The impact of water temperature(24, 27, 30 and 33℃) and salinity(15, 20, 25, 30 and 33) on oxygen consumption(OCR) and ammonium excretion rate(AER) of ♀ Epinephelus fuscoguttatus ×♂ E. lanceolatus hybrid group...The impact of water temperature(24, 27, 30 and 33℃) and salinity(15, 20, 25, 30 and 33) on oxygen consumption(OCR) and ammonium excretion rate(AER) of ♀ Epinephelus fuscoguttatus ×♂ E. lanceolatus hybrid grouper juveniles(9.39 ± 0.07 g) were investigated under the fed and un-fed conditions. The results showed that the OCR and AER were significantly(P < 0.05) affected by temperature and salinity under both fed and un-fed conditions. When temperature was 24–33℃, the OCR and AER of fed hybrid grouper juveniles were 85.68%–129.52% and 125.78%–287.63%, respectively, higher than those of un-fed hybrid grouper juveniles. The O/N ratio, protein use(P_u), Q_(10)(respiration) and Q_(10)(excretion) of fed hybrid grouper juveniles were 14.43–24.01, 28.35% – 48.48%, 1.69 and 3.01, respectively. The O/N ratio, P_u, Q_(10)(respiration), Q_(10)(excretion) of un-fed hybrid grouper juveniles were 20.39 – 31.79, 22.16% – 34.34%, 1.23 and 1.17, respectively. When salinity was 15–33, the OCR and AER of fed hybrid grouper juveniles increased by 87.42% – 116.85% and 215.38% – 353.57%, respectively, over those of un-fed hybrid grouper juveniles. The O/N ratio and P_u of fed hybrid grouper juveniles were 14.48 – 17.78, 39.36% – 49.43%, respectively. The O/N ratio and Pu of un-fed hybrid grouper juveniles were 20.39 – 31.79 and 22.16% – 34.34%, respectively. The specific dynamic action(SDA) of hybrid grouper juveniles was mainly related to protein metabolism. The results had a guiding significance to the large-scale intensive aquaculture of hybrid grouper juveniles.展开更多
The mitochondrial genome(mitogenome)of hybrid grouper Epinephelus moara(♀)×Epinephelus tukula(♂),a new hybrid progeny,can provide valuable information for analyzing phylogeny and molecular evolution.In this stu...The mitochondrial genome(mitogenome)of hybrid grouper Epinephelus moara(♀)×Epinephelus tukula(♂),a new hybrid progeny,can provide valuable information for analyzing phylogeny and molecular evolution.In this study,the mitogenome was analyzed using PCR amplification and sequenced,then the phylogenetic relationship of E.moara(♀)×E.tukula(♂)and 35 other species were constructed using Maximum Likelihood and NeighborJoining methods with the nucleotide sequences of 13 conserved protein-coding genes(PCGs).The complete mitogenome of E.moara(♀)×E.tukula(♂)was 16695 bp in length,which contained 13 PCGs,2 rRNA genes,22 tRNA genes,a replication origin and a control region.The composition and order of these genes were consistent with most other vertebrates.Of the 13 PCGs,12 PCGs were encoded on the heavy strand,and ND6 was encoded on the light strand.The mitogenome of the E.moara(♀)×E.tukula(♂)had a higher AT nucleotide content,a positive AT-skew and a negative GC-skew.All protein initiation codons were ATG,except for COX and ND4(GTG),ATP6(CTG),and ND3(ATA).ND2,COXII,ND3,ND4 and Cytb had T as the terminating codon,COXIII’s termination codon was TA,and the remaining PCGs of that were TAA.All tRNA genes,except for the lacking DHU-arm of tRNASer(AGN),were predicted to form a typical cloverleaf secondary structure.In addition,sequence similarity analysis(99%identity)and phylogenetic analysis(100%bootstrap value)indicated that the mitochondrial genome was maternally inherited.This study provides mitogenome data for studying genetic,phylogenetic relationships and breeding of grouper.展开更多
Cartilaginous fish(sharks,skates,rays,and chimaeras)are an important group of vertebrates facing the risk of regional extinction due to factors such as overfishing(Pacoureau et al.2021;Finucci et al.2024;Worm et al.20...Cartilaginous fish(sharks,skates,rays,and chimaeras)are an important group of vertebrates facing the risk of regional extinction due to factors such as overfishing(Pacoureau et al.2021;Finucci et al.2024;Worm et al.2024).However,knowledge of their reproduction and conservation remains limited.Understanding the genetic diversity,population structure,and reproductive behaviors of cartilaginous fish can offer valuable insights into their reproductive strategies and ecological adaptability,which are crucial for the conservation of these vulnerable species.Here,we present a chromosome-level draft genome as well as whole genome resequencing data of seven other individuals for the Kong skate(Okamejei kenojei),a species that has been reported to have a population decrease based on fisheries resource surveys(Deng&Jin 2001;Rigby et al.2021).Our analysis revealed lineage-specific genomic changes in O.kenojei,including the expansion of 69 gene families.We also assessed their genetic diversity,which showed a decline in population size over the past million years.Furthermore,we examined the egg-laying behavior of 24 adult female specimens and the incubation period of 35 embryos,indicating a low reproductive capacity.In conclusion,our findings suggest that the genetic diversity of the current wild population of O.kenojei is relatively healthy,but their reproductive output is low.Without proper management and protection,this could lead to irreversible impacts on the population,highlighting the importance of conservation efforts for this species.展开更多
基金supported by the project of National Science and Technology Supporting Plan (No. 2011BAD13B04)
文摘The impact of water temperature(24, 27, 30 and 33℃) and salinity(15, 20, 25, 30 and 33) on oxygen consumption(OCR) and ammonium excretion rate(AER) of ♀ Epinephelus fuscoguttatus ×♂ E. lanceolatus hybrid grouper juveniles(9.39 ± 0.07 g) were investigated under the fed and un-fed conditions. The results showed that the OCR and AER were significantly(P < 0.05) affected by temperature and salinity under both fed and un-fed conditions. When temperature was 24–33℃, the OCR and AER of fed hybrid grouper juveniles were 85.68%–129.52% and 125.78%–287.63%, respectively, higher than those of un-fed hybrid grouper juveniles. The O/N ratio, protein use(P_u), Q_(10)(respiration) and Q_(10)(excretion) of fed hybrid grouper juveniles were 14.43–24.01, 28.35% – 48.48%, 1.69 and 3.01, respectively. The O/N ratio, P_u, Q_(10)(respiration), Q_(10)(excretion) of un-fed hybrid grouper juveniles were 20.39 – 31.79, 22.16% – 34.34%, 1.23 and 1.17, respectively. When salinity was 15–33, the OCR and AER of fed hybrid grouper juveniles increased by 87.42% – 116.85% and 215.38% – 353.57%, respectively, over those of un-fed hybrid grouper juveniles. The O/N ratio and P_u of fed hybrid grouper juveniles were 14.48 – 17.78, 39.36% – 49.43%, respectively. The O/N ratio and Pu of un-fed hybrid grouper juveniles were 20.39 – 31.79 and 22.16% – 34.34%, respectively. The specific dynamic action(SDA) of hybrid grouper juveniles was mainly related to protein metabolism. The results had a guiding significance to the large-scale intensive aquaculture of hybrid grouper juveniles.
基金The Key Research and Development Program of Shandong Province under contact No.2019GHY112063the Breeding Project of Shandong Province under contract No.2019LZGC020+1 种基金the Central Public-interest Scientific Institution Basal Research Fund Chinese Academy of Fishery Sciences under contract Nos 2020XT0601,2020TD19 and 2020TD25the Yellow Sea Fisheries Research Institute Research Fees under contract Nos 20603022019002 and 20603022020015
文摘The mitochondrial genome(mitogenome)of hybrid grouper Epinephelus moara(♀)×Epinephelus tukula(♂),a new hybrid progeny,can provide valuable information for analyzing phylogeny and molecular evolution.In this study,the mitogenome was analyzed using PCR amplification and sequenced,then the phylogenetic relationship of E.moara(♀)×E.tukula(♂)and 35 other species were constructed using Maximum Likelihood and NeighborJoining methods with the nucleotide sequences of 13 conserved protein-coding genes(PCGs).The complete mitogenome of E.moara(♀)×E.tukula(♂)was 16695 bp in length,which contained 13 PCGs,2 rRNA genes,22 tRNA genes,a replication origin and a control region.The composition and order of these genes were consistent with most other vertebrates.Of the 13 PCGs,12 PCGs were encoded on the heavy strand,and ND6 was encoded on the light strand.The mitogenome of the E.moara(♀)×E.tukula(♂)had a higher AT nucleotide content,a positive AT-skew and a negative GC-skew.All protein initiation codons were ATG,except for COX and ND4(GTG),ATP6(CTG),and ND3(ATA).ND2,COXII,ND3,ND4 and Cytb had T as the terminating codon,COXIII’s termination codon was TA,and the remaining PCGs of that were TAA.All tRNA genes,except for the lacking DHU-arm of tRNASer(AGN),were predicted to form a typical cloverleaf secondary structure.In addition,sequence similarity analysis(99%identity)and phylogenetic analysis(100%bootstrap value)indicated that the mitochondrial genome was maternally inherited.This study provides mitogenome data for studying genetic,phylogenetic relationships and breeding of grouper.
基金supported by the National Key R&D Program of China(2022YFC3400300).
文摘Cartilaginous fish(sharks,skates,rays,and chimaeras)are an important group of vertebrates facing the risk of regional extinction due to factors such as overfishing(Pacoureau et al.2021;Finucci et al.2024;Worm et al.2024).However,knowledge of their reproduction and conservation remains limited.Understanding the genetic diversity,population structure,and reproductive behaviors of cartilaginous fish can offer valuable insights into their reproductive strategies and ecological adaptability,which are crucial for the conservation of these vulnerable species.Here,we present a chromosome-level draft genome as well as whole genome resequencing data of seven other individuals for the Kong skate(Okamejei kenojei),a species that has been reported to have a population decrease based on fisheries resource surveys(Deng&Jin 2001;Rigby et al.2021).Our analysis revealed lineage-specific genomic changes in O.kenojei,including the expansion of 69 gene families.We also assessed their genetic diversity,which showed a decline in population size over the past million years.Furthermore,we examined the egg-laying behavior of 24 adult female specimens and the incubation period of 35 embryos,indicating a low reproductive capacity.In conclusion,our findings suggest that the genetic diversity of the current wild population of O.kenojei is relatively healthy,but their reproductive output is low.Without proper management and protection,this could lead to irreversible impacts on the population,highlighting the importance of conservation efforts for this species.
