elucidate the molecular basis underlying the observed functional disparity in spindle orientation between LGN and AGS3,providing valuable insights into the regulation of cell division at the molecular level. 展开更多
关键词 asymmetric cell division spindle orientation AGS3 LGN NUMA
原文传递
Engineering single-molecule fluorescence withasymmetric nano-antennas 被引量:4
9
作者 Wenqi Zhao Xiaochaoran Tian +8 位作者 Zhening Fang Shiyi Xiao Meng Qiu Qiong He Wei Feng Fuyou Li Yuanbo Zhang Lei Zhou Yan-Wen Tan 《Light(Science & Applications)》 SCIE EI CAS CSCD 2021年第5期858-866,共9页
As a powerful tool for studying molecular dynamics in bioscience,single-molecule fluorescence detection providesdynamical information buried in ensemble experiments.Fluorescence in the near-infrared(NIR)is particularl... As a powerful tool for studying molecular dynamics in bioscience,single-molecule fluorescence detection providesdynamical information buried in ensemble experiments.Fluorescence in the near-infrared(NIR)is particularly usefulbecause it offers higher signal-to-noise ratio and increased penetration depth in tissue compared with visiblefluorescence.The low quantum yield of most NIR fluorophores,however,makes the detection of single-moleculefluorescence difcult.Here,we use asymmetric plasmonic nano-antenna to enhance the fluorescence intensity ofAlEE1000,a typical NIR dye,by a factor up to 405.The asymmetric nano-antenna achieve such an enhancement mainlyby increasing the quantum yield(to~80%)rather than the local field,which degrades the molecules'photostability.Our coupled-mode-theory analysis reveals that the enhancements stem from resonance-matching between antennaand molecule and,more importantly,from optimizing the coupling between the near-and far-ield modes withdesigner asymmetric structures.Our work provides a universal scheme for engineering single-molecule fluorescence inthe near-infrared regime. 展开更多
关键词 stability. ASYMMETRIC QUANTUM
原文传递
AgInS_(2)/ZnS quantum dots for noninvasive cervical cancer screening with intracellular pH sensing using fluorescence lifetime imaging microscopy 被引量:1
10
作者 Wenhua Su Dan Yang +7 位作者 Yulan Wang Yawei Kong Wanlu Zhang Jing Wang Yiyan Fei Ruiqian Guo Jiong Ma Lan Mi 《Nano Research》 SCIE EI CSCD 2022年第6期5193-5204,共12页
Intracellular pH plays a critical role in biological functions,and abnormal pH values are related to various diseases.Here,we report on an intracellular pH sensor AgInS_(2)(AIS)/ZnS quantum dots(QDs)that show long flu... Intracellular pH plays a critical role in biological functions,and abnormal pH values are related to various diseases.Here,we report on an intracellular pH sensor AgInS_(2)(AIS)/ZnS quantum dots(QDs)that show long fluorescence lifetimes of hundreds of nanoseconds and low toxicity.Fluorescence lifetime imaging microscopy(FLIM)combined with AIS/ZnS QDs is used for the imaging of live cells in different pH buffers and different cell lines.The FLIM images of AIS/ZnS QDs in live cells demonstrate different intracellular pH values in different regions,such as in lysosomes or cytoplasm.This method can also distinguish cancer cells from normal cells,and the fluorescence lifetime difference of the AIS/ZnS QDs between the two types of cells is 100±7 ns.Most importantly,the exfoliated cervical cells from 20 patients are investigated using FLIM combined with AIS/ZnS QDs.The lifetime difference value between the normal and cervical cancer(CC)groups is 115±9 ns,and the difference between the normal and the precancerous lesion group is 64±9 ns.For the first time,the noninvasive method has been used for cervical cancer screening,and it has shown great improvement in sensitivity compared with a clinical conventional cytology examination. 展开更多
关键词 AIS/ZnS quantum dots fluorescence lifetime imaging microscopy intracellular pH sensing cervical cancer screening NONINVASIVE
原文传递
上一页 1 下一页 到第
使用帮助 返回顶部