Journal of Genetics and Genomics(JGG),launched in 1974,celebrates its 50th birthday in 2023.With continuous support from our authors,reviewers,readers,and the editorial board,JGG has made remarkable progress in the pa...Journal of Genetics and Genomics(JGG),launched in 1974,celebrates its 50th birthday in 2023.With continuous support from our authors,reviewers,readers,and the editorial board,JGG has made remarkable progress in the past year by publishing 122 papers covering major disciplines in life sciences and medical genetics with exciting discoveries.It is worthwhile to note that we have recruited 66 young talents to join JGG as junior editors,resulting in significant improvement in manuscript evaluation and journal promotion.Here,we summarize major progresses reported in JGG in 2023 fromaneditorial view.展开更多
Powdery mildew negatively impacts wheat yield and quality.Emmer wheat(Triticum dicoccum),an ancestral species of common wheat,is a gene donor for wheat improvement.Cultivated emmer accession H1-707 exhibited all-stage...Powdery mildew negatively impacts wheat yield and quality.Emmer wheat(Triticum dicoccum),an ancestral species of common wheat,is a gene donor for wheat improvement.Cultivated emmer accession H1-707 exhibited all-stage resistance to powdery mildew over consecutive years.Genetic analysis of H1-707 at the seedling stage revealed a dominant monogenic inheritance pattern,and the underlying gene was designated Pm71.By employing bulked segregant exome sequencing(BSE-Seq)and using 2000 F2:3 families,Pm71 was fine mapped to a 336-kb interval on chromosome arm 6AS by referencing to the durum cv.Svevo RefSeq 1.0.Collinearity analysis revealed high homology in the candidate interval between Svevo and six Triticum species.Among six high-confidence genes annotated within this interval,TRITD6Av1G005050 encoding a GDSL esterase/lipase was identified as a key candidate for Pm71.展开更多
Branching is a critical aspect of plant architecture that significantly impacts the yield and adaptability of staple cereal crops like rice and wheat.Cereal crops develop tillers during the vegetative stage and panicl...Branching is a critical aspect of plant architecture that significantly impacts the yield and adaptability of staple cereal crops like rice and wheat.Cereal crops develop tillers during the vegetative stage and panicle or spike branches during the reproductive stage,respectively,both of which are significantly impacted by hormones and genetic factors.Tillering and panicle branching are closely interconnected and exhibit high environmental plasticity.Here,we summarize the recent progress in genetic,hormonal,and environmental factors regulation in the branching of rice and wheat.This review not only provides a comprehensive overview of the current knowledge on branching mechanisms in rice and wheat,but also explores the prospects for future research aimed at optimizing crop architecture for enhanced productivity.展开更多
Originally extracted from willow bark,salicylic acid(SA)provided the structural basis for the synthesis of acetylsalicylic acid(aspirin)in 1897,a milestone that exemplifies the far-reaching biomedical relevance of pla...Originally extracted from willow bark,salicylic acid(SA)provided the structural basis for the synthesis of acetylsalicylic acid(aspirin)in 1897,a milestone that exemplifies the far-reaching biomedical relevance of plant-derived metabolites(Desborough and Keeling,2017).In plants,SA functions as a pleiotropic phytohormone that orchestrates immune reprogramming,serving as a central mediator of both local defense responses and systemic acquired resistance(SAR).展开更多
Reactive oxygen species(ROS)and nitric oxide(NO)are two critical classes of signaling molecules that regulate plant development and stress responses.The intracellular level of S-nitrosoglutathione(GSNO),a major bioact...Reactive oxygen species(ROS)and nitric oxide(NO)are two critical classes of signaling molecules that regulate plant development and stress responses.The intracellular level of S-nitrosoglutathione(GSNO),a major bioactive NO species,is regulated by the highly conserved GSNO reductase(GSNOR).However,the molecular mechanisms underlying ROS-mediated regulation of GSNOR remain largely unclear.Here,we show that H_(2)O_(2)negatively regulates the activity of GSNOR1 during ovule development in Arabidopsis.S-sulfenylation of GSNOR1 at Cys-284 inhibits its enzymatic activity.A GSNOR1C284S mutation causes a reduction of the total SNO level in pistils,thereby disrupting NO homeostasis and eventually leading to defective ovule development.These findings illustrate a unique mechanism by which ROS regulates ovule development through S-sulfenylation-mediated inhibition of the GSNOR activity,thereby establishing a molecular link between ROS and NO signaling pathways in reproductive development.展开更多
In grapevine,previous studies have suggested that,gibberellin(GA)inhibits bud break before dormancy release while enhanced after dormancy release;the capacity of GA accumulation shows a trend of first inhibition and t...In grapevine,previous studies have suggested that,gibberellin(GA)inhibits bud break before dormancy release while enhanced after dormancy release;the capacity of GA accumulation shows a trend of first inhibition and then upregulation.However,the regulatory mechanism of GA metabolism genes expression is as yet unclear during the process of dormancy release.In this study,we further validated the effect of GA3 and hydrogen cyanamide(HC)on bud break of‘Red Globe’grape,confirmed inhibition and promotion effect,respectively.Restricted GA biosynthetic genes'expression and enhanced GA catabolic gene's expression were observed in the early stage after HC treatment,while opposite expression trend showed in the late stage.VvSVP1,a MADS-box transcription factor gene,was downregulated in the late stage,which might play an important role in regulating GA metabolism genes'expression.It was shown that,VvSVP1 could bind to the promoter regions of GA biosynthetic gene VvGA20ox6 and catabolic gene VvGA2ox3,negatively and positively regulated the corresponding genes'expression,respectively;the contents of GAs related to GA20ox were significantly reduced in the grape callus overexpressed VvSVP1,while the ratio of GAs related to GA2ox were significantly increased.Taken together,VvSVP1 can regulate the endogenous GAs level by manipulating the expression of GA metabolism genes before dormant bud break induced by HC.Our findings may provide some new theoretical insights for the study of bud dormancy regulation in the perennial woody fruit trees.展开更多
Sulfate transporters(SULTRs)facilitate sulfate uptake and transport in plants.In plants,SULTRs can be classified into four distinct functional groups,among which SULTR3 members are the least characterized,and their fu...Sulfate transporters(SULTRs)facilitate sulfate uptake and transport in plants.In plants,SULTRs can be classified into four distinct functional groups,among which SULTR3 members are the least characterized,and their functions have not yet been confirmed,especially for SULTR3 in rice.In this study,we analyzed the expression patterns,subcellular localization,and inorganic phosphate(Pi)transporter activity of SULTR3 proteins in yeast.Except for OsSULTR3.4,which localized to the plasma membrane,other OsSULTR3 members were localized to the endoplasmic reticulum(ER)membrane in rice protoplast cells.展开更多
Vegetation response to the combined effects of human and nature has raised extensive controversy.The relative contributions of ecological restoration and multiple climate factors on vegetation variation remain unclear...Vegetation response to the combined effects of human and nature has raised extensive controversy.The relative contributions of ecological restoration and multiple climate factors on vegetation variation remain unclear.Combining spatial and temporal changes in fractional vegetation cover(FVC)and net primary productivity(NPP)from 2000 to 2021,we assessed the trend of these two indicators and quantified the impact of ecological restoration and climate factors on vegetation variation using partial correlation and residual analysis.The results indicated that:(1)From 2000 to 2021,vegetation restoration in the Taihang Mountain area was notably successful.FVC increased by 5.71%over 22 years with a change trend of 0.0018 per annum.The cumulative growth rate of NPP over the same period was 42.03%,corresponding to an average annual increase of 5.492 g(C)·m^(-2)·a^(-1).(2)During the 22-year period,the contribution rates of ecological engineering to FVC and NPP were 65.13%and 64.33%,respectively.Ecological restoration was the dominant factor affecting vegetation change,and its impact was increasing in over 90%of the regional projects.The primary climate controlling factor of NPP was precipitation,while FVC responded synergistically to precipitation(primary)and temperature(secondary).Overall,the impact of precipitation on vegetation was 1.5 times that of temperature.(3)Among various ecological restoration types,grassland restoration contributed the most to vegetation change,followed by forest land restoration.This study offers valuable scientific insights that can guide the sustainability of vegetation ecology in semi-arid mountainous areas.展开更多
Nitrate(NO_(3)^(-))accumulation and transport processes in the thick vadose zone affect the evolution of the groundwater NO_(3)^(-)content in intensive agricultural regions.Agricultural land-use change(ALUC),typically...Nitrate(NO_(3)^(-))accumulation and transport processes in the thick vadose zone affect the evolution of the groundwater NO_(3)^(-)content in intensive agricultural regions.Agricultural land-use change(ALUC),typically accompanied by substantial alterations in nitrogen fertilizer application and irrigation practices,is an important influencing factor.This study evaluated the changes in NO_(3)^(-)accumulation and transport in the deep vadose zone(DVZ,below the root zone),and the groundwater NO_(3)^(-)content associated with ALUC from grain to vegetable fields in the North China Plain(NCP).The ALUC from grain to vegetable resulted in nitrate–nitrogen(NO_(3)^(-)-N)accumulation in DVZ increased by 235.5 kg ha^(-1)m^(-1)(163.2%)in the piedmont plain and 224.9 kg ha^(-1)m^(-1)(102.7%)in the central plain,respectively.This change accelerated downward transport velocity in the DVZ(from 0.81±0.47 to 0.89±0.55 m yr^(-1)in the piedmont plain,and from 0.24±0.12 to 0.92±0.12 m yr^(-1)in the central plain)and increased NO_(3)^(-)leaching fluxes.High transport velocity and leaching fluxes resulted in chemical N-fertilizer entering the aquifer in several areas in the piedmont plain.The impact of the agricultural activity intensity changes,accompanied by the ALUC,on groundwater quantity and quality should be considered in similar regions.展开更多
Crop productivity may be affected by soil salinization from brackish water irrigation.Plants host species-specific soil microorganisms that can enhance plant adaptability to salt stress.However,it is unclear whether t...Crop productivity may be affected by soil salinization from brackish water irrigation.Plants host species-specific soil microorganisms that can enhance plant adaptability to salt stress.However,it is unclear whether these specific microorganisms recruited under brackish water irrigation are related to microbial resistance,which has been proven to promote crop production.A field experiment was conducted using five local wheat varieties,each of which was exposed to brackish or fresh water irrigation for four years.Brackish water irrigation tended to increase wheat yield by 6.38%–19.40%,although the increase in yield under brackish water relative to fresh water irrigation varied with wheat variety.The compositions of the bacterial and fungal communities in the bulk soil and rhizosphere were measured,and the taxa enriched following brackish water irrigation were isolated to investigate microbial resistance.We found that the resistance of each wheat variety was determined by specifically recruited microbial taxa with relevant functions.The yield incremental rates were positively regulated by microbial resistance from the bulk soil and rhizosphere.Moreover,the resistance from the bulk soil and rhizosphere had similar effects,and microbial consortia containing both beneficial and harmful taxa determined microbial resistance.These results indicated that brackish water irrigation-induced recruitment of specific microbial taxa from either the bulk soil or the rhizosphere or both positively contributed to the yield incremental rate and provided a list of key taxa linked to the magnitude of yield variation caused by brackish water irrigation.展开更多
Chromosomal DNA double-strand breaks(DSBs)are often generated in the genome of all living organisms.To combat DNA damage,organisms have evolved several DSB repair mechanisms,with nonhomologous end-joining(NHEJ)and hom...Chromosomal DNA double-strand breaks(DSBs)are often generated in the genome of all living organisms.To combat DNA damage,organisms have evolved several DSB repair mechanisms,with nonhomologous end-joining(NHEJ)and homologous recombination(HR)being the two most prominent.Although two major pathways have been extensively studied in Arabidopsis,rice and other mammals,the exact functions and differences between the two DSB repair pathways in maize still remain less well understood.Here,we characterized mre11a and rad50,mutants of HR pathway patterns,which showed drastic degradation of the typically persistent embryo and endosperm during kernel development.Loss of MRE11 or RAD50 function led to chromosomal fragments and chromosomal bridges in anaphase.While we also reported that the NHEJ pathway patterns,KU70 and KU80 are associated with developmental growth and genome stability.ku70 and ku80 both displayed an obvious dwarf phenotype.Cytological analysis of the mutants revealed extensive chromosome fragmentation in metaphase and subsequent stages.Loss of KU70/80 function upregulated the expression of genes involved in cell cycle progression and nuclear division.These results provide insights into how NHEJ and HR are mechanistically executed during different plant developmental periods and highlight a competitive and complementary relationship between the NHEJ and HR pathways for DNA double-strand break repair in maize.展开更多
In the mammalian genome,most CpGs are methylated.However,CpGs within the CpG islands(CGIs)are largely unmethylated,which are important for gene expression regulation.The mechanism underlying the low methylation levels...In the mammalian genome,most CpGs are methylated.However,CpGs within the CpG islands(CGIs)are largely unmethylated,which are important for gene expression regulation.The mechanism underlying the low methylation levels at CGIs remains largely elusive.KDM2 proteins(KDM2A and KDM2B)are H3K36me2 demethylases known to bind specifically at CGIs.Here,we report that depletion of each or both KDM2 proteins,or mutation of all their JmjC domains that harbor the H3K36me2 demethylation activity,leads to an increase in DNA methylation at selective CGIs.The Kdm2a/2b double knockout shows a stronger increase in DNA methylation compared with the single mutant of Kdm2a or Kdm2b,indicating that KDM2A and KDM2B redundantly regulate DNA methylation at CGIs.In addition,the increase of CGI DNA methylation upon mutations of KDM2 proteins is associated with the chromatin environment.Our findings reveal that KDM2A and KDM2B function redundantly in regulating DNA methylation at a subset of CGIs in an H3K36me2 demethylation-dependent manner.展开更多
Powdery mildew is a serious disease caused by Blumeria graminis f.sp.tritici(Bgt)that critically threatens the yield and quality of wheat(Triticum aestivum L.).Using effective powdery mildew resistance genes is the op...Powdery mildew is a serious disease caused by Blumeria graminis f.sp.tritici(Bgt)that critically threatens the yield and quality of wheat(Triticum aestivum L.).Using effective powdery mildew resistance genes is the optimal method for controlling this disease.Against the background of high genetic homogeneity among the modern commercial cultivars that are mainly derived from conventional interbreeding,the resistance genes from wheat relatives have especially prominent advantages.Octoploid triticale,produced from common wheat and rye(Secale cereale L.)through distant hybridization,is a new synthetic species and valuable gene donor for wheat improvement.In this study,we developed the wheat-rye line YT5 through the hybridization of octaploid triticale and two wheat lines.YT5 was confirmed to be a 6RL ditelosomic addition and 1R(1B)substitution line using genomic in situ hybridization(GISH),multicolor fluorescence in situ hybridization(mc-FISH),multicolor GISH(mc-GISH)and molecular marker analysis.Genetic analysis showed that the powdery mildew resistance in YT5 was derived from the rye chromosome arm 6RL.After inoculation with different Bgt isolates at the seedling stage,YT5 had compound reaction patterns with both obvious spores and hypersensitivity,and it gradually became highly resistant until the adult-plant stage,thus showing a resistance response significantly different from the reported Pm genes from rye chromosome 6RL.YT5 also showed promising agronomic performance,so it is expected to be an elite resistance donor for wheat improvement.To promote the transfer of the chromosome arm 6RL of YT5 in marker-assisted selection(MAS)breeding,we selected and verified two 6RL-specific kompetitive allelespecific PCR(KASP)markers that can be applied to efficiently detect this chromosome arm in different wheat backgrounds.展开更多
A later heading date generally leads to higher grain yield in favorable ecological regions;however,grain yield reaches a limit as the heading date exceeds a certain threshold.Ghd7 is the first cloned major gene that r...A later heading date generally leads to higher grain yield in favorable ecological regions;however,grain yield reaches a limit as the heading date exceeds a certain threshold.Ghd7 is the first cloned major gene that regulates heading date,plant height and grain number.Here,we investigated the relationship between Ghd7 and florigen genes Hd3a and RFT1,to determine their roles in regulating heading date and grain number under different photoperiods.Our results revealed that under long-day(LD)conditions,Hd3a acts prior to RFT1 to promote heading while negatively regulating plant height and grain number.In contrast,Ghd7 positively regulates heading date,plant height,and grain number by inhibiting both Hd3a and RFT1.Under short-day(SD)conditions,the functions of Hd3a and RFT1 remain consistent with those under LD conditions,but Ghd7 does not inhibit their expression,resulting in a weaker phenotypic effect compared to Hd3a.Additionally,under both LD and SD conditions,increased Ghd7 expression enhances its inhibitory effect on Hd3a and RFT1,leading to later heading and increased grain number;however,once the heading date exceeds 94 d,grain number no longer increases.Moreover,the gn1a allele increased grain number by 16.5%to 42.5%,while combinations of the elite alleles from Ghd7,Hd3a,RFT1,and Gn1a significantly increased grain number by up to 240.9%.Therefore,we propose a new breeding strategy to optimize the heading date and grain number using the Ghd7Hd3aRFT1gn1a combination of Ghd7,Hd3a,RFT1,and Gn1a under LD conditions,and the Ghd7hd3aRFT1gn1a combination under SD conditions.This strategy improved the yield of the high-quality Northeast variety Kongyu 131(KY131)by 69.1%in Beijing and 93.7%in Hainan.This strategy will greatly improve the efficiency of north-to-south adaptation in rice,providing theoretical guidance for expanding the geographical adaptability of rice varieties.展开更多
Cancer is a global health problem and one of the leading causes of mortality.Immune checkpoint inhibitors have revolutionized the field of oncology,emerging as a powerful treatment strategy.A key pathway that has garn...Cancer is a global health problem and one of the leading causes of mortality.Immune checkpoint inhibitors have revolutionized the field of oncology,emerging as a powerful treatment strategy.A key pathway that has garnered considerable attention is programmed cell death-1(PD-1)/programmed cell death-ligand 1(PD-L1).The interaction between PD-L1 expressed on tumor cells and PD-1 reduces the innate immune response and thus compromises the capability of the body’s immune system.Furthermore,it controls the phenotype and functionality of innate and adaptive immune components.A range of monoclonal antibodies,including avelumab,atezolizumab,camrelizumab,dostarlimab,durvalumab,sinitilimab,toripalimab,and zimberelimab,have been developed for targeting the interaction between PD-1 and PD-L1.These agents can induce a broad spectrum of autoimmune-like complications that may affect any organ system.Recent studies have focused on the effect of various natural compounds that inhibit immune checkpoints.This could contribute to the existing arsenal of anticancer drugs.Several bioactive natural agents have been shown to affect the PD-1/PD-L1 signaling axis,promoting tumor cell apoptosis,influencing cell proliferation,and eventually leading to tumor cell death and inhibiting cancer progression.However,there is a substantial knowledge gap regarding the role of different natural compounds targeting PD-1 in the context of cancer.Hence,this review aims to provide a common connection between PD-1/PD-L1 blockade and the anticancer effects of distinct natural molecules.Moreover,the primary focus will be on the underlying mechanism of action as well as the clinical efficacy of bioactive molecules.Current challenges along with the scope of future research directions targeting PD-1/PD-L1 interactions through natural substances are also discussed.展开更多
The circadian clock is a highly hierarchical network of endogenous pacemakers that primarily maintains and directs oscillations through transcriptional and translational feedback loops,which modulates an approximately...The circadian clock is a highly hierarchical network of endogenous pacemakers that primarily maintains and directs oscillations through transcriptional and translational feedback loops,which modulates an approximately 24-h cycle of endocrine and metabolic rhythms within cells and tissues.While circadian clocks regulate metabolic processes and related physiology,emerging evidence indicates that metabolism and circadian rhythm are intimately intertwined.In this review,we highlight the concept of metabolites,including lipids and other polar metabolites generated from intestinal microbial metabolism and nutrient intake,as time cues that drive changes in circadian rhythms,which in turn influence metabolism and aging.Furthermore,we discuss the roles of functional metabolites as circadian cues,paving a new direction on potential intervention targets of circadian disruption,pathological aging,as well as metabolic diseases that are clinically important.展开更多
On top of genetic information,organisms have evolved complex and sophisticated epigenetic regulation to adjust gene expression in response to developmental and environmental signals.Key epigenetic mechanisms include D...On top of genetic information,organisms have evolved complex and sophisticated epigenetic regulation to adjust gene expression in response to developmental and environmental signals.Key epigenetic mechanisms include DNA methylation,histone modifications and variants,chromatin remodeling,and chemical modifications of RNAs.Epigenetic control of environmental responses is particularly important for plants,which are sessile and unable to move away from adverse environments.Besides enabling plants to rapidly respond to environmental stresses,some stress-induced epigenetic changes can be maintained,providing plants with a pre-adapted state to recurring stresses.Understanding these epigenetic mechanisms offers valuable insights for developing crop varieties with enhanced stress tolerance.Here,we focus on abiotic stresses and summarize recent progress in characterizing stress-induced epigenetic changes and their regulatory mechanisms and roles in plant abiotic stress resistance.展开更多
Epigenetics refers to the study of heritable changes in gene function that do not involve changes in the DNA sequence. Such effects on cellular and physiological phenotypic traits may result from external or environme...Epigenetics refers to the study of heritable changes in gene function that do not involve changes in the DNA sequence. Such effects on cellular and physiological phenotypic traits may result from external or environmental factors or be part of normal developmental program. In eukaryotes, DNA wraps on a histone octamer(two copies of H2A, H2B, H3 and H4) to form nucleosome, the fundamental unit of chromatin. The structure of chromatin is subjected to a dynamic regulation through multiple epigenetic mechanisms, including DNA methylation, histone posttranslational modifications(PTMs), chromatin remodeling and noncoding RNAs. As conserved regulatory mechanisms in gene expression, epigenetic mechanisms participate in almost all the important biological processes ranging from basal development to environmental response. Importantly, all of the major epigenetic mechanisms in mammalians also occur in plants. Plant studies have provided numerous important contributions to the epigenetic research. For example, gene imprinting, a mechanism of parental allele-specific gene expression, was firstly observed in maize; evidence of paramutation, an epigenetic phenomenon that one allele acts in a single locus to induce a heritable change in the other allele, was firstly reported in maize and tomato.Moreover, some unique epigenetic mechanisms have been evolved in plants. For example, the 24-nt siRNA-involved RNA-directed DNA methylation(RdDM) pathway is plant-specific because of the involvements of two plant-specific DNA-dependent RNA polymerases, Pol IV and Pol V. A thorough study of epigenetic mechanisms is of great significance to improve crop agronomic traits and environmental adaptability. In this review, we make a brief summary of important progress achieved in plant epigenetics field in China over the past several decades and give a brief outlook on future research prospects.We focus our review on DNA methylation and histone PTMs, the two most important aspects of epigenetic mechanisms.展开更多
Nonalcoholic fatty liver disease （NAFLD） is the most common liver disease in the world today. Its incidence in adults and children is rising rapidly due to the ongoing epidemics of obesity and type 2 diabetes. Hence...Nonalcoholic fatty liver disease （NAFLD） is the most common liver disease in the world today. Its incidence in adults and children is rising rapidly due to the ongoing epidemics of obesity and type 2 diabetes. Hence, it has become a global public health issue. Envi- ronmental factors have been found to play a major role in the etiology of NAFLD, especially for genetically susceptible populations. Among these, one of the most important factors is junk food, especially the typical ＂Western-style＂ diet rich in simple carbohydrates, saturated fat, and highly processed food materials. Genetic predisposition to NAFLD does occur; however, a precise definition of genetic factors responsible for NAFLD is still lacking. Specific variants of different genes have been shown to present a risk for NAFLD. Genetic studies might be helpful in the management of the disease by developing novel treatment strategies based on individual＇s genotype.展开更多
Plant centromeres are generally composed of tandem arrays of simple repeats that form a complex chromosome locus where the kinetochore forms and microtubules attach during mitosis and meiosis. Each chromosome has one ...Plant centromeres are generally composed of tandem arrays of simple repeats that form a complex chromosome locus where the kinetochore forms and microtubules attach during mitosis and meiosis. Each chromosome has one centromere region, which is essential for accurate division of the genetic material. Recently, chromosomes containing two centromere regions （called dicentric chromosomes） have been found in maize and wheat. Interestingly, some dicentric chromosomes are stable because only one centromere is active and the other one is inactivated. Because such arrays maintain their typical structure for both active and inactive centromeres, the specification of centromere activity has an epigenetic component independent of the DNA sequence. Under some circumstances, the inactive centromeres may recover centromere function, which is called centromere reactivation. Recent studies have highlighted the important changes, such as DNA methylation and histone modification, that occur during centromere inactivation and reactivation.展开更多
文摘Journal of Genetics and Genomics(JGG),launched in 1974,celebrates its 50th birthday in 2023.With continuous support from our authors,reviewers,readers,and the editorial board,JGG has made remarkable progress in the past year by publishing 122 papers covering major disciplines in life sciences and medical genetics with exciting discoveries.It is worthwhile to note that we have recruited 66 young talents to join JGG as junior editors,resulting in significant improvement in manuscript evaluation and journal promotion.Here,we summarize major progresses reported in JGG in 2023 fromaneditorial view.
基金financially supported by National Natural Science Foundation of China(32301800,32301923 and 32072053)Wheat Industrial Technology System of Shandong Province(SDAIT-01-01)Key Research and Development Project of Shandong Province(2022LZG002-4,2023LZGC009-4-4).
文摘Powdery mildew negatively impacts wheat yield and quality.Emmer wheat(Triticum dicoccum),an ancestral species of common wheat,is a gene donor for wheat improvement.Cultivated emmer accession H1-707 exhibited all-stage resistance to powdery mildew over consecutive years.Genetic analysis of H1-707 at the seedling stage revealed a dominant monogenic inheritance pattern,and the underlying gene was designated Pm71.By employing bulked segregant exome sequencing(BSE-Seq)and using 2000 F2:3 families,Pm71 was fine mapped to a 336-kb interval on chromosome arm 6AS by referencing to the durum cv.Svevo RefSeq 1.0.Collinearity analysis revealed high homology in the candidate interval between Svevo and six Triticum species.Among six high-confidence genes annotated within this interval,TRITD6Av1G005050 encoding a GDSL esterase/lipase was identified as a key candidate for Pm71.
基金funded by grants from the National Natural Science Foundation of China (31930006 to Y.W.)the National Key Research and Development Program of China (2022YFF1002903 to Y.W.)+1 种基金the Top Talents Program “One Case One Discussion”(Yishiyiyi to Y.W.)from Shandong provinceShandong Agricultural University Talent Introduction Start-up Fund (to N.Z.)
文摘Branching is a critical aspect of plant architecture that significantly impacts the yield and adaptability of staple cereal crops like rice and wheat.Cereal crops develop tillers during the vegetative stage and panicle or spike branches during the reproductive stage,respectively,both of which are significantly impacted by hormones and genetic factors.Tillering and panicle branching are closely interconnected and exhibit high environmental plasticity.Here,we summarize the recent progress in genetic,hormonal,and environmental factors regulation in the branching of rice and wheat.This review not only provides a comprehensive overview of the current knowledge on branching mechanisms in rice and wheat,but also explores the prospects for future research aimed at optimizing crop architecture for enhanced productivity.
基金supported by grant from the National Natural Science Foundation of China(32330056)。
文摘Originally extracted from willow bark,salicylic acid(SA)provided the structural basis for the synthesis of acetylsalicylic acid(aspirin)in 1897,a milestone that exemplifies the far-reaching biomedical relevance of plant-derived metabolites(Desborough and Keeling,2017).In plants,SA functions as a pleiotropic phytohormone that orchestrates immune reprogramming,serving as a central mediator of both local defense responses and systemic acquired resistance(SAR).
基金supported by grants from the National Natural Science Foundation of China(32170312,31830017,and 32200256)State Key Laboratory of Plant Genomics(SKLPG2023-22).
文摘Reactive oxygen species(ROS)and nitric oxide(NO)are two critical classes of signaling molecules that regulate plant development and stress responses.The intracellular level of S-nitrosoglutathione(GSNO),a major bioactive NO species,is regulated by the highly conserved GSNO reductase(GSNOR).However,the molecular mechanisms underlying ROS-mediated regulation of GSNOR remain largely unclear.Here,we show that H_(2)O_(2)negatively regulates the activity of GSNOR1 during ovule development in Arabidopsis.S-sulfenylation of GSNOR1 at Cys-284 inhibits its enzymatic activity.A GSNOR1C284S mutation causes a reduction of the total SNO level in pistils,thereby disrupting NO homeostasis and eventually leading to defective ovule development.These findings illustrate a unique mechanism by which ROS regulates ovule development through S-sulfenylation-mediated inhibition of the GSNOR activity,thereby establishing a molecular link between ROS and NO signaling pathways in reproductive development.
基金supported by the National Natural Science Foundation of China(Grant No.32172514).
文摘In grapevine,previous studies have suggested that,gibberellin(GA)inhibits bud break before dormancy release while enhanced after dormancy release;the capacity of GA accumulation shows a trend of first inhibition and then upregulation.However,the regulatory mechanism of GA metabolism genes expression is as yet unclear during the process of dormancy release.In this study,we further validated the effect of GA3 and hydrogen cyanamide(HC)on bud break of‘Red Globe’grape,confirmed inhibition and promotion effect,respectively.Restricted GA biosynthetic genes'expression and enhanced GA catabolic gene's expression were observed in the early stage after HC treatment,while opposite expression trend showed in the late stage.VvSVP1,a MADS-box transcription factor gene,was downregulated in the late stage,which might play an important role in regulating GA metabolism genes'expression.It was shown that,VvSVP1 could bind to the promoter regions of GA biosynthetic gene VvGA20ox6 and catabolic gene VvGA2ox3,negatively and positively regulated the corresponding genes'expression,respectively;the contents of GAs related to GA20ox were significantly reduced in the grape callus overexpressed VvSVP1,while the ratio of GAs related to GA2ox were significantly increased.Taken together,VvSVP1 can regulate the endogenous GAs level by manipulating the expression of GA metabolism genes before dormant bud break induced by HC.Our findings may provide some new theoretical insights for the study of bud dormancy regulation in the perennial woody fruit trees.
基金supported by the National Natural Science Foundation of China(Grant Nos.32130096 and 32172667)the Central Public-Interest Scientific Institution Basal Research Fund,China(Grant No.Y2022QC14).
文摘Sulfate transporters(SULTRs)facilitate sulfate uptake and transport in plants.In plants,SULTRs can be classified into four distinct functional groups,among which SULTR3 members are the least characterized,and their functions have not yet been confirmed,especially for SULTR3 in rice.In this study,we analyzed the expression patterns,subcellular localization,and inorganic phosphate(Pi)transporter activity of SULTR3 proteins in yeast.Except for OsSULTR3.4,which localized to the plasma membrane,other OsSULTR3 members were localized to the endoplasmic reticulum(ER)membrane in rice protoplast cells.
基金supported by the National Natural Science Foundation of China(No.41930651 and 41807013)the Youth Innovation Promotion Association of the Chinese Academy of Sciences(No.2020102)。
文摘Vegetation response to the combined effects of human and nature has raised extensive controversy.The relative contributions of ecological restoration and multiple climate factors on vegetation variation remain unclear.Combining spatial and temporal changes in fractional vegetation cover(FVC)and net primary productivity(NPP)from 2000 to 2021,we assessed the trend of these two indicators and quantified the impact of ecological restoration and climate factors on vegetation variation using partial correlation and residual analysis.The results indicated that:(1)From 2000 to 2021,vegetation restoration in the Taihang Mountain area was notably successful.FVC increased by 5.71%over 22 years with a change trend of 0.0018 per annum.The cumulative growth rate of NPP over the same period was 42.03%,corresponding to an average annual increase of 5.492 g(C)·m^(-2)·a^(-1).(2)During the 22-year period,the contribution rates of ecological engineering to FVC and NPP were 65.13%and 64.33%,respectively.Ecological restoration was the dominant factor affecting vegetation change,and its impact was increasing in over 90%of the regional projects.The primary climate controlling factor of NPP was precipitation,while FVC responded synergistically to precipitation(primary)and temperature(secondary).Overall,the impact of precipitation on vegetation was 1.5 times that of temperature.(3)Among various ecological restoration types,grassland restoration contributed the most to vegetation change,followed by forest land restoration.This study offers valuable scientific insights that can guide the sustainability of vegetation ecology in semi-arid mountainous areas.
基金National Natural Science Foundation of China,No.41930865Project for Innovative Capacity Improvement in Hebei Province,No.225A4201D。
文摘Nitrate(NO_(3)^(-))accumulation and transport processes in the thick vadose zone affect the evolution of the groundwater NO_(3)^(-)content in intensive agricultural regions.Agricultural land-use change(ALUC),typically accompanied by substantial alterations in nitrogen fertilizer application and irrigation practices,is an important influencing factor.This study evaluated the changes in NO_(3)^(-)accumulation and transport in the deep vadose zone(DVZ,below the root zone),and the groundwater NO_(3)^(-)content associated with ALUC from grain to vegetable fields in the North China Plain(NCP).The ALUC from grain to vegetable resulted in nitrate–nitrogen(NO_(3)^(-)-N)accumulation in DVZ increased by 235.5 kg ha^(-1)m^(-1)(163.2%)in the piedmont plain and 224.9 kg ha^(-1)m^(-1)(102.7%)in the central plain,respectively.This change accelerated downward transport velocity in the DVZ(from 0.81±0.47 to 0.89±0.55 m yr^(-1)in the piedmont plain,and from 0.24±0.12 to 0.92±0.12 m yr^(-1)in the central plain)and increased NO_(3)^(-)leaching fluxes.High transport velocity and leaching fluxes resulted in chemical N-fertilizer entering the aquifer in several areas in the piedmont plain.The impact of the agricultural activity intensity changes,accompanied by the ALUC,on groundwater quantity and quality should be considered in similar regions.
基金financially supported by the National Key R&D Program of China(No.2022YFD1500502)the National Natural Science Foundation of China(No.42277347)+1 种基金the Development Program of the Inner Mongolia Autonomous Region,China(No.NMKJXM202401-01)China Agriculture Research System of Ministry of Finance and Ministry of Agriculture and Rural Affairs(No.CARS–03).
文摘Crop productivity may be affected by soil salinization from brackish water irrigation.Plants host species-specific soil microorganisms that can enhance plant adaptability to salt stress.However,it is unclear whether these specific microorganisms recruited under brackish water irrigation are related to microbial resistance,which has been proven to promote crop production.A field experiment was conducted using five local wheat varieties,each of which was exposed to brackish or fresh water irrigation for four years.Brackish water irrigation tended to increase wheat yield by 6.38%–19.40%,although the increase in yield under brackish water relative to fresh water irrigation varied with wheat variety.The compositions of the bacterial and fungal communities in the bulk soil and rhizosphere were measured,and the taxa enriched following brackish water irrigation were isolated to investigate microbial resistance.We found that the resistance of each wheat variety was determined by specifically recruited microbial taxa with relevant functions.The yield incremental rates were positively regulated by microbial resistance from the bulk soil and rhizosphere.Moreover,the resistance from the bulk soil and rhizosphere had similar effects,and microbial consortia containing both beneficial and harmful taxa determined microbial resistance.These results indicated that brackish water irrigation-induced recruitment of specific microbial taxa from either the bulk soil or the rhizosphere or both positively contributed to the yield incremental rate and provided a list of key taxa linked to the magnitude of yield variation caused by brackish water irrigation.
基金supported by the National Natural Science Foundation of China(32372116)to Yan He.
文摘Chromosomal DNA double-strand breaks(DSBs)are often generated in the genome of all living organisms.To combat DNA damage,organisms have evolved several DSB repair mechanisms,with nonhomologous end-joining(NHEJ)and homologous recombination(HR)being the two most prominent.Although two major pathways have been extensively studied in Arabidopsis,rice and other mammals,the exact functions and differences between the two DSB repair pathways in maize still remain less well understood.Here,we characterized mre11a and rad50,mutants of HR pathway patterns,which showed drastic degradation of the typically persistent embryo and endosperm during kernel development.Loss of MRE11 or RAD50 function led to chromosomal fragments and chromosomal bridges in anaphase.While we also reported that the NHEJ pathway patterns,KU70 and KU80 are associated with developmental growth and genome stability.ku70 and ku80 both displayed an obvious dwarf phenotype.Cytological analysis of the mutants revealed extensive chromosome fragmentation in metaphase and subsequent stages.Loss of KU70/80 function upregulated the expression of genes involved in cell cycle progression and nuclear division.These results provide insights into how NHEJ and HR are mechanistically executed during different plant developmental periods and highlight a competitive and complementary relationship between the NHEJ and HR pathways for DNA double-strand break repair in maize.
基金supported by the National Natural Science Foundation of China(32070607)the National Key Research and Development Program of China(2020YFA0804000)the CAS Project for Young Scientists in Basic Research(YSBR-012).
文摘In the mammalian genome,most CpGs are methylated.However,CpGs within the CpG islands(CGIs)are largely unmethylated,which are important for gene expression regulation.The mechanism underlying the low methylation levels at CGIs remains largely elusive.KDM2 proteins(KDM2A and KDM2B)are H3K36me2 demethylases known to bind specifically at CGIs.Here,we report that depletion of each or both KDM2 proteins,or mutation of all their JmjC domains that harbor the H3K36me2 demethylation activity,leads to an increase in DNA methylation at selective CGIs.The Kdm2a/2b double knockout shows a stronger increase in DNA methylation compared with the single mutant of Kdm2a or Kdm2b,indicating that KDM2A and KDM2B redundantly regulate DNA methylation at CGIs.In addition,the increase of CGI DNA methylation upon mutations of KDM2 proteins is associated with the chromatin environment.Our findings reveal that KDM2A and KDM2B function redundantly in regulating DNA methylation at a subset of CGIs in an H3K36me2 demethylation-dependent manner.
基金supported by the National Key Research and Development Program of China(2021YFD1200600)the National Natural Science Foundation of China(32272105).
文摘Powdery mildew is a serious disease caused by Blumeria graminis f.sp.tritici(Bgt)that critically threatens the yield and quality of wheat(Triticum aestivum L.).Using effective powdery mildew resistance genes is the optimal method for controlling this disease.Against the background of high genetic homogeneity among the modern commercial cultivars that are mainly derived from conventional interbreeding,the resistance genes from wheat relatives have especially prominent advantages.Octoploid triticale,produced from common wheat and rye(Secale cereale L.)through distant hybridization,is a new synthetic species and valuable gene donor for wheat improvement.In this study,we developed the wheat-rye line YT5 through the hybridization of octaploid triticale and two wheat lines.YT5 was confirmed to be a 6RL ditelosomic addition and 1R(1B)substitution line using genomic in situ hybridization(GISH),multicolor fluorescence in situ hybridization(mc-FISH),multicolor GISH(mc-GISH)and molecular marker analysis.Genetic analysis showed that the powdery mildew resistance in YT5 was derived from the rye chromosome arm 6RL.After inoculation with different Bgt isolates at the seedling stage,YT5 had compound reaction patterns with both obvious spores and hypersensitivity,and it gradually became highly resistant until the adult-plant stage,thus showing a resistance response significantly different from the reported Pm genes from rye chromosome 6RL.YT5 also showed promising agronomic performance,so it is expected to be an elite resistance donor for wheat improvement.To promote the transfer of the chromosome arm 6RL of YT5 in marker-assisted selection(MAS)breeding,we selected and verified two 6RL-specific kompetitive allelespecific PCR(KASP)markers that can be applied to efficiently detect this chromosome arm in different wheat backgrounds.
基金supported by grants from the Chinese Academy of Sciences(XDA24010101)the Biological Breeding-National Science and Technology Major Project(2024ZD04077)+2 种基金the National Key Research and Development Program of China(2023YFF1001200)Natural Science Foundation of Zhejiang Province(LD24C130001)the Agricultural Science and Technology Innovation Program(ASTIP)of CAAS。
文摘A later heading date generally leads to higher grain yield in favorable ecological regions;however,grain yield reaches a limit as the heading date exceeds a certain threshold.Ghd7 is the first cloned major gene that regulates heading date,plant height and grain number.Here,we investigated the relationship between Ghd7 and florigen genes Hd3a and RFT1,to determine their roles in regulating heading date and grain number under different photoperiods.Our results revealed that under long-day(LD)conditions,Hd3a acts prior to RFT1 to promote heading while negatively regulating plant height and grain number.In contrast,Ghd7 positively regulates heading date,plant height,and grain number by inhibiting both Hd3a and RFT1.Under short-day(SD)conditions,the functions of Hd3a and RFT1 remain consistent with those under LD conditions,but Ghd7 does not inhibit their expression,resulting in a weaker phenotypic effect compared to Hd3a.Additionally,under both LD and SD conditions,increased Ghd7 expression enhances its inhibitory effect on Hd3a and RFT1,leading to later heading and increased grain number;however,once the heading date exceeds 94 d,grain number no longer increases.Moreover,the gn1a allele increased grain number by 16.5%to 42.5%,while combinations of the elite alleles from Ghd7,Hd3a,RFT1,and Gn1a significantly increased grain number by up to 240.9%.Therefore,we propose a new breeding strategy to optimize the heading date and grain number using the Ghd7Hd3aRFT1gn1a combination of Ghd7,Hd3a,RFT1,and Gn1a under LD conditions,and the Ghd7hd3aRFT1gn1a combination under SD conditions.This strategy improved the yield of the high-quality Northeast variety Kongyu 131(KY131)by 69.1%in Beijing and 93.7%in Hainan.This strategy will greatly improve the efficiency of north-to-south adaptation in rice,providing theoretical guidance for expanding the geographical adaptability of rice varieties.
基金support provided by the Department of Science and Technology,Science and Engineering Research Board(DST-SERB),the Anusandhan National Research Foundation(ANRF),State University Research Excellence(SERB-SURE),Ministry of Science and Technology,Govt.of India(SUR/2022/001353).
文摘Cancer is a global health problem and one of the leading causes of mortality.Immune checkpoint inhibitors have revolutionized the field of oncology,emerging as a powerful treatment strategy.A key pathway that has garnered considerable attention is programmed cell death-1(PD-1)/programmed cell death-ligand 1(PD-L1).The interaction between PD-L1 expressed on tumor cells and PD-1 reduces the innate immune response and thus compromises the capability of the body’s immune system.Furthermore,it controls the phenotype and functionality of innate and adaptive immune components.A range of monoclonal antibodies,including avelumab,atezolizumab,camrelizumab,dostarlimab,durvalumab,sinitilimab,toripalimab,and zimberelimab,have been developed for targeting the interaction between PD-1 and PD-L1.These agents can induce a broad spectrum of autoimmune-like complications that may affect any organ system.Recent studies have focused on the effect of various natural compounds that inhibit immune checkpoints.This could contribute to the existing arsenal of anticancer drugs.Several bioactive natural agents have been shown to affect the PD-1/PD-L1 signaling axis,promoting tumor cell apoptosis,influencing cell proliferation,and eventually leading to tumor cell death and inhibiting cancer progression.However,there is a substantial knowledge gap regarding the role of different natural compounds targeting PD-1 in the context of cancer.Hence,this review aims to provide a common connection between PD-1/PD-L1 blockade and the anticancer effects of distinct natural molecules.Moreover,the primary focus will be on the underlying mechanism of action as well as the clinical efficacy of bioactive molecules.Current challenges along with the scope of future research directions targeting PD-1/PD-L1 interactions through natural substances are also discussed.
基金supported by grants from the Chinese Academy of Sciences(XDB39050800)the Major Project of Guangzhou National Laboratory(GZNL2024A03013)the National Natural Science Foundation of China(92357308 and 32321004)。
文摘The circadian clock is a highly hierarchical network of endogenous pacemakers that primarily maintains and directs oscillations through transcriptional and translational feedback loops,which modulates an approximately 24-h cycle of endocrine and metabolic rhythms within cells and tissues.While circadian clocks regulate metabolic processes and related physiology,emerging evidence indicates that metabolism and circadian rhythm are intimately intertwined.In this review,we highlight the concept of metabolites,including lipids and other polar metabolites generated from intestinal microbial metabolism and nutrient intake,as time cues that drive changes in circadian rhythms,which in turn influence metabolism and aging.Furthermore,we discuss the roles of functional metabolites as circadian cues,paving a new direction on potential intervention targets of circadian disruption,pathological aging,as well as metabolic diseases that are clinically important.
基金supported by the National Key R&D Program of China(2023YFD1200704)the intramural research support from Temasek Life Sciences Laboratory.
文摘On top of genetic information,organisms have evolved complex and sophisticated epigenetic regulation to adjust gene expression in response to developmental and environmental signals.Key epigenetic mechanisms include DNA methylation,histone modifications and variants,chromatin remodeling,and chemical modifications of RNAs.Epigenetic control of environmental responses is particularly important for plants,which are sessile and unable to move away from adverse environments.Besides enabling plants to rapidly respond to environmental stresses,some stress-induced epigenetic changes can be maintained,providing plants with a pre-adapted state to recurring stresses.Understanding these epigenetic mechanisms offers valuable insights for developing crop varieties with enhanced stress tolerance.Here,we focus on abiotic stresses and summarize recent progress in characterizing stress-induced epigenetic changes and their regulatory mechanisms and roles in plant abiotic stress resistance.
基金supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (XDB27040203)the National Natural Science Foundation of China (No.31770155)
文摘Epigenetics refers to the study of heritable changes in gene function that do not involve changes in the DNA sequence. Such effects on cellular and physiological phenotypic traits may result from external or environmental factors or be part of normal developmental program. In eukaryotes, DNA wraps on a histone octamer(two copies of H2A, H2B, H3 and H4) to form nucleosome, the fundamental unit of chromatin. The structure of chromatin is subjected to a dynamic regulation through multiple epigenetic mechanisms, including DNA methylation, histone posttranslational modifications(PTMs), chromatin remodeling and noncoding RNAs. As conserved regulatory mechanisms in gene expression, epigenetic mechanisms participate in almost all the important biological processes ranging from basal development to environmental response. Importantly, all of the major epigenetic mechanisms in mammalians also occur in plants. Plant studies have provided numerous important contributions to the epigenetic research. For example, gene imprinting, a mechanism of parental allele-specific gene expression, was firstly observed in maize; evidence of paramutation, an epigenetic phenomenon that one allele acts in a single locus to induce a heritable change in the other allele, was firstly reported in maize and tomato.Moreover, some unique epigenetic mechanisms have been evolved in plants. For example, the 24-nt siRNA-involved RNA-directed DNA methylation(RdDM) pathway is plant-specific because of the involvements of two plant-specific DNA-dependent RNA polymerases, Pol IV and Pol V. A thorough study of epigenetic mechanisms is of great significance to improve crop agronomic traits and environmental adaptability. In this review, we make a brief summary of important progress achieved in plant epigenetics field in China over the past several decades and give a brief outlook on future research prospects.We focus our review on DNA methylation and histone PTMs, the two most important aspects of epigenetic mechanisms.
基金supported by University Grants Commission, New Delhi,India
文摘Nonalcoholic fatty liver disease （NAFLD） is the most common liver disease in the world today. Its incidence in adults and children is rising rapidly due to the ongoing epidemics of obesity and type 2 diabetes. Hence, it has become a global public health issue. Envi- ronmental factors have been found to play a major role in the etiology of NAFLD, especially for genetically susceptible populations. Among these, one of the most important factors is junk food, especially the typical ＂Western-style＂ diet rich in simple carbohydrates, saturated fat, and highly processed food materials. Genetic predisposition to NAFLD does occur; however, a precise definition of genetic factors responsible for NAFLD is still lacking. Specific variants of different genes have been shown to present a risk for NAFLD. Genetic studies might be helpful in the management of the disease by developing novel treatment strategies based on individual＇s genotype.
基金supported by the grants from the National Natural Science Foundation of China (Nos.31071083 and 31130033)the National Science Foundation of USA (No.DBI 0922703)
文摘Plant centromeres are generally composed of tandem arrays of simple repeats that form a complex chromosome locus where the kinetochore forms and microtubules attach during mitosis and meiosis. Each chromosome has one centromere region, which is essential for accurate division of the genetic material. Recently, chromosomes containing two centromere regions （called dicentric chromosomes） have been found in maize and wheat. Interestingly, some dicentric chromosomes are stable because only one centromere is active and the other one is inactivated. Because such arrays maintain their typical structure for both active and inactive centromeres, the specification of centromere activity has an epigenetic component independent of the DNA sequence. Under some circumstances, the inactive centromeres may recover centromere function, which is called centromere reactivation. Recent studies have highlighted the important changes, such as DNA methylation and histone modification, that occur during centromere inactivation and reactivation.
