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Abnormal function of EPHA2/p.R957P mutant in congenital cataract
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作者 Jing-Jin Zhang Zong-Fu Cao +8 位作者 Bi-Ting Zhou Ju-Hua Yang Zhong Li Shuang Lin Xiao-Le Chen Nan-Wen Zhang Qin Ye Xu Ma Yi-Hua Zhu 《International Journal of Ophthalmology(English edition)》 SCIE CAS 2024年第6期1007-1017,共11页
AIM:To identify genetic defects in a Chinese family with congenital posterior polar cataracts and assess the pathogenicity.METHODS:A four-generation Chinese family affected with autosomal dominant congenital cataract ... AIM:To identify genetic defects in a Chinese family with congenital posterior polar cataracts and assess the pathogenicity.METHODS:A four-generation Chinese family affected with autosomal dominant congenital cataract was recruited.Nineteen individuals took part in this study including 5 affected and 14 unaffected individuals.Sanger sequencing targeted hot-spot regions of 27 congenital cataract-causing genes for variant discovery.The pathogenicity of the variant was evaluated by the guidelines of American College of Medical Genetics and InterVar software.Confocal microscopy was applied to detect the subcellular localization of fluorescence-labeled ephrin type-A receptor 2(EPHA2).Co-immunoprecipitation assay was implemented to estimate the interaction between EphA2 and other lens membrane proteins.The mRNA and protein expression were analyzed by reverse transcription-polymerase chain reaction(qRT-PCR)and Western blotting assay,respectively.The cell migration was analyzed by wound healing assay.Zebrafish model was generated by ectopic expression of human EPHA2/p.R957P mutant to demonstrate whether the mutant could cause lens opacity in vivo.RESULTS:A novel missense and pathogenic variant c.2870G>C was identified in the sterile alpha motif(SAM)domain of EPHA2.Functional studies demonstrated the variant’s impact:reduced EPHA2 protein expression,altered subcellular localization,and disrupted interactions with other lens membrane proteins.This mutant notably enhanced human lens epithelial cell migration,and induced a central cloudy region and roughness in zebrafish lenses with ectopic expression of human EPHA2/p.R957P mutant under differential interference contrast(DIC)optics.CONCLUSION:Novel pathogenic c.2870G>C variant of EPHA2 in a Chinese congenital cataract family contributes to disease pathogenesis. 展开更多
关键词 congenital cataract EPHA2 missense variant function analysis
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Multienzyme co-immobilization-based bioelectrode:Design of principles and bioelectrochemical applications 被引量:2
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作者 Ranran Wu Haiyan Song +2 位作者 Yuanming Wang LeiWang Zhiguang Zhu 《Chinese Journal of Chemical Engineering》 SCIE EI CAS CSCD 2020年第8期2037-2050,共14页
Enzyme cascade reactions play significant roles in bioelectrochemical processes because they permit more complex reactions. Co-immobilization of multienzyme on the electrode could help to facilitate substrate/intermed... Enzyme cascade reactions play significant roles in bioelectrochemical processes because they permit more complex reactions. Co-immobilization of multienzyme on the electrode could help to facilitate substrate/intermediate transfer among different enzymes and electron transfer from enzyme active sites to the electrode with high stability and retrievability. Different co-immobilization strategies to construct multienzyme bioelectrodes have been widely reported, however, up to now, they have barely been reviewed. In this review, we focus on recent state-of-the-art techniques for constructing co-immobilized multienzyme electrodes including random and positional co-immobilization. Particular attention is given to strategies such as multienzyme complex and surface display. Cofactor co-immobilization on the electrode is also crucial for the enhancement of catalytic reaction and electron transfer, yet, few studies have been reported. The up-to-date advances in bioelectrochemical applications of multienzyme bioelectrodes are also presented. Finally, key challenges and future perspectives are discussed. 展开更多
关键词 Multienzyme co-immobilization Bioelectrode Bioelectrochemical system Cascade reaction
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Two approaches for calculating female fetal DNA fraction in noninvasive prenatal testing based on size analysis of maternal DNA fragments
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作者 JIANBO LU XIAOHAN SUN XU MA 《BIOCELL》 SCIE 2022年第1期185-193,共9页
The concentration of cell-free fetal DNA fragments should be detected before noninvasive prenatal testing(NIPT).The fetal DNA molecules have significant clinical potential in determining the overall performance of NIP... The concentration of cell-free fetal DNA fragments should be detected before noninvasive prenatal testing(NIPT).The fetal DNA molecules have significant clinical potential in determining the overall performance of NIPT and clinical interpretation.It is important to measure fetal DNA fraction before NIPT.However,there is still little research on how to calculate the concentration of female fetuses.Two estimation approaches were proposed to calculate fetal DNA fraction,including the fragments size-based approach,aneuploid-based approach,which are all approaches based on chromosome segments.Based on high-throughput sequencing data,two approaches to calculate the DNA fraction of male fetuses were tested and obtained the experiment values,which were close to the actual values.The correlation coefficient of fragments size-based approach was 0.9243(P<0.0001)and the aneuploid-based approach reached 0.9339(P<0.0001).We calculated the concentration of female fetuses and obtained remarkable experimental results.We came up with two approaches for calculating the fetal DNA fraction of female fetuses.It provides an important theoretical basis for the detection of female fetal concentration in future clinical diagnosis. 展开更多
关键词 Fetal DNA fraction Noninvasive prenatal testing Cell-free fetal DNA Female fetus
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PDB-assistant:an integrated Web tool for analyzing and editing PDBs
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作者 Yukun ZHAO Changsen ZHOU +4 位作者 Jianhong GAN Zhi-Xiong XIAO Jianbo LU Xu MA Yang CAO 《Frontiers of Computer Science》 2025年第3期129-131,共3页
1 Introduction The rapidly growing protein structure data is a valuable biological resource and has been a focus of research in the academic community.The abundance of 3D structure data also presents challenges for re... 1 Introduction The rapidly growing protein structure data is a valuable biological resource and has been a focus of research in the academic community.The abundance of 3D structure data also presents challenges for researchers in terms of handling and analysis.Currently,the most popular format for bioinformatics programs as the input/output is the PDB format,a text-based format created in 1976 known for its clear and readable structure.Parsing PDB files provides crucial information about the structure,function,and interactions of biomolecules. 展开更多
关键词 parsingpdb files biological resource 3d structure data biomolecules PDB format protein structure data
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Elucidating the pathogenesis of bladder cancer through single-cell chromatin accessibility and DNA methylation analysis
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作者 Yu Xiao Lingao Ju +7 位作者 Gang Wang Wan Jin Hongwei Peng Zongning Zhou Mengxue Yu Yi Zhang Kaiyu Qian Xinghuan Wang 《Genes & Diseases》 2025年第5期1-4,共4页
Previous studies have sought to classify bladder cancer(BLCA)into different molecular subtypes to understand its pathogenic pathways and uncover specific treatments.1 These subtypes,often based on genetic,transcriptom... Previous studies have sought to classify bladder cancer(BLCA)into different molecular subtypes to understand its pathogenic pathways and uncover specific treatments.1 These subtypes,often based on genetic,transcriptomic,or proteomic profiles,aim to stratify patients for precision medicine and improve therapeutic outcomes.Despite these efforts,such classifications have rarely been applied in clinical practice due to challenges in standardization,reproducibility,and limited translational studies validating their utility.1 The treatment of BLCA predominantly relies on surgery,often combined with chemotherapy,immunotherapy,targeted therapy,or antibody-drug conjugates.Radical cystectomy remains the cornerstone for muscle-invasive bladder cancer(MIBC),while transurethral resection and intravesical therapy are common for non-muscle-invasive bladder cancer(NMIBC).2 However,the choice of its treatment modality still depends specifically on whether the disease is NMIBC or MIBC,rather than on the various molecular subtype classifications.3 Bridging the gap between molecular research and clinical application remains a significant challenge,highlighting the need for robust biomarker validation and the development of treatment algorithms that incorporate these subtypes to better guide personalized therapy. 展开更多
关键词 molecular subtypes bladder cancer understand its pathogenic pathways stratify patients precision medicine translational studies single cell chromatin accessibility DNA methylation
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Urinary exosomal lnc-TAF12e2:1 promotes bladder cancer progression through the miR-7847e3p/ASB12 regulatory axis
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作者 Song Chen Jie Cheng +3 位作者 Shuangtai Liu Danni Shan Ting Wang Xinghuan Wang 《Genes & Diseases》 2025年第4期420-436,共17页
Exosomes encompass a great deal of valuable biological information and play a crit-ical role in tumor development.However,the mechanism of exosomal lncRNAs remains poorly elucidated in bladder cancer(BCa).In this stud... Exosomes encompass a great deal of valuable biological information and play a crit-ical role in tumor development.However,the mechanism of exosomal lncRNAs remains poorly elucidated in bladder cancer(BCa).In this study,we identified exosomal lnc-TAF12e2:1 as a novel biomarker in BCa diagnosis and aimed to investigate the underlying biological function.Dual luciferase reporter assay,RNA immunoprecipitation(RIP),RNA pulldown assays,and xenograft mouse model were used to verify the competitive endogenous RNA mechanism of lnc-TAF12e2:1.We found exosomal lnc-TAF12e2:1 up-regulated in urinary exosomes,tumor tissues of patients,and BCa cells.Down-regulation of lnc-TAF12e2:1 impaired BCa cell prolif-eration and migration,and promoted cell cycle arrest at the G0/G1 phase and cell apoptosis.The opposite effects were also observed when lnc-TAF12e2:1 was overexpressed.lnc-TAF12 e2:1 was transferred by intercellular exosomes to modulate malignant biological behavior.Mechanistically,lnc-TAF12e2:1 packaged in the exosomes relieved the miRNA-mediated silence effect on ASB12 via serving as a sponger of miR-7847e3p to accelerate progression in BCa.ASB12 was also first proved as an oncogene to promote cell proliferation and migration and depress cell cycle arrest and cell apoptosis in our data.In conclusion,exosomal lnc-TAF12e2:1,located in the cytoplasm of BCa,might act as a competitive endogenous RNA to competitively bind to miR-7847e3p,and then be involved in miR-7847e3p/ASB12 regulatory axis to promote tumorigenesis,which provided a deeper insight into the molecular mechanism of BCa. 展开更多
关键词 ASB12 Bladder cancer EXOSOME lnc-TAF12e2:1 miR-7847e3p
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Stepwise differentiation of functional pancreatic β cells from human pluripotent stem cells 被引量:2
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作者 Wenwen Jin Wei Jiang 《Cell Regeneration》 2022年第1期227-245,共19页
Pancreaticβcells differentiated from stem cells provide promise for cell replacement therapy of diabetes.Human pluripotent stem cells could be differentiated into definitive endoderm,followed by pancreatic progenitor... Pancreaticβcells differentiated from stem cells provide promise for cell replacement therapy of diabetes.Human pluripotent stem cells could be differentiated into definitive endoderm,followed by pancreatic progenitors,and then subjected to endocrinal differentiation and maturation in a stepwise fashion.Many achievements have been made in making pancreaticβcells from human pluripotent stem cells in last two decades,and a couple of phase I/II clinical trials have just been initiated.Here,we overview the major progresses in differentiating pancreaticβcells from human pluripotent stem cells with the focus on recent technical advances in each differentiation stage,and briefly discuss the current limitations as well. 展开更多
关键词 Pancreaticβcell Human pluripotent stem cells Stepwise differentiation Diabetes mellitus
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Correction: Stepwise differentiation of functional pancreatic β cells from human pluripotent stem cells
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作者 Wenwen Jin Wei Jiang 《Cell Regeneration》 2022年第1期315-315,共1页
Following publication of the original article(Jin&Jiang,2022),it was reported that the word“financial”needs to be removed from the Competing interests section.The original sentence was:The authors declare no com... Following publication of the original article(Jin&Jiang,2022),it was reported that the word“financial”needs to be removed from the Competing interests section.The original sentence was:The authors declare no competing financial interests. 展开更多
关键词 removed SECTION FUNCTIONAL
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Maternal Preconception Serum Alanine Aminotransferase Levels and Risk of Preterm Birth among Reproductive-Aged Women—China,2013-2017 被引量:1
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作者 Chuanyu Zhao Jiajing Jia +17 位作者 Hanbin Wu Qin Xu Xinyi Lyu Meiya Liu Xuan Hu Jueming Lei Yuzhi Deng Yuan He Yuanyuan Wang Zuoqi Peng Ya Zhang Hongguang Zhang Qiaomei Wang Haiping Shen Yiping Zhang Donghai Yan Ying Yang Xu Ma 《China CDC weekly》 SCIE CSCD 2024年第10期181-188,I0001,共9页
Summary What is already known about this topic?The significance of maternal liver health concerning preterm birth(PTB)is well recognized;however,there is a gap in understanding the precise influence of preconception s... Summary What is already known about this topic?The significance of maternal liver health concerning preterm birth(PTB)is well recognized;however,there is a gap in understanding the precise influence of preconception serum alanine aminotransferase(ALT)levels on the risk of PTB.What is added by this report? 展开更多
关键词 SERUM PRECISE concerning
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PENG ZU Study on Healthy Aging in China(PENG ZU Cohort):Design and Goals 被引量:1
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作者 Ju Cui Jing Pang +9 位作者 Liqun Zhang Juan Li Xiaolan Wu Xinyi Zhu Wei Ma Senlin Luo Huafang Gao Zhao Wang Jianping Cai Tiemei Zhang 《China CDC weekly》 SCIE CSCD 2024年第34期876-882,共7页
Life expectancy is increasing,leading to the continuous aging of the population in China.Enhancing the health status of the older population is crucial to achieving healthy aging.The primary objective of the PENG ZU S... Life expectancy is increasing,leading to the continuous aging of the population in China.Enhancing the health status of the older population is crucial to achieving healthy aging.The primary objective of the PENG ZU Study on Healthy Aging in China(PENG ZU Cohort)is to understand the natural progression of health status among the aging Chinese population.Specifically,the PENG ZU cohort aims to identify and validate multidimensional aging markers,uncover the underlying mechanisms of systemic aging and functional decline,and develop novel strategies and measures to delay functional decline and adverse health outcomes,while maintaining overall good health.The PENG ZU cohort consists of 26,000 individuals aged 25 to 89 years from seven major geographical regions in China.Diversified data and biospecimens are collected according to standardized procedures at baseline and follow-up visits.Baseline recruitment for the PENG ZU cohort was completed in October 2021.The extensive analysis of multidimensional health-related data and bioresources collected from the cohort is anticipated to develop methods for evaluating functional status and elucidating multilevel,cross-scale interactions and regulatory mechanisms of healthy aging.The findings from this study will enhance the understanding of health changes due to aging,facilitate efficient and effective interventions to maintain functional ability,and reduce the incidence and severity of age-related diseases,thereby further promoting healthy aging. 展开更多
关键词 AGING thereby MAINTAIN
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Association of psychological stress with wives’hypertension across over 10 million Chinese married female population aged 20-49 years
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作者 Zhenyan Zhao Jiajing Jia +12 位作者 Xinyi Lyu Lihua Zhang Yuanyuan Wang Yuan He Zuoqi Peng Ya Zhang Hongguang Zhang Qiaomei Wang Haiping Shen Yiping Zhang Donghai Yan Xu Ma Ying Yang 《Chinese Medical Journal》 SCIE CAS CSCD 2024年第13期1583-1591,共9页
Background:Psychological stress has been reported to be a potential risk factor for hypertension among females,but it remains unclear whether spousal chronic stress levels alter the risk of hypertension among women.We... Background:Psychological stress has been reported to be a potential risk factor for hypertension among females,but it remains unclear whether spousal chronic stress levels alter the risk of hypertension among women.We examined the associations between stress within the family and hypertension among married women.Methods:Reproductive-aged women who were planning for pregnancy and their husbands were recruited from the National Free Pre-pregnancy Checkup Projects(NFPCP)across 31 provinces in China in 2016 and 2017.Perceived stress of wives or husbands was measured with a 5-point Likert-type scale,and assessed from three domains:work/life-related stress,economic stress,and overall stress.Multivariable-adjusted logistic regression models were used to assess the associations between stress status and the prevalence of hypertension.Results:Of 10,027,644 couples,261,098(2.60%)women had hypertension.The results showed that higher stress levels among themselves or their husbands were associated with a higher prevalence of hypertension in women(P_(for trend)<0.001).Compared with non-stressed participants,female participants with the highest stress themselves were at a greater risk of hypertension,with adjusted odds ratio(OR)of 1.31(95%confidence interval[CI]:1.25-1.37);and compared with participants whose husbands had no stress,those whose husbands had the highest stress level were at a higher risk of hypertension with adjusted OR of 1.24(95%CI:1.20-1.29).Moreover,compared with non-stressed status for both couples,only-wife-stressed,only-husband-stressed,and both-stressed couples were found to be significantly associated with increased risks of wives’hypertension,with adjusted ORs of 1.28(95%CI:1.25-1.31),1.19(95%CI:1.17-1.21),and 1.28(95%CI:1.26-1.31),respectively.Conclusion:Moderate to severe stress in both spouses might be associated with female hypertension prevalence,which highlights the importance of paying attention to the psychological stresses of couples within the family. 展开更多
关键词 Psychological stress HYPERTENSION Occupational stress Life stress Financial stress
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AI-Based Hematological Age Predictors and the Association Between Biological Age Acceleration and Type 2 Diabetes Mellitus—Chongqing Municipality,China,2015–2021
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作者 Zhe Yin Yingnan Song +7 位作者 Junhui Zhang Qiaoyun Dai Xinyuan Zhang Xueying Yang Na Nie Cuixia Chen Zongfu Cao Xu Ma 《China CDC weekly》 SCIE CSCD 2024年第45期1188-1193,I0002-I0005,共10页
Introduction:Biological age(BA)can represent the actual state of human aging more accurately than chronological age(CA).Methods:Using hematological data from 112,925 participants in southwestern China,collected betwee... Introduction:Biological age(BA)can represent the actual state of human aging more accurately than chronological age(CA).Methods:Using hematological data from 112,925 participants in southwestern China,collected between 2015 and 2021,this study constructed BA predictors using 7 machine learning(ML)methods(tailored separately for male and female populations).This study then analyzed the association between BA acceleration and type 2 diabetes mellitus(T2DM)within this data using logistic regression.Additionally,it examined the impact of glycemic control on BA in individuals with diabetes.Results:Among all ML models,deep neural networks(DNN)delivered the best performance in male[mean absolute error(MAE)=6.89,r=0.75]and female subsets(MAE=6.86,r=0.74).BA acceleration showed positive correlations with T2DM in both male[odds ratio(OR):2.22,95%confidence interval(CI):1.77–2.77]and female subsets(OR:3.10,95%CI:2.16–4.46),while BA deceleration showed negative correlations in both male(OR:0.32,95%CI:0.27–0.39)and female subsets(OR:0.42,95%CI:0.33–0.53).Individuals with diabetes with normal fasting glucose had significantly lower BAs than those with impaired fasting glucose in all CA groups except for patients older than 80.Discussion:Artificial intelligence(AI)-based hematological BA predictors show promise as advanced tools for assessing aging in epidemiological studies.Implementing AI-based BA predictors in public health initiatives could facilitate proactive aging management and disease prevention. 展开更多
关键词 T2DM IMPAIRED CHONGQING
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Hematological Parameters in the First Trimester and the Risk of Gestational Diabetes Mellitus—Beijing,China,2017–2020 被引量:3
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作者 Xinyi Lyu Jiajing Jia +7 位作者 Haishan Yang Yuzhi Deng Hanbin Wu Shuo Wang Chuanyu Zhao Jueming Lei Xiaoxuan Zou Ying Yang 《China CDC weekly》 SCIE CSCD 2023年第9期194-200,I0008,共8页
Summary What is already known about this topic?Hematological parameters may indicate the presence of chronic low-grade inflammation and increasing viscosity,which are involved in the pathological processes of gestatio... Summary What is already known about this topic?Hematological parameters may indicate the presence of chronic low-grade inflammation and increasing viscosity,which are involved in the pathological processes of gestational diabetes mellitus(GDM).However,the association between several hematological parameters in early pregnancy and GDM has yet to be elucidated.What is added by this report?Hematological parameters in the first trimester,particularly red blood cell(RBC)count and systematic immune index,have a significant impact on GDM incidence.The neutrophils(NEU)count in the first trimester was particularly pronounced for GDM.The upward trend of RBC,white blood cell(WBC),and NEU counts was consistent across all GDM subtypes.What are the implications for public health practice?Early pregnancy hematological parameters are associated with the risk of GDM. 展开更多
关键词 PREGNANCY INFLAMMATION DIABETES
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Effects of greenness on preterm birth: A national longitudinal study of 3.7 million singleton births 被引量:4
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作者 Lina Zhang Shuyan Shi +17 位作者 Shenpeng Wu Ying Yang Jihong Xu Ya Zhang Qiaomei Wang Haiping Shen Yiping Zhang Donghai Yan Zuoqi Peng Cong Liu Weidong Wang Yixuan Jiang Su Shi Renjie Chen Haidong Kan Yuan He Xia Meng Xu Ma 《The Innovation》 2022年第3期57-63,共7页
Exposure to greenness may lead to a wide range of beneficial health outcomes.However,the effects of greenness on preterm birth(PTB)are inconsistent,and limited studies have focused on the subcategories of PTB.A total ... Exposure to greenness may lead to a wide range of beneficial health outcomes.However,the effects of greenness on preterm birth(PTB)are inconsistent,and limited studies have focused on the subcategories of PTB.A total of 3,751,672 singleton births from a national birth cohort in China's Mainland were included in this study.Greenness was estimated using the satellitebased Normalized Difference Vegetation Index(NDVI)and Enhanced Vegetation Index with 500-m and 1,000-m buffers around participants’addresses.The subcategories of PTB(20-36 weeks)included extremely PTB(EPTB,20-27 weeks). 展开更多
关键词 MAINLAND BIRTH inconsistent
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Pedigree analysis of a POLD1 germline mutation in urothelial carcinoma shows a close association between different mutation burdens and overall survival 被引量:1
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作者 Yejinpeng Wang Lingao Ju +5 位作者 Zicheng Guo Kaiyu Qian Hongbo Chen Yi Zhang Yu Xiao Xinghuan Wang 《Cellular & Molecular Immunology》 SCIE CAS CSCD 2021年第3期767-769,共3页
Bladder cancer(BCa)is the ninth most frequently diagnosed tumor worldwide,and smoking remains a major risk faaor.BCa is divided into nonmuscle invasive bladder cancer(NMIBC)and muscle invasive bladder cancer(MIBC).1 N... Bladder cancer(BCa)is the ninth most frequently diagnosed tumor worldwide,and smoking remains a major risk faaor.BCa is divided into nonmuscle invasive bladder cancer(NMIBC)and muscle invasive bladder cancer(MIBC).1 NMIBC accounts for 70-80% of all BCa cases,its recurrence rate is high,and 20-30% of NMIBC patients progress to MIBC. 展开更多
关键词 BLADDER CANCER frequent
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Improved air quality and reduced burden of preterm birth in China:2013–2017 被引量:2
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作者 Yixuan Jiang Yuan He +23 位作者 Shenpeng Wu Renjie Chen Ying Yang Jihong Xu Ya Zhang Qiaomei Wang Haiping Shen Yiping Zhang Donghai Yan Zuoqi Peng Xudong Dong Hongping Zhang Lifang Jiang Huichu Li Yixiang Zhu Cong Liu Weidong Wang Xia Meng Tao Pei Ci Song Aaron Cohen Xu Ma Jing Cai Haidong Kan 《Science Bulletin》 SCIE EI CSCD 2022年第9期879-882,M0003,共5页
Preterm birth(PTB)is a leading cause of perinatal mortality and morbidity worldwide[1].Since maternal and fetal health protection has been included in the United Nations Sustainable Development Goals,identification of... Preterm birth(PTB)is a leading cause of perinatal mortality and morbidity worldwide[1].Since maternal and fetal health protection has been included in the United Nations Sustainable Development Goals,identification of modifiable risk factors for PTB is particularly crucial.The Global Burden of Disease(GBD)Study 2019 recognized fine particulate matter(PM2.5)pollution as a risk factor for decreased gestational age and low birth weight. 展开更多
关键词 POLLUTION 空气质量改善 疾病负担
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Comparative metagenomic analysis of the vaginal microbiome in healthy women
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作者 Fei Liu Yingshun Zhou +4 位作者 Lisi Zhu Zhiyi Wang LiangKun Ma Yuan He Pengcheng Fu 《Synthetic and Systems Biotechnology》 SCIE 2021年第2期77-84,共8页
The composition of these vaginal microbiome has a significant impact on women’s health.However,few studies have characterized the vaginal microbiome of healthy Chinese women using metagenomic sequencing.Here,we carri... The composition of these vaginal microbiome has a significant impact on women’s health.However,few studies have characterized the vaginal microbiome of healthy Chinese women using metagenomic sequencing.Here,we carried out a comparative metagenomic analysis to survey taxonomic,functional levels,and microbial communities’genome content in healthy women’s vaginal microbiome.Overall,we observed a total of 111 species,including all dominant vaginal Lactobacillus species,such as L.iners,L.crispatus,L.gasseri,and L.jensenii.Unlike microbial taxa,several pathways were ubiquitous and prevalent across individuals,including adenosine ribonucleotides de novo biosynthesis and pyruvate fermentation to acetate and lactate Ⅱ.Notably,our diversity analysis confirmed a significant difference in healthy women from different ethnic groups.Moreover,we binned vaginal assemblies into 62 high-quality genomes,including 9 L.iners,7 A.vaginae,5 L.jensenii,and 5 L.crispatus.We identified the pan and core genomes of L.iners and A.vaginae and revealed the genetic diversity.Primary differences between strains were the hypothetical genes and mobile element-like genes.Our results provide a framework for understanding the implications of the female reproductive tract’s composition and functional potential and highlight the importance of genome-resolved metagenomic analysis to further understand the human vaginal microbiome. 展开更多
关键词 Vaginal microbiome METAGENOME Metabolic pathways GENOME STRAINS
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