Endochondral ossification is a physiological process involving a sequential formation of cartilage and bone tissues.Classically,cartilage and bone formation have been considered independent processes at cellular level...Endochondral ossification is a physiological process involving a sequential formation of cartilage and bone tissues.Classically,cartilage and bone formation have been considered independent processes at cellular level.However,the recently described multiple cell differentiation dynamics suggest that some bone cells are indeed the progeny of cartilage cells,or chondrocyte-derived osteoblasts.We hypothesized that the cartilage-to-bone phenotype transition is triggered by specific molecular events.First,the process was assessed in mouse bone tissue,and then,it was mimicked using in vivo cell implantation and in vitro serial differentiation protocols.Data indicates that cartilage cells transition to bone cell phenotype during postnatal physiological bone formation.This process can be reproduced using cartilage precursor cells coupled to specific implantation procedures or differentiation protocols.Gene expression profiling reveals that NOTCH,BMP and MAPK signaling pathways are relevant at the phenotype-switch,while the transcription factors Mesp1,Alx1,Grhl3 and Hmx3 are the feasible driver genes for chondrocyte-derived osteoblasts formation.Altogether,this report shows that endochondral ossification can be modeled using primary cell cultures and data indicate that this process is regulated by specific molecular events,previously described at skeleton morphogenesis during embryo development,and from now on also linkable to postnatal bone development and regeneration processes.展开更多
Today,environmental studies based on satellite imagery are known as making valuable contributions to the dynamics and spatial prediction of sensitive or complex ecosystems such as wide protected areas and represent su...Today,environmental studies based on satellite imagery are known as making valuable contributions to the dynamics and spatial prediction of sensitive or complex ecosystems such as wide protected areas and represent sustainable decision tools.The Pendjari and W Transboundary Reserves which constitute biodiversity reservoirs,habitats for wildlife conservation lack substantial investigations on the vegetation dynamics.Despite the protection measures they benefit from,these reserves remain dependent on climatic hazards that can influence their stability.The present study is innovative since it applied remote sensing techniques combinedwith climate records fromthe last thirty years to analyze the past dynamics of land use and climate changes to predict the future trends of the vegetation cover of the two national parks in Benin,as well as their peripheries.The methodology used remote sensing and Geographic Information System(GIS)techniques that allowed the supervised classification of Landsat images from 1985,2000 and 2015.Climatic data were combined in R software to identify the break periods for climatic parameters.Finally,the predictive vegetation cover for the year 2030 was made by combining vegetation and climatic data in the“Land Change Modeler”extension.Results show ten land use and land cover classes which are the agglomerations,mosaics of fields and fallows,water bodies,dense forests,gallery forests,clear forests and wooded savannahs,swamp forests and shrubby wooded savannahs,saxicolous savannahs and bare ground.The natural vegetation decreased from 90.85%in 1985 to 83.54% in 2000 then to 79.56% in 2015,representing a decline of 11.39%over a study period of 30 years.The analysis of the climatic curves revealed the presence of a break,meaning drought frequencies.Thepredictivemodeling showed that land use units projected up to the year 2030 are consistent with past trends,but with the continued expansion of fields and fallows(2%)instead of the natural vegetation.This study not only provides good insights useful in the sustainable management of the Biosphere Reserves but will also motivate many other researches towards such ecosystems.展开更多
Wavelet analyses are applied to the Pacific Decadal Oscillation index and North Pacific index for the period 1900-2000, which identifies two dominant interdecadal components, the bidecadal (15-25-yr) and pentadecadal ...Wavelet analyses are applied to the Pacific Decadal Oscillation index and North Pacific index for the period 1900-2000, which identifies two dominant interdecadal components, the bidecadal (15-25-yr) and pentadecadal (50 70-yr) modes. Joint propagating patterns of sea surface temperature (SST) and sea level pressure (SLP) anomalies in the North Pacific for the two modes are revealed by using the techniques of multi-channel singular spectrum analysis (MSSA) and linear regression analysis with the global sea surface temperature (GISST) data and the northern hemispheric SLP data for the common period 1903 1998. Significant differences in spatio-temporal structures are found between the two modes. For the bidecadal mode, SST anomalies originating from the Gulf of Alaska appear to slowly spread southwestward, inducing a reversal of early SST anomalies in the central North Pacific. Due to further westward spreading, the SST variation of the central North Pacific leads that of the Kuroshio-Oyashio Extension (KOE) region by approximately 4 to 5 years. Concomitantly, SLP anomalies spread over most parts of the North Pacific during the mature phase and then change into an NPO(North Pacific Oscillation)-like pattern during the transition phase. For the pentadecadal mode, SST anomalies develop in the southeast tropical Pacific and propagate along the North American coast to the mid-latitudes; meanwhile, SST anomalies with the same polarity in the western tropical Pacific expand northward to Kuroshio and its extension region; both merge into the central North Pacific reversing the sign of early SST anomalies there. Accompanying SLP anomalies are characterized by an NPO-like pattern during the mature phase while they are dominant over the North Pacific during the transitional phase. The bidecadal and pentadecadal modes have different propagating patterns, suggesting that the two interdecadal modes may arise from different physical mechanisms.展开更多
Emotion recognition from speech data is an active and emerging area of research that plays an important role in numerous applications,such as robotics,virtual reality,behavior assessments,and emergency call centers.Re...Emotion recognition from speech data is an active and emerging area of research that plays an important role in numerous applications,such as robotics,virtual reality,behavior assessments,and emergency call centers.Recently,researchers have developed many techniques in this field in order to ensure an improvement in the accuracy by utilizing several deep learning approaches,but the recognition rate is still not convincing.Our main aim is to develop a new technique that increases the recognition rate with reasonable cost computations.In this paper,we suggested a new technique,which is a one-dimensional dilated convolutional neural network(1D-DCNN)for speech emotion recognition(SER)that utilizes the hierarchical features learning blocks(HFLBs)with a bi-directional gated recurrent unit(BiGRU).We designed a one-dimensional CNN network to enhance the speech signals,which uses a spectral analysis,and to extract the hidden patterns from the speech signals that are fed into a stacked one-dimensional dilated network that are called HFLBs.Each HFLB contains one dilated convolution layer(DCL),one batch normalization(BN),and one leaky_relu(Relu)layer in order to extract the emotional features using a hieratical correlation strategy.Furthermore,the learned emotional features are feed into a BiGRU in order to adjust the global weights and to recognize the temporal cues.The final state of the deep BiGRU is passed from a softmax classifier in order to produce the probabilities of the emotions.The proposed model was evaluated over three benchmarked datasets that included the IEMOCAP,EMO-DB,and RAVDESS,which achieved 72.75%,91.14%,and 78.01%accuracy,respectively.展开更多
Based on the NCEP (National Centers for Environmental Prediction) data,the relationship between the Sea Surface Temperature Anomalies (SSTAs) in the North Pacific and the atmospheric circulation anomalies in January 2...Based on the NCEP (National Centers for Environmental Prediction) data,the relationship between the Sea Surface Temperature Anomalies (SSTAs) in the North Pacific and the atmospheric circulation anomalies in January 2008 is analyzed in this study.The SSTA mode most correlated with the Geopotential Height anomalies (GHAs) in January 2008 in the North Pacific exhibited a basin-wide horseshoe pattern with a warm center in November 2007.This persistent SSTA pattern would induce positive GHAs in the Aleutian Low area and East Asia and the northward extension of the West Pacific Subtropical High in January 2008 by maximum diabatic heating in the atmosphere over the Kuroshio Oyashio Extension (KOE) area,leading to the occurence of the circumpolar trough-ridge wave train anomaly in January 2008.展开更多
Background The market for new drugs and procedures is substantial, and companies will continue to earmark major sums for the development of new drugs for many years to come. Access to the most up-to-date knowledge is ...Background The market for new drugs and procedures is substantial, and companies will continue to earmark major sums for the development of new drugs for many years to come. Access to the most up-to-date knowledge is therefore essential for the pharmaceutical companies in the competitive race to develop new proprietary drugs. In recent years, the pharmaceutical industry continuously increased their outsourcing strategy展开更多
Aim: The present project is to seek the possible electrical stimulation parameter by which wind-up of withdrawal reflex of rats and set up a appropriate animal model for recording the withdrawal reflex of wind-up phen...Aim: The present project is to seek the possible electrical stimulation parameter by which wind-up of withdrawal reflex of rats and set up a appropriate animal model for recording the withdrawal reflex of wind-up phenomenon. Meanwhile, a parallel comparison will be made between the recording of withdrawal reflex and dorsal horn (DH) neuron responses in order to investigate the possible correlation associated with sensory and motor interaction of pain information via simultaneous recording. On the other hand, another comparison展开更多
This study is the first to evaluate the phytochemical content and biological properties of Tunisian T.platyphyllos Scop.A total of 23 compounds of essential oils were identified by gas chromatography-mass spectrometry...This study is the first to evaluate the phytochemical content and biological properties of Tunisian T.platyphyllos Scop.A total of 23 compounds of essential oils were identified by gas chromatography-mass spectrometry(GC-MS)analysis of bracts and fruit extracts.The results show that oxygenated monoterpenes were the dominant class of essential oils.The phenolic composition was investigated by matrix-assisted laser desorption/ionizationtime of flight(MALDI-TOF).The analysis showed that the chemical profiles of the ethanolic extracts of bracts and fruits are substantially similar.The highest polyphenol content was found in the ethanolic extracts of the fruits(7.65 mg gallic acid equivalents(GAE).g−1 on dry weight(DW).As for the antioxidant capacity,it was recorded in the essential oils of the fruits(IC_(50)=0.91 mg.mL^(−1)).The results obtained showed that the antioxidant activity of the fruit essential oil was higher than that of the ethanol extract.The fruit essential oil was also found to have the highest reducing power(IC_(50)=0.67 mg.mL^(−1)).In terms of iron-chelating power,fruit essential oil has the highest chelating power(IC_(50)=2.03 mg.mL^(−1)).Compared to the ethanolic extract,the essential oil had the maximum antioxidant capacity.The enzymatic activity of acetylcholinesterase(AChE)inhibition of the essential oil from T.platyphyllos bracts had the most potent inhibitory effect(IC_(50)=0.77 mg.mL^(−1)),followed by the essential oil from the fruits(IC_(50)=0.95 mg.mL^(−1)).The results suggest that T.platyphyllos can be used as a potential source of naturally occurring bioactive compounds and antioxidants.展开更多
Salvia microphylla and Teucrium polium are medicinal and aromatic plants with ethnobotanical uses.The present study was conducted to investigate the chemical composition of Salvia microphylla and Teucrium polium essen...Salvia microphylla and Teucrium polium are medicinal and aromatic plants with ethnobotanical uses.The present study was conducted to investigate the chemical composition of Salvia microphylla and Teucrium polium essential oils,the secondary metabolites,and the biological activities of their infusion and methanolic(MeOH)extracts.Essential oils were extracted by hydrodistillation from shoots Salvia microphylla and Teucrium polium.Phenolic content,antioxidant and antimicrobial activities were determined.Gas chromatography-mass spectrometry(GCMS)results showed the presence of significant qualitative and quantitative variations for the composition of the both essential oils(EO).Salvia microphylla EO were most complex and present 70 compounds with the major components wereβ-caryophyllene(13.32%),1,8 cineole(11.25%),Cis p-Menthane-3-one(10.74%),andβ-Selinenol(9.71%).Where in the Teucrium polium EO,45 compounds were identified with the important components areβ-cadinene(10%),β-citronellol(8.5%),Carvacrol(7.63%),and Eugenol(7.15%).Obtained results showed that both plant are very rich in secondary metabolites.Extracts isolated from Salvia microphylla presented the highest contents in the phenolic compound than extracted from Teucrium polium.The antioxidant activity data demonstrated that all extracts showed strong antioxidant and radical scavenging activities.Essential oil and methanol extracts presented a potential for antimicrobial activities against all tested microorganisms.The obtained results highlight the potential use of Salvia microphylla and Teucrium polium as possible natural antioxidant substances and sources of bioactive molecules.展开更多
Melioidosis, an infection caused by Gram-negative Burkholderia pseudomallei (Bp), has high clinical recurrence and mortality rates associated with pneumonia and sepsis. With the limitations in current therapeutic opti...Melioidosis, an infection caused by Gram-negative Burkholderia pseudomallei (Bp), has high clinical recurrence and mortality rates associated with pneumonia and sepsis. With the limitations in current therapeutic options and the lack of available human vaccines, development of novel countermeasures against Bp infection is vital. In this study, we evaluated the efficacy of an aminoalkyl glucosaminide 4-phosphate (AGP), a synthetic toll like receptor 4 agonist (CRX-527), in conferring protection against melioidosis in a murine model. Survival data showed 66% of mice treated with AGP prior to lethal intranasal Bp challenge survived and presented no signs of illness over a 3 months period. In contrast, all control mice succumbed to infection within 4 days. Kinetic study on organ bacterial burden demonstrated mice treated with AGP had dramatically reduced bacterial loads in both the lungs and spleens as compared to control mice. Notably, all but one AGP-treated mouse had no Bp growth in the blood as compared to overwhelming bacteraemia found in all control mice. The protective effect of CRX-527 was associated with a transient increase in pulmonary cytokine/ chemokine levels, which boosted the host’s innate immunity. This enabled rapid clearance of the pulmonary and systemic bacterial burden and prevented the development of sepsis. This study demonstrated the potential use of TLR4 agonist as a prophylactic immunotherapy in preventing melioidosis.展开更多
Dear Editor,Previous studies had described the adaptation of enterovirus 71(EV-A71)strains that enabled entry and viral replication in Chinese Hamster Ovary(CHO)cell line(Zaini and McMinn 2012;Zaini et al.2012).These ...Dear Editor,Previous studies had described the adaptation of enterovirus 71(EV-A71)strains that enabled entry and viral replication in Chinese Hamster Ovary(CHO)cell line(Zaini and McMinn 2012;Zaini et al.2012).These adapted strains derived from serial passage of a clinical isolate in CHO cells exhibited an amino acid substitution at VP2149,which enhanced viral replication by 100*1000-fold compared to the clinical isolate.The VP2149 mutation was claimed responsible for adaptation to CHO-K1 cells without performing detailed molecular analyses to support these claims.In this study,we evaluate various VP1 and VP2 mutations in two CHO-adapted EV-A71 strains derived in our lab to assess their contribution to the phenotype of CHO cell adaptation.展开更多
Drought and salt stress are two major environmental constraints that limit the productivity of agriculture crops worldwide. WRKY transcription factors are the plant-specific transcription factors that regulate several...Drought and salt stress are two major environmental constraints that limit the productivity of agriculture crops worldwide. WRKY transcription factors are the plant-specific transcription factors that regulate several developmental events and stress responses in plants. The WRKY domain is defined by a 60-amino acid conserved sequence named WRKYGQK at N-terminal and a Zinc Finger-like motif at the C-terminal. WRKY genes are known to respond several stresses which may act as negative or positive regulators. The function of most of the WRKY transcription factors from non-model plants remains poorly understood. This investigation shows the expression levels of eight WRKY transcription factor genes from horsegram plant under drought and salt stress conditions. The increase in mRNA transcript levels of WRKY transcription factor genes was found to be high in drought stressed plants compared to salt-stressed plants. The levels of MDA which indicates the lipid peroxidation were less in drought stress. More ROS is produced in salt stress conditions compared to drought. The results show that the expression of WRKY transcription factors in drought stress conditions is reducing the adverse effect of stress on plants. These results also suggest that, during abiotic stress conditions such as drought and salt stress, WRKY transcription factors are regulated at the transcription level.展开更多
Antigen interaction with specific IgE bound to the high-affinity Fc receptor for IgE, constitutively expressed on the cell-surface of mast cells, generates signals that cause a shift in the resting state equilibrium o...Antigen interaction with specific IgE bound to the high-affinity Fc receptor for IgE, constitutively expressed on the cell-surface of mast cells, generates signals that cause a shift in the resting state equilibrium of phosphorylation and dephosphorylation events that serves to maintain homeostasis. The outcome of this activated state is the release of a wide array of preformed and newly synthesized pro-inflammatory mediators. During the past few years, the existence of a negative feedback loop initiated upon FcεRI engagement has also been envisaged. This negative signal involves the coordinated action of adaptors, phosphatases and ubiquitin ligases that limits the intensity and duration of positive signals, thus modulating mast cell functions. Relevant to this, others and we have demonstrated that Cbl family proteins control the amplitude of FcεRI-generated signals by specific ubiquitin modification of activated receptor subunits and associated protein tyrosine kinases. In this article, we review advances in our understanding of the molecular mechanisms through which Cbl proteins regulate FcεRI expression and signaling.展开更多
Pen-based user interfaces which leverage the affordances of the pen provide userswith more flexibility and natural interaction. However, it is difficult to construct usable pen-baseduser interfaces because of the lack...Pen-based user interfaces which leverage the affordances of the pen provide userswith more flexibility and natural interaction. However, it is difficult to construct usable pen-baseduser interfaces because of the lack of support for their development. Toolkit-level support has beenexploited to solve this problem, but this approach makes it hard to gain platform independence,easy maintenance and easy extension. In this paper a context-aware infrastructure is created,called WEAVER, to provide pen interaction services for both novel pen-based applications andlegacy GUI-based applications. WEAVER aims to support the pen as another standard interactivedevice along with the keyboard and mouse and present a high-level access interface to pen input.It employs application context to tailor its service to different applications. By modeling theapplication context and registering the relevant action adapters, WEAVER can offer services,such as gesture recognition, continuous handwriting and other fundamental ink manipulations, toappropriate applications. One of the distinct features of WEAVER is that off-the-shelf GUI-basedsoftware packages can be easily enhanced with pen interaction without modifying the existing code.In this paper, the architecture and components of WEAVER are described. In addition, examplesand feedbacks of its use are presented.展开更多
Concurrent perception of static and dynamic tactile stimuli is essential for natural haptic feedback and precise manipulation.However,most artificial tactile sensors remain limited to either static,dynamic,or temperat...Concurrent perception of static and dynamic tactile stimuli is essential for natural haptic feedback and precise manipulation.However,most artificial tactile sensors remain limited to either static,dynamic,or temperature sensing due to reliance on specific mechanisms for each modality.Integrating these capabilities in a single artificial receptor is still challenging,particularly when spike-based signals are used as the primary encoding strategies.Here,we present an artificial sensory receptor that decodes spike patterns to perceive static,dynamic,and thermal stimuli simultaneously.By applying a pulsed DC bias across a mixed ion-electron conductor,the device continuously produces encoded spike patterns without additional signal conversion circuitry.Furthermore,the engineered combination of stretchable electrodes and the mixed conductor allows decoupling of mechanical and thermal responses,eliminating signal interference.This simple structure enables reliable,real-time recognition of multiple tactile inputs,including pressure,strain,temperature,and vibration,through a single channel.展开更多
Green food in China refers to a wide array of primary and processed agricultural products that are safe,nutritious and of high quality for human consumption.Green food has been certified and produced following the pri...Green food in China refers to a wide array of primary and processed agricultural products that are safe,nutritious and of high quality for human consumption.Green food has been certified and produced following the principle of sustainability since the 1990 s,making historic achievements in providing quality food,protecting the environment,increasing farmer income,and nurturing agricultural brands over the past 30 years in China.Today,the green food industry enters a steady-growth stage in terms of cultivation area,product number and sales.This article summarizes the history of the development of green food in China and current achievements,analyze major challenges that may hamper further development of the industry,and propose strategies to address these challenges,i.e.,optimization of the food supply chain,deep food processing,and utilization of food wastes.展开更多
Sordariomycetes is one of the largest classes of Ascomycota and is characterised by perithecial ascomata and inoperculate unitunicate asci.The class includes many important plant pathogens,as well as endophytes,saprob...Sordariomycetes is one of the largest classes of Ascomycota and is characterised by perithecial ascomata and inoperculate unitunicate asci.The class includes many important plant pathogens,as well as endophytes,saprobes,epiphytes,and fungicolous,lichenized or lichenicolous taxa.The class includes freshwater,marine and terrestrial taxa and has a worldwide distribution.This paper provides an updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the class.Based on phylogeny and morphology we introduced three subclasses;Diaporthomycetidae,Lulworthiomycetidae and Meliolomycetidae and five orders;Amplistromatales,Annulatascales,Falcocladiales,Jobellisiales and Togniniales.The outline is based on literature to the end of 2014 and the backbone tree published in this paper.Notes for 397 taxa with information,such as new family and genera novelties,novel molecular data published since the Outline of Ascomycota 2009,and new links between sexual and asexual genera and thus synonymies,are provided.The Sordariomycetes now comprises six subclasses,28 orders,90 families and 1344 genera.In addition a list of 829 genera with uncertain placement in Sordariomycetesis also provided.展开更多
Sordariomycetes is one of the largest classes of Ascomycota that comprises a highly diverse range of fungi characterized mainly by perithecial ascomata and inoperculate unitunicate asci.The class includes many importa...Sordariomycetes is one of the largest classes of Ascomycota that comprises a highly diverse range of fungi characterized mainly by perithecial ascomata and inoperculate unitunicate asci.The class includes many important plant pathogens,as well as endophytes,saprobes,epiphytes,coprophilous and fungicolous,lichenized or lichenicolous taxa.They occur in terrestrial,freshwater and marine habitats worldwide.This paper reviews the 107 families of the class Sordariomycetes and provides a modified backbone tree based on phylogenetic analysis of four combined loci,with a maximum five representative taxa from each family,where available.This paper brings together for the first time,since Barrs’1990 Prodromus,descriptions,notes on the history,and plates or illustrations of type or representative taxa of each family,a list of accepted genera,including asexual genera and a key to these taxa of Sordariomycetes.Delineation of taxa is supported where possible by molecular data.The outline is based on literature to the end of 2015 and the Sordariomycetes now comprises six subclasses,32 orders,105 families and 1331 genera.The family Obryzaceae and Pleurotremataceae are excluded from the class.展开更多
In trypanosomatids, the RNA polymerase I （RNAPI）-dependent promoters controlling the ribosomal RNA （rRNA） genes have been well identified. Although the RNAPI transcription machinery recognizes the DNA conformation...In trypanosomatids, the RNA polymerase I （RNAPI）-dependent promoters controlling the ribosomal RNA （rRNA） genes have been well identified. Although the RNAPI transcription machinery recognizes the DNA conformation instead of the DNA sequence of promoters, no con- formational study has been reported for these promoters. Here we present the in silico analysis of the intrinsic DNA curvature of the rRNA gene core promoters in Trypanosoma brucei, Trypanosoma cruzi, and Leiskmania major. We found that, in spite of the absence of sequence conservation, these promoters hold conformational properties similar to other eukaryotic rRNA promoters. Our results also indicated that the intrinsic DNA curvature pattern is conserved within the Leishmania genus and also among strains of T. cruzi and T. brucei. Furthermore, we analyzed the impact of point mutations on the intrinsic curvature and their impact on the promoter activity. Furthermore, we found that the core promoters of protein-coding genes transcribed by RNAPI in T. brucei show the same conserved conformational characteristics. Overall, our results indicate that DNA intrinsic curvature of the rRNA gene core promoters is conserved in these ancient eukaryotes and such con- served curvature might be a requirement of RNAPI machinery for transcription of not only rRNA genes but also protein-coding genes.展开更多
This paper is a compilation of notes on 110 fungal taxa,including one new family,10 new genera,and 76 new species,representing a wide taxonomic and geographic range.The new family,Paradictyoarthriniaceae is introduced...This paper is a compilation of notes on 110 fungal taxa,including one new family,10 new genera,and 76 new species,representing a wide taxonomic and geographic range.The new family,Paradictyoarthriniaceae is introduced based on its distinct lineage in Dothideomycetes and its unique morphology.The family is sister to Biatriosporaceae and Roussoellaceae.The new genera are Allophaeosphaeria(Phaeosphaeriaceae),Amphibambusa(Amphisphaeriaceae),Brunneomycosphaerella(Capnodiales genera incertae cedis),Chaetocapnodium(Capnodiaceae),Flammeascoma(Anteagloniaceae),Multiseptospora(Pleosporales genera incertae cedis),Neogaeumannomyces(Magnaporthaceae),Palmiascoma(Bambusicolaceae),Paralecia(Squamarinaceae)and Sarimanas(Melanommataceae).The newly described species are the Ascomycota Aliquandostipite manochii,Allophaeosphaeria dactylidis,A.muriformia,Alternaria cesenica,Amphibambusa bambusicola,Amphisphaeria sorbi,Annulohypoxylon thailandicum,Atrotorquata spartii,Brunneomycosphaerella laburni,Byssosphaeria musae,Camarosporium aborescentis,C.aureum,C.frutexensis,Chaetocapnodium siamensis,Chaetothyrium agathis,Colletotrichum sedi,Conicomyces pseudotransvaalensis,Cytospora berberidis,C.sibiraeae,Diaporthe thunbergiicola,Diatrype palmicola,Dictyosporium aquaticum,D.meiosporum,D.thailandicum,Didymella cirsii,Dinemasporium nelloi,Flammeascoma bambusae,Kalmusia italica,K.spartii,Keissleriella sparticola,Lauriomyces synnematicus,Leptosphaeria ebuli,Lophiostoma pseudodictyosporium,L.ravennicum,Lophiotrema eburnoides,Montagnula graminicola,Multiseptospora thailandica,Myrothecium macrosporum,Natantispora unipolaris,Neogaeumannomyces bambusicola,Neosetophoma clematidis,N.italica,Oxydothis atypica,Palmiascoma gregariascomum,Paraconiothyrium nelloi,P.thysanolaenae,Paradictyoarthrinium tectonicola,Paralecia pratorum,Paraphaeosphaeria spartii,Pestalotiopsis digitalis,P.dracontomelon,P.italiana,Phaeoisaria pseudoclematidis,Phragmocapnias philippinensis,Pseudocamarosporium cotinae,Pseudocercospora tamarindi,Pseudotrichia rubriostiolata,P.thailandica,Psiloglonium multiseptatum,Saagaromyces mangrovei,Sarimanas pseudofluviatile,S.shirakamiense,Tothia spartii,Trichomerium siamensis,Wojnowicia dactylidicola,W.dactylidis and W.lonicerae.The Basidiomycota Agaricus flavicentrus,A.hanthanaensis,A.parvibicolor,A.sodalis,Cantharellus luteostipitatus,Lactarius atrobrunneus,L.politus,Phylloporia dependens and Russula cortinarioides are also introduced.Epitypifications or reference specimens are designated for Hapalocystis berkeleyi,Meliola tamarindi,Pallidocercospora acaciigena,Phaeosphaeria musae,Plenodomus agnitus,Psiloglonium colihuae,P.sasicola and Zasmidium musae while notes and/or new sequence data are provided for Annulohypoxylon leptascum,A.nitens,A.stygium,Biscogniauxia marginata,Fasciatispora nypae,Hypoxylon fendleri,H.monticulosum,Leptosphaeria doliolum,Microsphaeropsis olivacea,Neomicrothyrium,Paraleptosphaeria nitschkei,Phoma medicaginis and Saccotheciaceae.A full description of each species is provided with light micrographs(or drawings).Molecular data is provided for 90 taxa and used to generate phylogenetic trees to establish a natural classification for species.展开更多
基金funded by Grants PID2021-127191OB-I00,RTI2018-101708-A-I00,PRE2018-084542 and PRE2022-102680 funded by MCIN/AEI/10.13039/501100011033 and by“ERDF A way of making Europe”Grant RYC2018-025502-I is funded by MCIN/AEI/10.13039/501100011033 and by“ESF Investing in your future”+1 种基金Grant MDM-20170720 Maria de Maeztu Units of Excellence Program funded by the Spanish State Research Agencysupported by Instituto de Salud CarlosⅢ,Infrastructure of Precision Medicine associated with Science and Technology(IMPaCT)of the Strategic Action in Health(iDATA-MP)。
文摘Endochondral ossification is a physiological process involving a sequential formation of cartilage and bone tissues.Classically,cartilage and bone formation have been considered independent processes at cellular level.However,the recently described multiple cell differentiation dynamics suggest that some bone cells are indeed the progeny of cartilage cells,or chondrocyte-derived osteoblasts.We hypothesized that the cartilage-to-bone phenotype transition is triggered by specific molecular events.First,the process was assessed in mouse bone tissue,and then,it was mimicked using in vivo cell implantation and in vitro serial differentiation protocols.Data indicates that cartilage cells transition to bone cell phenotype during postnatal physiological bone formation.This process can be reproduced using cartilage precursor cells coupled to specific implantation procedures or differentiation protocols.Gene expression profiling reveals that NOTCH,BMP and MAPK signaling pathways are relevant at the phenotype-switch,while the transcription factors Mesp1,Alx1,Grhl3 and Hmx3 are the feasible driver genes for chondrocyte-derived osteoblasts formation.Altogether,this report shows that endochondral ossification can be modeled using primary cell cultures and data indicate that this process is regulated by specific molecular events,previously described at skeleton morphogenesis during embryo development,and from now on also linkable to postnatal bone development and regeneration processes.
文摘Today,environmental studies based on satellite imagery are known as making valuable contributions to the dynamics and spatial prediction of sensitive or complex ecosystems such as wide protected areas and represent sustainable decision tools.The Pendjari and W Transboundary Reserves which constitute biodiversity reservoirs,habitats for wildlife conservation lack substantial investigations on the vegetation dynamics.Despite the protection measures they benefit from,these reserves remain dependent on climatic hazards that can influence their stability.The present study is innovative since it applied remote sensing techniques combinedwith climate records fromthe last thirty years to analyze the past dynamics of land use and climate changes to predict the future trends of the vegetation cover of the two national parks in Benin,as well as their peripheries.The methodology used remote sensing and Geographic Information System(GIS)techniques that allowed the supervised classification of Landsat images from 1985,2000 and 2015.Climatic data were combined in R software to identify the break periods for climatic parameters.Finally,the predictive vegetation cover for the year 2030 was made by combining vegetation and climatic data in the“Land Change Modeler”extension.Results show ten land use and land cover classes which are the agglomerations,mosaics of fields and fallows,water bodies,dense forests,gallery forests,clear forests and wooded savannahs,swamp forests and shrubby wooded savannahs,saxicolous savannahs and bare ground.The natural vegetation decreased from 90.85%in 1985 to 83.54% in 2000 then to 79.56% in 2015,representing a decline of 11.39%over a study period of 30 years.The analysis of the climatic curves revealed the presence of a break,meaning drought frequencies.Thepredictivemodeling showed that land use units projected up to the year 2030 are consistent with past trends,but with the continued expansion of fields and fallows(2%)instead of the natural vegetation.This study not only provides good insights useful in the sustainable management of the Biosphere Reserves but will also motivate many other researches towards such ecosystems.
基金supported by the National Natural Science Foundation of China under the grants No.40233028 and No.40075017.
文摘Wavelet analyses are applied to the Pacific Decadal Oscillation index and North Pacific index for the period 1900-2000, which identifies two dominant interdecadal components, the bidecadal (15-25-yr) and pentadecadal (50 70-yr) modes. Joint propagating patterns of sea surface temperature (SST) and sea level pressure (SLP) anomalies in the North Pacific for the two modes are revealed by using the techniques of multi-channel singular spectrum analysis (MSSA) and linear regression analysis with the global sea surface temperature (GISST) data and the northern hemispheric SLP data for the common period 1903 1998. Significant differences in spatio-temporal structures are found between the two modes. For the bidecadal mode, SST anomalies originating from the Gulf of Alaska appear to slowly spread southwestward, inducing a reversal of early SST anomalies in the central North Pacific. Due to further westward spreading, the SST variation of the central North Pacific leads that of the Kuroshio-Oyashio Extension (KOE) region by approximately 4 to 5 years. Concomitantly, SLP anomalies spread over most parts of the North Pacific during the mature phase and then change into an NPO(North Pacific Oscillation)-like pattern during the transition phase. For the pentadecadal mode, SST anomalies develop in the southeast tropical Pacific and propagate along the North American coast to the mid-latitudes; meanwhile, SST anomalies with the same polarity in the western tropical Pacific expand northward to Kuroshio and its extension region; both merge into the central North Pacific reversing the sign of early SST anomalies there. Accompanying SLP anomalies are characterized by an NPO-like pattern during the mature phase while they are dominant over the North Pacific during the transitional phase. The bidecadal and pentadecadal modes have different propagating patterns, suggesting that the two interdecadal modes may arise from different physical mechanisms.
基金supported by the National Research Foundation of Korea funded by the Korean Government through the Ministry of Science and ICT under Grant NRF-2020R1F1A1060659 and in part by the 2020 Faculty Research Fund of Sejong University。
文摘Emotion recognition from speech data is an active and emerging area of research that plays an important role in numerous applications,such as robotics,virtual reality,behavior assessments,and emergency call centers.Recently,researchers have developed many techniques in this field in order to ensure an improvement in the accuracy by utilizing several deep learning approaches,but the recognition rate is still not convincing.Our main aim is to develop a new technique that increases the recognition rate with reasonable cost computations.In this paper,we suggested a new technique,which is a one-dimensional dilated convolutional neural network(1D-DCNN)for speech emotion recognition(SER)that utilizes the hierarchical features learning blocks(HFLBs)with a bi-directional gated recurrent unit(BiGRU).We designed a one-dimensional CNN network to enhance the speech signals,which uses a spectral analysis,and to extract the hidden patterns from the speech signals that are fed into a stacked one-dimensional dilated network that are called HFLBs.Each HFLB contains one dilated convolution layer(DCL),one batch normalization(BN),and one leaky_relu(Relu)layer in order to extract the emotional features using a hieratical correlation strategy.Furthermore,the learned emotional features are feed into a BiGRU in order to adjust the global weights and to recognize the temporal cues.The final state of the deep BiGRU is passed from a softmax classifier in order to produce the probabilities of the emotions.The proposed model was evaluated over three benchmarked datasets that included the IEMOCAP,EMO-DB,and RAVDESS,which achieved 72.75%,91.14%,and 78.01%accuracy,respectively.
基金supported by Chinese NSFC (Grant Nos.40830106 and 40676010)the Ministry of Science and Technology of China (National Key Program for Developing Basic Science,Grant No. 2007CB411803)
文摘Based on the NCEP (National Centers for Environmental Prediction) data,the relationship between the Sea Surface Temperature Anomalies (SSTAs) in the North Pacific and the atmospheric circulation anomalies in January 2008 is analyzed in this study.The SSTA mode most correlated with the Geopotential Height anomalies (GHAs) in January 2008 in the North Pacific exhibited a basin-wide horseshoe pattern with a warm center in November 2007.This persistent SSTA pattern would induce positive GHAs in the Aleutian Low area and East Asia and the northward extension of the West Pacific Subtropical High in January 2008 by maximum diabatic heating in the atmosphere over the Kuroshio Oyashio Extension (KOE) area,leading to the occurence of the circumpolar trough-ridge wave train anomaly in January 2008.
文摘Background The market for new drugs and procedures is substantial, and companies will continue to earmark major sums for the development of new drugs for many years to come. Access to the most up-to-date knowledge is therefore essential for the pharmaceutical companies in the competitive race to develop new proprietary drugs. In recent years, the pharmaceutical industry continuously increased their outsourcing strategy
文摘Aim: The present project is to seek the possible electrical stimulation parameter by which wind-up of withdrawal reflex of rats and set up a appropriate animal model for recording the withdrawal reflex of wind-up phenomenon. Meanwhile, a parallel comparison will be made between the recording of withdrawal reflex and dorsal horn (DH) neuron responses in order to investigate the possible correlation associated with sensory and motor interaction of pain information via simultaneous recording. On the other hand, another comparison
文摘This study is the first to evaluate the phytochemical content and biological properties of Tunisian T.platyphyllos Scop.A total of 23 compounds of essential oils were identified by gas chromatography-mass spectrometry(GC-MS)analysis of bracts and fruit extracts.The results show that oxygenated monoterpenes were the dominant class of essential oils.The phenolic composition was investigated by matrix-assisted laser desorption/ionizationtime of flight(MALDI-TOF).The analysis showed that the chemical profiles of the ethanolic extracts of bracts and fruits are substantially similar.The highest polyphenol content was found in the ethanolic extracts of the fruits(7.65 mg gallic acid equivalents(GAE).g−1 on dry weight(DW).As for the antioxidant capacity,it was recorded in the essential oils of the fruits(IC_(50)=0.91 mg.mL^(−1)).The results obtained showed that the antioxidant activity of the fruit essential oil was higher than that of the ethanol extract.The fruit essential oil was also found to have the highest reducing power(IC_(50)=0.67 mg.mL^(−1)).In terms of iron-chelating power,fruit essential oil has the highest chelating power(IC_(50)=2.03 mg.mL^(−1)).Compared to the ethanolic extract,the essential oil had the maximum antioxidant capacity.The enzymatic activity of acetylcholinesterase(AChE)inhibition of the essential oil from T.platyphyllos bracts had the most potent inhibitory effect(IC_(50)=0.77 mg.mL^(−1)),followed by the essential oil from the fruits(IC_(50)=0.95 mg.mL^(−1)).The results suggest that T.platyphyllos can be used as a potential source of naturally occurring bioactive compounds and antioxidants.
基金The authors acknowledge funding supported by Campus France as part of the Scientific Stay at High Level received by AK and supported by CRITTBois and LERMAB of University of Lorraine,Epinal,France.
文摘Salvia microphylla and Teucrium polium are medicinal and aromatic plants with ethnobotanical uses.The present study was conducted to investigate the chemical composition of Salvia microphylla and Teucrium polium essential oils,the secondary metabolites,and the biological activities of their infusion and methanolic(MeOH)extracts.Essential oils were extracted by hydrodistillation from shoots Salvia microphylla and Teucrium polium.Phenolic content,antioxidant and antimicrobial activities were determined.Gas chromatography-mass spectrometry(GCMS)results showed the presence of significant qualitative and quantitative variations for the composition of the both essential oils(EO).Salvia microphylla EO were most complex and present 70 compounds with the major components wereβ-caryophyllene(13.32%),1,8 cineole(11.25%),Cis p-Menthane-3-one(10.74%),andβ-Selinenol(9.71%).Where in the Teucrium polium EO,45 compounds were identified with the important components areβ-cadinene(10%),β-citronellol(8.5%),Carvacrol(7.63%),and Eugenol(7.15%).Obtained results showed that both plant are very rich in secondary metabolites.Extracts isolated from Salvia microphylla presented the highest contents in the phenolic compound than extracted from Teucrium polium.The antioxidant activity data demonstrated that all extracts showed strong antioxidant and radical scavenging activities.Essential oil and methanol extracts presented a potential for antimicrobial activities against all tested microorganisms.The obtained results highlight the potential use of Salvia microphylla and Teucrium polium as possible natural antioxidant substances and sources of bioactive molecules.
文摘Melioidosis, an infection caused by Gram-negative Burkholderia pseudomallei (Bp), has high clinical recurrence and mortality rates associated with pneumonia and sepsis. With the limitations in current therapeutic options and the lack of available human vaccines, development of novel countermeasures against Bp infection is vital. In this study, we evaluated the efficacy of an aminoalkyl glucosaminide 4-phosphate (AGP), a synthetic toll like receptor 4 agonist (CRX-527), in conferring protection against melioidosis in a murine model. Survival data showed 66% of mice treated with AGP prior to lethal intranasal Bp challenge survived and presented no signs of illness over a 3 months period. In contrast, all control mice succumbed to infection within 4 days. Kinetic study on organ bacterial burden demonstrated mice treated with AGP had dramatically reduced bacterial loads in both the lungs and spleens as compared to control mice. Notably, all but one AGP-treated mouse had no Bp growth in the blood as compared to overwhelming bacteraemia found in all control mice. The protective effect of CRX-527 was associated with a transient increase in pulmonary cytokine/ chemokine levels, which boosted the host’s innate immunity. This enabled rapid clearance of the pulmonary and systemic bacterial burden and prevented the development of sepsis. This study demonstrated the potential use of TLR4 agonist as a prophylactic immunotherapy in preventing melioidosis.
基金fully funded by Temasek Lifesciences Laboratory Ltd.
文摘Dear Editor,Previous studies had described the adaptation of enterovirus 71(EV-A71)strains that enabled entry and viral replication in Chinese Hamster Ovary(CHO)cell line(Zaini and McMinn 2012;Zaini et al.2012).These adapted strains derived from serial passage of a clinical isolate in CHO cells exhibited an amino acid substitution at VP2149,which enhanced viral replication by 100*1000-fold compared to the clinical isolate.The VP2149 mutation was claimed responsible for adaptation to CHO-K1 cells without performing detailed molecular analyses to support these claims.In this study,we evaluate various VP1 and VP2 mutations in two CHO-adapted EV-A71 strains derived in our lab to assess their contribution to the phenotype of CHO cell adaptation.
文摘Drought and salt stress are two major environmental constraints that limit the productivity of agriculture crops worldwide. WRKY transcription factors are the plant-specific transcription factors that regulate several developmental events and stress responses in plants. The WRKY domain is defined by a 60-amino acid conserved sequence named WRKYGQK at N-terminal and a Zinc Finger-like motif at the C-terminal. WRKY genes are known to respond several stresses which may act as negative or positive regulators. The function of most of the WRKY transcription factors from non-model plants remains poorly understood. This investigation shows the expression levels of eight WRKY transcription factor genes from horsegram plant under drought and salt stress conditions. The increase in mRNA transcript levels of WRKY transcription factor genes was found to be high in drought stressed plants compared to salt-stressed plants. The levels of MDA which indicates the lipid peroxidation were less in drought stress. More ROS is produced in salt stress conditions compared to drought. The results show that the expression of WRKY transcription factors in drought stress conditions is reducing the adverse effect of stress on plants. These results also suggest that, during abiotic stress conditions such as drought and salt stress, WRKY transcription factors are regulated at the transcription level.
文摘Antigen interaction with specific IgE bound to the high-affinity Fc receptor for IgE, constitutively expressed on the cell-surface of mast cells, generates signals that cause a shift in the resting state equilibrium of phosphorylation and dephosphorylation events that serves to maintain homeostasis. The outcome of this activated state is the release of a wide array of preformed and newly synthesized pro-inflammatory mediators. During the past few years, the existence of a negative feedback loop initiated upon FcεRI engagement has also been envisaged. This negative signal involves the coordinated action of adaptors, phosphatases and ubiquitin ligases that limits the intensity and duration of positive signals, thus modulating mast cell functions. Relevant to this, others and we have demonstrated that Cbl family proteins control the amplitude of FcεRI-generated signals by specific ubiquitin modification of activated receptor subunits and associated protein tyrosine kinases. In this article, we review advances in our understanding of the molecular mechanisms through which Cbl proteins regulate FcεRI expression and signaling.
基金This research was initiated in a project with，国家高技术研究发展计划(863计划)，日本科研项目，国家高技术研究发展计划(863计划)
文摘Pen-based user interfaces which leverage the affordances of the pen provide userswith more flexibility and natural interaction. However, it is difficult to construct usable pen-baseduser interfaces because of the lack of support for their development. Toolkit-level support has beenexploited to solve this problem, but this approach makes it hard to gain platform independence,easy maintenance and easy extension. In this paper a context-aware infrastructure is created,called WEAVER, to provide pen interaction services for both novel pen-based applications andlegacy GUI-based applications. WEAVER aims to support the pen as another standard interactivedevice along with the keyboard and mouse and present a high-level access interface to pen input.It employs application context to tailor its service to different applications. By modeling theapplication context and registering the relevant action adapters, WEAVER can offer services,such as gesture recognition, continuous handwriting and other fundamental ink manipulations, toappropriate applications. One of the distinct features of WEAVER is that off-the-shelf GUI-basedsoftware packages can be easily enhanced with pen interaction without modifying the existing code.In this paper, the architecture and components of WEAVER are described. In addition, examplesand feedbacks of its use are presented.
基金funded by the National Research Foundation of Korea(NRF)grant funded by the Korea government(MSIT)(No.RS-2024-00338686 and No.2410002523)。
文摘Concurrent perception of static and dynamic tactile stimuli is essential for natural haptic feedback and precise manipulation.However,most artificial tactile sensors remain limited to either static,dynamic,or temperature sensing due to reliance on specific mechanisms for each modality.Integrating these capabilities in a single artificial receptor is still challenging,particularly when spike-based signals are used as the primary encoding strategies.Here,we present an artificial sensory receptor that decodes spike patterns to perceive static,dynamic,and thermal stimuli simultaneously.By applying a pulsed DC bias across a mixed ion-electron conductor,the device continuously produces encoded spike patterns without additional signal conversion circuitry.Furthermore,the engineered combination of stretchable electrodes and the mixed conductor allows decoupling of mechanical and thermal responses,eliminating signal interference.This simple structure enables reliable,real-time recognition of multiple tactile inputs,including pressure,strain,temperature,and vibration,through a single channel.
文摘Green food in China refers to a wide array of primary and processed agricultural products that are safe,nutritious and of high quality for human consumption.Green food has been certified and produced following the principle of sustainability since the 1990 s,making historic achievements in providing quality food,protecting the environment,increasing farmer income,and nurturing agricultural brands over the past 30 years in China.Today,the green food industry enters a steady-growth stage in terms of cultivation area,product number and sales.This article summarizes the history of the development of green food in China and current achievements,analyze major challenges that may hamper further development of the industry,and propose strategies to address these challenges,i.e.,optimization of the food supply chain,deep food processing,and utilization of food wastes.
基金This research was supported by Featured microbial resources and diversity investigation in Southwest Karst area(2014FY120100).The authors extend their sincere appreciations to the Deanship of Scientific Research at King Saud University for its funding this Prolific Research Group(PRG-1436-09).Kevin D.Hyde thanks the Chinese Academy of Sciences,project number 2013T2S0030,for the award of Visiting Professorship for Senior International Scientists at Kunming Institute of Botany.B.D.Shenoy acknowledges the funding to visit Mae Fah Luang University,Chiang Rai under Indo-Thailand Bilateral Programme(THAI-1205).Y.P.Xiao and T.C.Wen are grateful to The National Natural Science Foundation of China(No.31460012&No.31200016).Shi-Ke Huang and J.C.Kang are grateful to the Agricultural Science and Technology Foundation of Guizhou Province(Nos.NY[2013]3042),the International Collaboration Plan of Guizhou Province(No.G[2012]7006)and the Innovation Team Construction for Science And Technology of Guizhou Province(No.[2012]4007)from the Science and Technology Department of Guizhou Province,China.
文摘Sordariomycetes is one of the largest classes of Ascomycota and is characterised by perithecial ascomata and inoperculate unitunicate asci.The class includes many important plant pathogens,as well as endophytes,saprobes,epiphytes,and fungicolous,lichenized or lichenicolous taxa.The class includes freshwater,marine and terrestrial taxa and has a worldwide distribution.This paper provides an updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the class.Based on phylogeny and morphology we introduced three subclasses;Diaporthomycetidae,Lulworthiomycetidae and Meliolomycetidae and five orders;Amplistromatales,Annulatascales,Falcocladiales,Jobellisiales and Togniniales.The outline is based on literature to the end of 2014 and the backbone tree published in this paper.Notes for 397 taxa with information,such as new family and genera novelties,novel molecular data published since the Outline of Ascomycota 2009,and new links between sexual and asexual genera and thus synonymies,are provided.The Sordariomycetes now comprises six subclasses,28 orders,90 families and 1344 genera.In addition a list of 829 genera with uncertain placement in Sordariomycetesis also provided.
基金the featured microbial resources and diversity investigation in Southwest Karst area(2014FY120100).The Biodiversity and Training Program(BRT R_251006,BRT R_351004,BRT_R352015)+3 种基金National Center for Genetic Engineering and Biotechnology(BIOTEC)Khlong Luang,Pathum Thani 12120,ThailandNational Natural Science Foundation of China(NSFC,No.30870009&31460011)the International Collaboration Plan of Guizhou Province(No.G[2012]7006)Ka-Lai Pang thanks the Ministry of Science and Technology,Taiwan(grant no.101-2621-B-019-001-MY3)for financial support.
文摘Sordariomycetes is one of the largest classes of Ascomycota that comprises a highly diverse range of fungi characterized mainly by perithecial ascomata and inoperculate unitunicate asci.The class includes many important plant pathogens,as well as endophytes,saprobes,epiphytes,coprophilous and fungicolous,lichenized or lichenicolous taxa.They occur in terrestrial,freshwater and marine habitats worldwide.This paper reviews the 107 families of the class Sordariomycetes and provides a modified backbone tree based on phylogenetic analysis of four combined loci,with a maximum five representative taxa from each family,where available.This paper brings together for the first time,since Barrs’1990 Prodromus,descriptions,notes on the history,and plates or illustrations of type or representative taxa of each family,a list of accepted genera,including asexual genera and a key to these taxa of Sordariomycetes.Delineation of taxa is supported where possible by molecular data.The outline is based on literature to the end of 2015 and the Sordariomycetes now comprises six subclasses,32 orders,105 families and 1331 genera.The family Obryzaceae and Pleurotremataceae are excluded from the class.
基金financially supported by the Programa de Desarrollo de las Ciencias Bsicas (PEDECIBA) Uruguaythe Comision Sectorial de Investigación Científica (CSIC) de la Universidad de la República (Udela R) Uruguay (Grant No. CSIC-C635 348)the Agencia Nacional de Investigación e Innovación (ANII) Uruguay
文摘In trypanosomatids, the RNA polymerase I （RNAPI）-dependent promoters controlling the ribosomal RNA （rRNA） genes have been well identified. Although the RNAPI transcription machinery recognizes the DNA conformation instead of the DNA sequence of promoters, no con- formational study has been reported for these promoters. Here we present the in silico analysis of the intrinsic DNA curvature of the rRNA gene core promoters in Trypanosoma brucei, Trypanosoma cruzi, and Leiskmania major. We found that, in spite of the absence of sequence conservation, these promoters hold conformational properties similar to other eukaryotic rRNA promoters. Our results also indicated that the intrinsic DNA curvature pattern is conserved within the Leishmania genus and also among strains of T. cruzi and T. brucei. Furthermore, we analyzed the impact of point mutations on the intrinsic curvature and their impact on the promoter activity. Furthermore, we found that the core promoters of protein-coding genes transcribed by RNAPI in T. brucei show the same conserved conformational characteristics. Overall, our results indicate that DNA intrinsic curvature of the rRNA gene core promoters is conserved in these ancient eukaryotes and such con- served curvature might be a requirement of RNAPI machinery for transcription of not only rRNA genes but also protein-coding genes.
基金The research was supported by 1)Chinese Academy of Sciences(Project No.KSCX2-EW-Z-9).K.Tanaka would like to thank the Japan Society for the Promotion of Science(JSPS,25440199)for financial support.This project was supported by the Distinguished Scientist Fellowship Program(DSFP),King Saud University,Saudi Arabia.This project was also supported by NSTIP strategic technologies program,number(12-BIO2840-02)in the Kingdom of Saudi Arabia.B.Buyck and V.Hofstetter acknowledge the ATM“Emergences”(Dirs.P.Janvier&S.Peigné)from the National museum of natural history,Paris,for financial support related to sequencing as well as travel expenses in Madagascar.Overseas travel of B.Buyck was funded by the ATM research program“Etat et structure phylogénétique de la biodiversitéactuelle et fossile”of the Paris’Museum.(director Ph.Janvier)S.Adamčík acknowledges funding by his national Slovak Project VEGA 02/0075/14.B.D.Shenoy acknowledges funding to visit Mae Fah Luang University,Chiang Rai under Indo-Thailand bilateral programme(THAI-1205).The Lewis family is warmly thanked for their generous hospitality,offering excellent and very agreeable working and field condition.K.Wisitrassameewong and A.Verbeken were financially supported by the joint doctorate program of the“Bijzonder Onderzoeksfonds Gent University”(BOF),Gent University.This research was also financial supported by The Biodiversity and Training Program(BRT R 149009)and Interaction Laboratory(BMIT),National Center for Genetic Engineering and Biotechnology(BIOTEC)Khlong Luang,Pathum Thani 12120,Thailand.Thanks are extended to the Thailand Research Fund grant(BRG 5580009)under the research grant entitled“Taxonomy,Phylogeny and Biochemistry of Thai Basidiomycetes”for financial support.J.Chen and R.L.Zhao would like to thank the National Natural Science Foundation of China(Project ID:31000013,31360014 and 31470152).Uwe Braun,Walter Jaklitsch,Tom May,Marc Stadler and Jo Taylor,are thanks for commenting on some parts of the manuscript.Shaun Pennycook is thanked for checking and suggesting corrections to most of the Latin names.
文摘This paper is a compilation of notes on 110 fungal taxa,including one new family,10 new genera,and 76 new species,representing a wide taxonomic and geographic range.The new family,Paradictyoarthriniaceae is introduced based on its distinct lineage in Dothideomycetes and its unique morphology.The family is sister to Biatriosporaceae and Roussoellaceae.The new genera are Allophaeosphaeria(Phaeosphaeriaceae),Amphibambusa(Amphisphaeriaceae),Brunneomycosphaerella(Capnodiales genera incertae cedis),Chaetocapnodium(Capnodiaceae),Flammeascoma(Anteagloniaceae),Multiseptospora(Pleosporales genera incertae cedis),Neogaeumannomyces(Magnaporthaceae),Palmiascoma(Bambusicolaceae),Paralecia(Squamarinaceae)and Sarimanas(Melanommataceae).The newly described species are the Ascomycota Aliquandostipite manochii,Allophaeosphaeria dactylidis,A.muriformia,Alternaria cesenica,Amphibambusa bambusicola,Amphisphaeria sorbi,Annulohypoxylon thailandicum,Atrotorquata spartii,Brunneomycosphaerella laburni,Byssosphaeria musae,Camarosporium aborescentis,C.aureum,C.frutexensis,Chaetocapnodium siamensis,Chaetothyrium agathis,Colletotrichum sedi,Conicomyces pseudotransvaalensis,Cytospora berberidis,C.sibiraeae,Diaporthe thunbergiicola,Diatrype palmicola,Dictyosporium aquaticum,D.meiosporum,D.thailandicum,Didymella cirsii,Dinemasporium nelloi,Flammeascoma bambusae,Kalmusia italica,K.spartii,Keissleriella sparticola,Lauriomyces synnematicus,Leptosphaeria ebuli,Lophiostoma pseudodictyosporium,L.ravennicum,Lophiotrema eburnoides,Montagnula graminicola,Multiseptospora thailandica,Myrothecium macrosporum,Natantispora unipolaris,Neogaeumannomyces bambusicola,Neosetophoma clematidis,N.italica,Oxydothis atypica,Palmiascoma gregariascomum,Paraconiothyrium nelloi,P.thysanolaenae,Paradictyoarthrinium tectonicola,Paralecia pratorum,Paraphaeosphaeria spartii,Pestalotiopsis digitalis,P.dracontomelon,P.italiana,Phaeoisaria pseudoclematidis,Phragmocapnias philippinensis,Pseudocamarosporium cotinae,Pseudocercospora tamarindi,Pseudotrichia rubriostiolata,P.thailandica,Psiloglonium multiseptatum,Saagaromyces mangrovei,Sarimanas pseudofluviatile,S.shirakamiense,Tothia spartii,Trichomerium siamensis,Wojnowicia dactylidicola,W.dactylidis and W.lonicerae.The Basidiomycota Agaricus flavicentrus,A.hanthanaensis,A.parvibicolor,A.sodalis,Cantharellus luteostipitatus,Lactarius atrobrunneus,L.politus,Phylloporia dependens and Russula cortinarioides are also introduced.Epitypifications or reference specimens are designated for Hapalocystis berkeleyi,Meliola tamarindi,Pallidocercospora acaciigena,Phaeosphaeria musae,Plenodomus agnitus,Psiloglonium colihuae,P.sasicola and Zasmidium musae while notes and/or new sequence data are provided for Annulohypoxylon leptascum,A.nitens,A.stygium,Biscogniauxia marginata,Fasciatispora nypae,Hypoxylon fendleri,H.monticulosum,Leptosphaeria doliolum,Microsphaeropsis olivacea,Neomicrothyrium,Paraleptosphaeria nitschkei,Phoma medicaginis and Saccotheciaceae.A full description of each species is provided with light micrographs(or drawings).Molecular data is provided for 90 taxa and used to generate phylogenetic trees to establish a natural classification for species.
