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Epigenetics and immunology:Under-recognized aspects of suicidality
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作者 Katarina Kouter JulijaŠmon Alja VidetičPaska 《World Journal of Psychiatry》 2025年第9期16-38,共23页
Suicidality is a complex phenomenon influenced by genetic,environmental,and epigenetic factors.Current tools to estimate suicide risk are insufficient,and there is an increasing need for reliable biomarkers to complem... Suicidality is a complex phenomenon influenced by genetic,environmental,and epigenetic factors.Current tools to estimate suicide risk are insufficient,and there is an increasing need for reliable biomarkers to complement clinical approaches.Growing evidence suggests that immune system dysregulation contributes to the pathophysiology of psychiatric disorders and suicidal behavior.Epigenetic mechanisms,including DNA methylation,histone modifications,and non-coding RNAs,regulate gene expression and may act as a bridge between environmental stressors and(neuro)inflammatory responses.In this review,we examine the evidence of peripheral and central inflammation in suicide completers and individuals with suicidal behavior.Next,we review current knowledge from various studies on suicide-associated epigenetic alterations.Furthermore,we evaluate the mechanisms by which early life adversity and chronic stress contribute to suicide diathesis,focusing on their association with epigenetic modifications and inflammatory pathways.We also examine future prospects and limitations of immunology-related biomarkers and the possibilities of therapeutic interventions targeting the immune system and epigenetic regulation.While challenging,research on epigenetic and immune alterations in suicidality shows promise for identifying suicide risk subtypes and advancing personalized psychiatry. 展开更多
关键词 SUICIDE Suicidal behavior Inflammation DNA methylation Histone tail modification Non-coding RNA Multi-omics Adverse childhood experiences
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Mechanisms underlying key agronomic traits and implications for molecular breeding in soybean 被引量:5
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作者 Chao Fang Haiping Du +2 位作者 Lingshuang Wang Baohui Liu Fanjiang Kong 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2024年第4期379-393,共15页
Soybean(Glycine max[L.]Merr.)is an important crop that provides protein and vegetable oil for human consumption.As soybean is a photoperiod-sensitive crop,its cultivation and yield are limited by the photoperiodic con... Soybean(Glycine max[L.]Merr.)is an important crop that provides protein and vegetable oil for human consumption.As soybean is a photoperiod-sensitive crop,its cultivation and yield are limited by the photoperiodic conditions in the field.In contrast to other major crops,soybean has a special plant architecture and a special symbiotic nitrogen fixation system,representing two unique breeding directions.Thus,flowering time,plant architecture,and symbiotic nitrogen fixation are three critical or unique yielddetermining factors.This review summarizes the progress made in our understanding of these three critical yield-determining factors in soybean.Meanwhile,we propose potential research directions to increase soybean production,discuss the application of genomics and genomic-assisted breeding,and explore research directions to address future challenges,particularly those posed by global climate changes. 展开更多
关键词 SOYBEAN Grain yield Flowering time Plant architecture NODULATION Symbiotic nitrogen fixation Genome study
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Molecular insights into clinical trials for immune checkpoint inhibitors in colorectal cancer:Unravelling challenges and future directions 被引量:2
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作者 Samantha Sharma Naresh Singh +5 位作者 Anita Ahmed Turk Isabella Wan Akshay Guttikonda Julia Lily Dong Xinna Zhang Mateusz Opyrchal 《World Journal of Gastroenterology》 SCIE CAS 2024年第13期1815-1835,共21页
Colorectal cancer(CRC)is a complex disease with diverse etiologies and clinical outcomes.Despite considerable progress in development of CRC therapeutics,challenges remain regarding the diagnosis and management of adv... Colorectal cancer(CRC)is a complex disease with diverse etiologies and clinical outcomes.Despite considerable progress in development of CRC therapeutics,challenges remain regarding the diagnosis and management of advanced stage metastatic CRC(mCRC).In particular,the five-year survival rate is very low since mCRC is currently rarely curable.Over the past decade,cancer treatment has significantly improved with the introduction of cancer immunotherapies,specifically immune checkpoint inhibitors.Therapies aimed at blocking immune checkpoints such as PD-1,PD-L1,and CTLA-4 target inhibitory pathways of the immune system,and thereby enhance anti-tumor immunity.These therapies thus have shown promising results in many clinical trials alone or in combination.The efficacy and safety of immunotherapy,either alone or in combination with CRC,have been investigated in several clinical trials.Clinical trials,including KEYNOTE-164 and CheckMate 142,have led to Food and Drug Administration approval of the PD-1 inhibitors pembrolizumab and nivolumab,respectively,for the treatment of patients with unresectable or metastatic microsatellite instability-high or deficient mismatch repair CRC.Unfortunately,these drugs benefit only a small percentage of patients,with the benefits of immunotherapy remaining elusive for the vast majority of CRC patients.To this end,primary and secondary resistance to immunotherapy remains a significant issue,and further research is necessary to optimize the use of immunotherapy in CRC and identify biomarkers to predict the response.This review provides a comprehensive overview of the clinical trials involving immune checkpoint inhibitors in CRC.The underlying rationale,challenges faced,and potential future steps to improve the prognosis and enhance the likelihood of successful trials in this field are discussed. 展开更多
关键词 Colorectal cancer Immune checkpoint inhibitors Clinical trials Immunotherapy Microsatellite instability Microsatellite stability DNA mismatch repair
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Molecular Characterization of the Four Serotypes (DENV-1, DENV-2, DENV-3 and DENV-4) of Dengue Virus Circulating in Ouagadougou, Burkina Faso
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作者 Shoukrat Ohuwa Toyin Bello Aziz Sidi Aristide Tapsoba +9 位作者 Abdou Azaque Zoure Yidia Jean Romaric Bassole Wend-La-Sida Kévin Yogo Prosper Bado Olawoumi Fabrice Kouta Fadilatou Tassembedo Théodora Mahoukèdè Zohoncon Florencia Wendkuuni Djigma Abdoulaye Diabate Jacques Simpore 《Open Journal of Epidemiology》 2024年第4期565-578,共14页
Background and Objectives: Dengue is an arbovirosis caused by the dengue virus with 04 serotypes. The aim of the study was to characterise the four serotypes (DENV-1, DENV-2, DENV-3 and DENV-4) of the dengue virus cir... Background and Objectives: Dengue is an arbovirosis caused by the dengue virus with 04 serotypes. The aim of the study was to characterise the four serotypes (DENV-1, DENV-2, DENV-3 and DENV-4) of the dengue virus circulating in Ouagadougou, Burkina Faso. Methods: This was a descriptive analytical study that included 2833 patients and was carried out from January 2021 to December 2022. Rapid diagnosis of dengue was performed using the “Dengue Duo (AgNS1/IgM/IgG)” kit (SD Bioline, Korea). Viral RNA was extracted using the QIAGEN RNA RNeasy Plus Mini Kit (Quiagen, Germany) and virus serotypes were identified using the DENGUE Real-TM Genotype PCR kit (Sacace biotechnologies, Italy). Platelet counts were also performed using the XN-1500 Sysmex. Results: The prevalence of acute infections (NS1Ag positive) by TDR was 5.7% (162/2833), with the peak of dengue virus infection occurring between October and November. On the other hand, the AgNS1+ samples tested by RT-PCR were 53.7% positive for dengue virus;this shows the extent of probable cross-reactions with rapid diagnostic tests and false positives. Serotype 1 accounted for 52.6%, 28.4% had serotype 3, 16.8% had serotype 2 and 2.1% had serotype 4. We found cases of co-infection with DENV-1 and DENV-2 in two patients, co-infection with DENV-1 and DENV-3 in three patients, co-infection with DENV-1 and DENV-4 in one patient, co-infection with DENV-3 and DENV-4 in one patient and co-infection with three serotypes, DENV-1, DENV-2 and DENV-3 in one patient. Conclusion: The study showed that all four serotypes of the dengue virus were circulating in Ouagadougou. Serotype 1 was predominant. 展开更多
关键词 Dengue Virus SEROTYPES RT-PCR Burkina Faso
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Beta thalassemia syndromes:New insights
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作者 Ana Dordevic Ines Mrakovcic-Sutic +2 位作者 Sonja Pavlovic Milena Ugrin Jelena Roganovic 《World Journal of Clinical Cases》 SCIE 2025年第10期1-8,共8页
Beta thalassemia(β-thalassemia)syndromes are a heterogeneous group of inherited hemoglobinopathies caused by molecular defects in the beta-globin gene that lead to the impaired synthesis of beta-globin chains of the ... Beta thalassemia(β-thalassemia)syndromes are a heterogeneous group of inherited hemoglobinopathies caused by molecular defects in the beta-globin gene that lead to the impaired synthesis of beta-globin chains of the hemoglobin.The hallmarks of the disease include ineffective erythropoiesis,chronic hemolytic anemia,and iron overload.Clinical presentation ranges from asymptomatic carriers to severe anemia requiring lifelong blood transfusions with subsequent devastating complications.The management of patients with severeβ-thalassemia represents a global health problem,particularly in low-income countries.Until recently,management strategies were limited to regular transfusions and iron chelation therapy,with allogeneic hematopoietic stem cell transplantation available only for a subset of patients.Better understanding of the underlying pathophysiological mechanisms ofβ-thalassemia syndromes and associated clinical phenotypes has paved the way for novel therapeutic options,including pharmacologic enhancers of effective erythropoiesis and gene therapy. 展开更多
关键词 Beta thalassemia HEMOGLOBIN Molecular defects Ineffective erythropoiesis HEMOLYSIS TRANSFUSION Iron chelation Novel therapies
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Ferroptosis,autophagy,and mitochondrial dynamics:Front burners in cancer therapeutics
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作者 Minal Garg Niharika 《World Journal of Clinical Oncology》 2025年第11期9-13,共5页
This article comments on the article by Rana and Prajapati published in the recent issue.Cancer remains the most formidable public health problem and contributes to significant mortality worldwide.Tumor heterogeneity,... This article comments on the article by Rana and Prajapati published in the recent issue.Cancer remains the most formidable public health problem and contributes to significant mortality worldwide.Tumor heterogeneity,toxicity and acquired resistance limit the efficacy of widely used cancer therapies such as radiotherapy,chemotherapy,gene therapy,and immunotherapy.Regulated cell death maintains cellular homeostasis and is a primary hallmark of cancer.Review by Rana and Prajapati discusses the mechanistic regulation of ferroptosis,autophagy,and mitochondrial dynamics in cancer and highlights the therapeutic possibilities of these regulated cell death pathways for developing more effective and targeted cancer therapies,mainly for aggressive and drug-resistant tumors.Considering the important regulatory role of ferroptosis,autophagy and its dynamic interplay with mitochondrial metabolism in tumor pathogenesis,therapy resistance and metastasis,reshaping of the tumor microenvironment with modulations in autophagy and mitochondrial function could sensitize ferroptosis-resistant tumors to anticancer drugs thereby increase the therapeutic efficacy of existing treatment regimens.Deeper understanding of the crosstalk may lead to the identification of non-invasive biomarkers for detecting ferroptosis-sensitive and resistant tumors,prediction of treatment response and the development of clinically translatable pharmacological strategies to maximize patient benefit while minimizing adverse outcomes. 展开更多
关键词 Ferroptosis AUTOPHAGY Mitochondrial metabolism Anti-cancer drugs Therapy resistance
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mTORC1 and mTORC2 synergy in human neural development, disease, and regeneration
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作者 Navroop K.Dhaliwal Julien Muffat Yun Li 《Neural Regeneration Research》 2026年第4期1552-1553,共2页
The mechanistic target of rapamycin(m TOR) is a serine/threonine kinase that plays a pivotal role in cellular growth, proliferation, survival, and metabolism. In the central nervous system(CNS), the mTOR pathway regul... The mechanistic target of rapamycin(m TOR) is a serine/threonine kinase that plays a pivotal role in cellular growth, proliferation, survival, and metabolism. In the central nervous system(CNS), the mTOR pathway regulates diverse aspects of neural development and function. Genetic mutations within the m TOR pathway lead to severe neurodevelopmental disorders, collectively known as “mTORopathies”(Crino, 2020). Dysfunctions of m TOR, including both its hyperactivation and hypoactivation, have also been implicated in a wide spectrum of other neurodevelopmental and neurodegenerative conditions, highlighting its importance in CNS health. 展开更多
关键词 m tor neural development mtorc central nervous system cns mtor neurodevelopmental disorders neurodegenerative conditions
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The CK1-Opaque2 module orchestrates endosperm filling and nutrient storage in maize seeds
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作者 Longyu Liao Yunqin Huang +7 位作者 Shanshan Wang Haoyu Zhang Jingying Pan Zhenglan Long Yongcai Huang Xiaoling Li Di Chen Tao Yang 《The Crop Journal》 2025年第1期192-203,共12页
Phosphorylation is one of the major posttranslational modifications to control plant growth and development.Opaque2(O2)represents a central hub for endosperm filling,which largely determines seed yield and nutrient st... Phosphorylation is one of the major posttranslational modifications to control plant growth and development.Opaque2(O2)represents a central hub for endosperm filling,which largely determines seed yield and nutrient storage in maize.However,it still remains unclear how O2 phosphorylation orchestrates endosperm filling and nutrient quality.Here,we systematically identified the phosphorylation sites of O2 during endosperm filling.A total of 18 phosphorylation sites were found in O2 and five sites were identified to apparently modulate its subcellular localization and transactivation capacity.In addition,a conserved protein kinase CK1 was confirmed to interact with and phosphorylate O2 at the residue Threonine(T)202 to promote O2-mediated transactivation and protein stability.Overexpression of CK1 resulted in increased kernel size,100-kernel weight and nutrient storage.Phosphorylation-mimic O2 seeds at T202 exhibited enhanced kernel dimension,test weight,vitreous endosperm area and nutrient accumulation,whereas the phosphorylation-deficient O2 seeds did not.Collectively,this study establishes a comprehensive phosphocode atlas of O2 during endosperm filling and highlights the importance of phosphorylation modification in O2 to precisely orchestrate maize yield and nutrient quality. 展开更多
关键词 MAIZE ENDOSPERM PHOSPHORYLATION Opaque2 CK1
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Vulvovaginal Candidiasis: Profile of Antifungal Susceptibility Test of Candida Strains to Antifungal Drugs from 2018 to 2022, Ouagadougou, Burkina Faso
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作者 Essi Etonam Dovo Théodora Mahoukèdè Zohoncon +6 位作者 Pegdwendé Abel Sorgho Estelle Ouedraogo Mamadou Baduon Prudence Gouti Marius Belemgnegre Paul Ouedraogo Jacques Simpore 《Advances in Microbiology》 2025年第1期58-69,共12页
Background: Vulvovaginal candidiasis (VVC) is a common cause of significant morbidity, affecting millions of women worldwide. It is estimated that approximately 75%of women of childbearing age will have at least one e... Background: Vulvovaginal candidiasis (VVC) is a common cause of significant morbidity, affecting millions of women worldwide. It is estimated that approximately 75%of women of childbearing age will have at least one episode of candidiasis in their lifetime. In the last decades, resistance to azoles has become a public health problem. Although studies on vulvovaginitis have been done, there is lack of VVC studies in our area. The aim of this study was to describe the etiological and resistance profiles of vulvovaginal candidiasis to standard antifungus at the Saint Camille Hospital of Ouagadougou (HOSCO), Burkina Faso. Methods: We conducted a prospective study from January 2018 to December 2022. From vulvovaginal swabs, Candida species were identified using the ChromID® Candida Agar medium and the API® Candida gallery. Antifungal susceptibility testing was performed using Kirby-Bauer agar disk diffusion. Results: A total of 4789 women were sampled. The average age of sexually active women was 27.80+/−6.77 years, with extremes ranging from 15 to 64 years. Vaginal Candida infections accounted for 74.16% of the cases. The 20 - 29 age group was the most affected by vulvovaginal candidiasis. Pregnant women accounted for 28.76% of our study population. Women in the second (2nd) trimester of pregnancy had more Candida infections. Candida albicans was the most isolated species (55.12%), followed by Candida glabrata (27.64%), Candida tropicalis (6.91%), Candida famata (6.67%), Candida krusei (2.56%). All the Candida species isolated showed very high of resistance to Fluconazole (45.2%), Miconazole (23.7%) and Clotrimazole (45.7%). Conclusion: Species-specific antifungal results should always be considered to avoid antifungal resistance associated with vulvovaginal candidiasis. Identifying the causative species using vaginal fungal cultures can help guide therapy and improve outcomes for these patients. 展开更多
关键词 Vulvovaginal Candidiasis Candida albicans Azole Resistance Burkina Faso
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Polyphenols in Pancreatic Cancer Management:Exploring the Roles and Mechanisms of Resveratrol and Epigallocatechin
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作者 David A de la Garza-Kalife Verónica L Loaiza-Gutiérrez +5 位作者 Esther AlhelíHernández-Tobías Carlos A González-Villarreal Jose Francisco Islas Michelle G Santoyo-Suárez Elsa N Garza-Treviño Paulina Delgado-Gonzalez 《Oncology Research》 2025年第9期2243-2262,共20页
Emerging evidence highlights the potential of bioactive compounds,particularly polyphenols,as adjunctive therapeutic agents in the treatment of pancreatic cancer(PC),one of the most aggressive malignancies.This review... Emerging evidence highlights the potential of bioactive compounds,particularly polyphenols,as adjunctive therapeutic agents in the treatment of pancreatic cancer(PC),one of the most aggressive malignancies.This review focuses on epigallocatechin gallate(EGCG)and resveratrol due to their extensively documented anticancer activity,favorable safety profiles,and their unique ability to modulate multiple signaling pathways relevant to pan-creatic tumorigenesis.Among polyphenols,these two have shown superior anti-cancer activity,epigenetic regulatory effects,and synergy with standard chemotherapies in preclinical pancreatic cancer models.Resveratrol exhibits anti-proliferative effects by modulating key signaling pathways,including phosphatidylinositol 3 kinase(PI3K)/protein kinase B(Akt),nuclear factor kappa-B(NF-κB),and tumor protein 53(p53).EGCG exerts anti-cancer activity by targeting multiple cellular processes,such as oxidative stress reduction,and suppression of inflammatory mediators like Interleukin-6(IL-6)and Tumor Necrosis Factor-α(TNF-α).Both EGCG and resveratrol exert anti-pancreatic cancer effects partly through direct interactions with cell surface receptors and modulation of intracellular cascades.EGCG targets the 67 kDa laminin receptor(67LR),which is overexpressed in pancreatic cancer cells,triggering apoptosis,cyclic guanosine monophosphate(cGMP)production and activation of the PKCδ/acid sphingomyelinase(ASM)cascade.Resveratrol inhibits insulin-like growth factor-1 receptor(IGF-1R)activation of the PI3K/Akt and Wnt signaling pathways,while concurrently activating tumor suppressor p53.These interactions suppress proliferation,promote apoptosis,and reduce epithelial-mesenchymal transition(EMT),thereby limiting tumor progression.Both polyphenols enhance chemosensitivity and reduce resistance to conventional therapies,including gemcitabine,by modulating drug transporters and apoptotic pathways.Furthermore,their epigenetic influence,particularly via DNA methylation and histone modification,suggests a broader role in pancreatic cancer prevention.Understanding the roles and mechanisms of resveratrol and EGCG in pancreatic cancer provides valuable insights into novel treatment strategies.The integration of polyphenols into conventional therapeutic approaches may offer new hope for improving patient outcomes. 展开更多
关键词 Pancreatic cancer(PC) POLYPHENOLS RESVERATROL EPIGALLOCATECHIN bioactive compounds
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Recurrent acute pancreatitis as an initial presentation of primary hyperparathyroidism in juvenile patient
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作者 Milena M Lackovic Bojan D Joksimovic +2 位作者 Jelena C Babovic Esma R Isenovic Zoran M Gluvic 《World Journal of Clinical Cases》 2025年第17期70-73,共4页
Acute pancreatitis recurrence should always alert clinicians to primary hyperparathyroidism,especially in younger patients and those with a hereditary condition.When parathyroid abnormalities are adequately recognized... Acute pancreatitis recurrence should always alert clinicians to primary hyperparathyroidism,especially in younger patients and those with a hereditary condition.When parathyroid abnormalities are adequately recognized and addressed,more recurrent attacks of acute pancreatitis are unlikely to occur. 展开更多
关键词 Acute pancreatitis Parathyroid hormone Primary hyperparathyroidism ULTRASOUND SCINTIGRAPHY Dual-energy X-ray absorptiometry
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Concordance of programmed death-ligand 1 expression assessments determined via two immunohistochemical tests and the polymerase chain reaction method
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作者 Marina A Senchukova Natalia V Saidler +2 位作者 Evgeniya Yu Zubareva Alexander B Prokofiev Dmitry G Tagabilev 《World Journal of Experimental Medicine》 2025年第3期207-220,共14页
BACKGROUND We previously demonstrated that the antibody against programmed cell death protein 1 ligand 1(PDCD1 LG1)is a promising new marker of programmed death-ligand 1(PD-L1)expression that correlates with both brea... BACKGROUND We previously demonstrated that the antibody against programmed cell death protein 1 ligand 1(PDCD1 LG1)is a promising new marker of programmed death-ligand 1(PD-L1)expression that correlates with both breast cancer(BC)clinicopathological characteristics and tumor sensitivity to chemotherapy.However,the concordance of PDCD1 LG1 expression scoring with immunohistochemical(IHC)tests approved for clinical use and with the polymerase chain reaction(PCR)method has not been previously studied.AIM To evaluate the concordance of methods for assessing PD-L1 expression,IHC tests with anti-PD-L1(PDCD1 LG1)and anti-PD-L1(SP142)antibodies and PCR.METHODS This prospective single-center observational cohort study included 148 patients with BC.PD-L1 expression in immune cells was assessed by the IHC method with anti-PD-L1(PDCD1 LG1)and anti-PD-L1(SP142)antibodies and by PCR.The concordance of PD-L1 scores between tests was assessed with positive percentage agreement(PPA)and negative percentage agreement(NPA).The strength of the agreement between the methods was calculated via the Cohen kappa index.P<0.05 was considered statistically significant.RESULTS Regardless of the method used to assess marker expression,PD-L1 expression was significantly more often detected in patients with negative estrogen receptor status,human epidermal growth factor receptor-2-positive(HER2+)status,luminal B HER+BC,nonluminal HER+BC and triple-negative BC.PPA and NPA were 38.3%and 70.4%,respectively,for PD-L1(PDCD1 LG1)and PD-L1(SP142);26.3%and 63.3%,respectively,for PD-L1(PDCD1 LG1)and PD-L1(PCR);and 36.5%and 74.4%,respectively,for PD-L1(SP142)and PD-L1(PCR).Cohen's kappa index for PD-L1(PDCD1 LG1)and PD-L1(SP142)was 0.385(95%CI:0.304–0.466),that for PD-L1(PDCD1 LG1)and PD-L1(PCR)was 0.207(95%CI:0.127–0.287),and that for PD-L1(SP142)and PD-L1(PCR)was 0.389(95%CI:0.309–0.469).CONCLUSION Thus,all three markers of PD-L1 expression are associated with the characteristics of aggressive BC,demonstrating moderate concordance between the tests. 展开更多
关键词 Breast cancer Cohen kappa index Negative percentage agreement Positive percentage agreement Programmed death-ligand 1 Programmed cell death protein 1 ligand 1
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Cancer 3D Models:Essential Tools for Understanding and Overcoming Drug Resistance
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作者 Sofija Jovanovic Stojanov Marija Grozdanic +3 位作者 Mila Ljujic Sandra Dragicevic Miodrag Dragoj Jelena Dinic 《Oncology Research》 2025年第10期2741-2785,共45页
Anticancer drug resistance remains a major challenge in cancer treatment hindering the efficacy of chemotherapy and targeted therapies.Conventional two-dimensional(2D)cell cultures cannot replicate the complexity of t... Anticancer drug resistance remains a major challenge in cancer treatment hindering the efficacy of chemotherapy and targeted therapies.Conventional two-dimensional(2D)cell cultures cannot replicate the complexity of the in vivo tumor microenvironment(TME),limiting their utility for drug resistance research.Therefore,three-dimensional(3D)tumor models have proven to be a promising alternative for investigating chemoresistance mechanisms.In this review,various cancer 3D models,including spheroids,organoids,scaffold-based models,and bioprinted models,are comprehensively evaluated with a focus on their application in drug resistance studies.We discuss the materials,properties,and advantages of each model,highlighting their ability to better mimic the TME and represent complex mechanisms of drug resistance such as epithelial-mesenchymal transition(EMT),drug efflux,and tumor-stroma interactions.Furthermore,we investigate the limitations of these models,including scalability,reproducibility and technical challenges,as well as their potential therapeutic impact on personalized medicine.Through a thorough comparison of model performance,we provide insights into the strengths and weaknesses of each approach and offer guidance for model selection based on specific research needs. 展开更多
关键词 Cancer three-dimensional(3D)models cancer drug resistance preclinical cancer models
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Biomarkers and Underlying Pathways for Prediction of Response to Vedolizumab Therapy in Inflammatory Bowel Disease
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作者 Gloria Krajnc Lara Metlika +1 位作者 Uroš Potocnik Boris Gole 《BIOCELL》 2025年第6期991-1017,共27页
Vedolizumab is a humanized monoclonal antibody and one of the safest biologics for the treatment ofboth forms of inflammatory bowel disease(IBD)-Crohn’s disease and ulcerative colitis.It targets theα4β7 integrinand... Vedolizumab is a humanized monoclonal antibody and one of the safest biologics for the treatment ofboth forms of inflammatory bowel disease(IBD)-Crohn’s disease and ulcerative colitis.It targets theα4β7 integrinand blocks leukocyte trafficking to the gut.Regardless of its efficacy in many patients,non-response to vedolizumabtreatment poses a significant clinical challenge.In this review,we synthesize recent findings on genomic,transcriptomic,proteomic,and cellular biomarkers of vedolizumab response,emphasizing their roles in predicting therapeutic outcomesand understanding non-responsiveness.Key insights include the identification of epigenetic and transcriptomicsignatures,the involvement of Th17 and IL-6 signaling,and the role of baseline inflammatory markers like albumin.Discrepancies in findings highlight the complexity of biomarker discovery and underscore the need for standardized,multiparametric approaches to refine personalized treatment strategies.By bridging knowledge gaps in vedolizumabresponsiveness,this review aims to advance biomarker-driven decision-making and improve outcomes for patientswith IBD. 展开更多
关键词 Inflammatory bowel disease predictive biomarkers anti-α4β7 integrins treatment vedolizumab
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Improving enzymatic degradation of unpretreated poly(ethylene terephthalate)
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作者 Yufeng Cao La Xiang +4 位作者 Jasmina Nikodinovic-Runic Veselin Maslak Jian-Ming Jin Chaoning Liang Shuang-Yan Tang 《Chinese Journal of Catalysis》 2025年第4期375-389,共15页
Although the efficiency of poly(ethylene terephthalate)(PET)degradation has been successfully improved by depolymerase engineering,mostly by using Goodfellow-PET(gf-PET)as a substrate,efforts to degrade unpretreated P... Although the efficiency of poly(ethylene terephthalate)(PET)degradation has been successfully improved by depolymerase engineering,mostly by using Goodfellow-PET(gf-PET)as a substrate,efforts to degrade unpretreated PET materials with high crystallinity remain insufficient.Here,we endeavored to improve the degradation capability of a WCCG mutant of leaf-branch compost cutinase(LCC)on a unpretreated PET substrate(crystallinity>40%)by employing iterative saturation mutagenesis.Using this method,we developed a high-throughput screening strategy appropriate for unpretreated substrates.Through extensive screening of residues around the substrate-binding groove,two variants,WCCG-sup1 and WCCG-sup2,showed good depolymerization capabilities with both high-(42%)and low-crystallinity(9%)substrates.The WCCG-sup1 variant completely depolymerized a commercial unpretreated PET product in 36 h at 72℃.In addition to enzyme thermostability and catalytic efficiency,the adsorption of enzymes onto substrates plays an important role in PET degradation.This study provides valuable insights into the structure-function relationship of LCC. 展开更多
关键词 Iterative saturation mutagenesis Poly(ethylene terephthalate) depolymerization efficiency Substrate adsorption Leaf-branch compost cutinase Unpretreated poly(ethylene terephthalate)
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A high-resolution 20K SNP array for comprehensive genotyping and genetic mapping in Nicotiana tabacum L.
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作者 Shizhou Yu Zhixiao Yang +10 位作者 Jie Zhang Linggai Cao Jie Liu Peng Lu Jiemeng Tao Jufen Wan Qingdong Zeng Tenghang Xu Peijian Cao Jingjing Jin Xueliang Ren 《The Crop Journal》 2025年第2期630-635,共6页
Nicotiana tabacum(2n=4x=48),an economically important non-food crop and a model plant for genetic studies,faces challenges in efficient genotyping of novel germplasm.To address this,we developed the Ta-LD-SC,a 20K SNP... Nicotiana tabacum(2n=4x=48),an economically important non-food crop and a model plant for genetic studies,faces challenges in efficient genotyping of novel germplasm.To address this,we developed the Ta-LD-SC,a 20K SNP Affymetrix Axiom array,based on resequencing data from 150 tobacco accessions.A total of 20,213 unique SNPs were carefully selected,achieving coverage of over 90%of the tobacco genome(Nitab4.5 and NtaSR1)with a uniform probe distribution,limiting density to no more than 5 SNPs per 200 kb.The array underwent extensive validation using 866 tobacco accessions(NP panel)and 288 F2 individuals from a cross between K326 and Oxford 26(GP panel).Performance metrics demonstrated its robustness,with high SNP call rates(93.6%-99.8%),a low technical error rate(<1%),and a superior PolyHighResolution SNP rate(79.79%)compared to other crop SNP arrays.Population structure analysis of the NP panel revealed two major introductions of foreign germplasm that have significantly influenced the genetic diversity of Chinese tobacco resources.Using the array,a genome-wide association study(GWAS)identified 62 genes linked to eight agronomic traits,and a high-density genetic map encompassing 4553 SNPs across 6606.08 cM was constructed.The Ta-LD-SC array provides a valuable tool for rapid,high-quality genotyping offering supporting marker annotations that may benefit genetic research and breeding of tobacco. 展开更多
关键词 Cultivated tobacco SNP array Population structure Differentiation patterns Breeding and genetic improvement
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Effects of glyphosate,antibiotics,and an anticoccidial drug on pancreatic gene expression and blood physiology in broilers
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作者 Georgi Yu.LAPTEV Daria G.TIURINA +13 位作者 Elena A.YILDIRIM Elena P.GORFUNKEL Larisa A.ILINA Valentina A.FILIPPOVA Andrei V.DUBROVIN Alisa S.DUBROVINA Evgeni A.BRAZHNIK Natalia I.NOVIKOVA Veronika K.MELIKIDI Kseniya A.SOKOLOVA Ekaterina S.PONOMAREVA Vasiliy A.ZAIKIN Darren K.GRIFFIN Michael N.ROMANOV 《Journal of Zhejiang University-Science B(Biomedicine & Biotechnology)》 2025年第2期185-199,共15页
Drugs and pesticide residues in broiler feed can compromise the therapeutic and production benefits of antibiotic(ANT)application and affect gene expression.In this study,we analyzed the expression of 13 key pancreati... Drugs and pesticide residues in broiler feed can compromise the therapeutic and production benefits of antibiotic(ANT)application and affect gene expression.In this study,we analyzed the expression of 13 key pancreatic genes and blood physiology parameters after administering one maximum residue limit of herbicide glyphosate(GLY),two ANTs,and one anticoccidial drug(AD).A total of 260 Ross 308 broilers aged 1-40 d were divided into the following four groups of 65 birds each:control group,which was fed the main diet(MD),and three experimental groups,which were fed MD supplemented with GLY,GLY+ANTs(enrofloxacin and colistin methanesulfonate),and GLY+AD(ammonium maduramicin),respectively.The results showed that the addition of GLY,GLY+ANTs,and GLY+AD caused significant changes in the expression of several genes of physiological and economic importance.In particular,genes related to inflammation and apoptosis(interleukin 6(IL6),prostaglandin-endoperoxide synthase 2(PTGS2),and caspase 6(CASP6))were downregulated by up to 99.1%,and those related to antioxidant protection(catalase(CAT),superoxide dismutase 1(SOD1)and peroxiredoxin 6(PRDX6))by up to 98.6%,compared to controls.There was also a significant decline in the values of immunological characteristics in the blood serum observed in the experimental groups,and certain changes in gene expression were concordant with changes in the functioning of the pancreas and blood.The changes revealed in gene expression and blood indices in response to GLY,ANTs,and AD provide insights into the possible mechanisms of action of these agents at the molecular level.Specifically,these changes may be indicative of physiological mechanisms to overcome the negative effects of GLY,GLY+ANTs,and GLY+AD in broilers. 展开更多
关键词 GLYPHOSATE Antibiotic Anticoccidial drug PANCREAS BROILER Gene expression Blood parameter
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Strategies for managing major diseases in Asian seabass aquaculture
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作者 Genhua Yue Changjun Guo 《Animal Diseases》 2025年第3期297-315,共19页
Asian seabass(Lates calcarifer)is becoming an important species for aquaculture.However,the Asian seabass aquaculture industry faces a significant challenge of disease outbreaks that can jeopardize fish health and pro... Asian seabass(Lates calcarifer)is becoming an important species for aquaculture.However,the Asian seabass aquaculture industry faces a significant challenge of disease outbreaks that can jeopardize fish health and production.This review delves into the major diseases affecting Asian seabass aquaculture and explores their causes,symptoms,and management approaches.We focused on the key pathogens responsible for these outbreaks,the environmental factors contributing to disease susceptibility,and the latest advancements in disease prevention and management.By addressing these critical aspects,this review addresses the needs of aquaculturists,researchers,and policymakers with the knowledge required to promote resilient and sustainable Asian seabass farming.We aim to shed light on the challenges posed by disease while highlighting innovative strategies that offer promise for the future of this thriving industry.This comprehensive examination serves as a valuable resource for those invested in ensuring the health and vitality of Asian seabass,securing a consistent supply to meet the demands of global seafood markets. 展开更多
关键词 Asian seabass AQUACULTURE DISEASE PATHOGEN SUSTAINABILITY
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ZmZFP2 encoding a C4HC3-type RING zinc finger protein regulates kernel size and weight in maize
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作者 Long Zhang Qilei Wang +12 位作者 Wenyu Li Qi Zheng Miaomiao Fu Han Wang Xinyu Li Yan Wang Lingwei Hu Weigang Yao Lifeng Wang Huiyong Li Yongbin Dong Yongrui Wu Yuling Li 《The Crop Journal》 2025年第2期418-431,共14页
The development of maize(Zea mays)kernels is a complex physiological process regulated by numerous genes in a spatially and temporally coordinated manner.However,many regulatory genes involved in this process remain u... The development of maize(Zea mays)kernels is a complex physiological process regulated by numerous genes in a spatially and temporally coordinated manner.However,many regulatory genes involved in this process remain unidentified.In this study,we identified ZmZFP2,a gene encoding a C4HC3-type RING zinc finger protein,which regulates kernel size and weight.This discovery was based on suppression subtractive hybridization from maize endosperm in our previous research.We further investigated the role of ZmZFP2 in regulating kernel development.The zmzfp2-ems mutant exhibited significantly reduced kernel size and weight,accompanied by fewer endosperm cells and altered starch and protein accumulation.CRISPR/Cas9-mediated knockouts and overexpression lines confirmed that ZmZFP2 positively regulates kernel size and weight,with overexpression leading to increased kernel size and weight.Transcriptome analysis revealed that ZmZFP2 regulates genes involved in zeatin biosynthesis,starch metabolism,and protein processing,further supporting its role in kernel development.Additionally,ZmZFP2 was shown to interact with the transcription factor ZmEREB98,implicating it in the gene regulatory network during grain filling.Together,these findings demonstrate that ZmZFP2 is a key regulator of maize kernel size and weight,functioning through its E3 ubiquitin ligase activity and interactions with various metabolic pathways.This study provides novel insights into the genetic regulation of kernel development and presents potential strategies for improving maize yield and quality. 展开更多
关键词 MAIZE Kernel weight and size Starch and protein accumulation E3 ubiquitin ligase Transcriptome analysis
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Control efficacy and persistence of fluopyram dust against pine wilt disease
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作者 Yajie Guo Jiayi Ma +5 位作者 Mingqing Weng Rebeca Carballar-Lejarazú Wenlong Jiao Jieqin Wu Feiping Zhang Songqing Wu 《Journal of Forestry Research》 2025年第4期205-214,共10页
The effectiveness of fluopyram suspension concentrate against pine wilt disease(PWD)is limited by spraying efficiency and water dependence.A traditional dust formulation with strong dispersibility can overcome these s... The effectiveness of fluopyram suspension concentrate against pine wilt disease(PWD)is limited by spraying efficiency and water dependence.A traditional dust formulation with strong dispersibility can overcome these shortcomings.However,its efficacy against PWD remains uncertain.This study evaluated the translocation of fluopyram dust within tree tissues,soil and water degradation,and its effective control against PWD.Nursery tests showed effective prevention;field tests showed dust absorption and translocation into pine tissues.Thirty days following application,residual concentrations in soil were low at 0.09 mg kg^(−1);no detectable residues were found in water samples.Three years after applying fluopyram,its effectiveness increased to approximately 87%.Based on this study,fluopyram had a half-life of 346 d with persistence lasting up to three years.This provides valuable insight for managing PWD through dust applications. 展开更多
关键词 Pine wilt disease Fluopyram Dust formulation EFFICACY PERSISTENCE
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