Atherosclerotic coronary artery disease(CAD) comprises a broad spectrum of clinical entities that include asymptomatic subclinical atherosclerosis and its clinical complications, such as angina pectoris, myocardial in...Atherosclerotic coronary artery disease(CAD) comprises a broad spectrum of clinical entities that include asymptomatic subclinical atherosclerosis and its clinical complications, such as angina pectoris, myocardial infarction(MI) and sudden cardiac death. CAD continues to be the leading cause of death in industrialized society. The long-recognized familial clustering of CAD suggests that genetics plays a central role in its development, with the heritability of CAD and MI estimated at approximately 50% to 60%. Understanding the genetic architecture of CAD and MI has proven to be difficult and costly due to the heterogeneity of clinical CAD and the underlying multi-decade complex pathophysiological processes that involve both genetic and environmental interactions. This review describes the clinical heterogeneity of CAD and MI to clarify the disease spectrum in genetic studies, provides a brief overview of the historical understanding and estimation of the heritability of CAD and MI, recounts major gene discoveries of potential causal mutations in familial CAD and MI, summarizes CAD and MIassociated genetic variants identified using candidate gene approaches and genome-wide association studies(GWAS), and summarizes the current status of the construction and validations of genetic risk scores for lifetime risk prediction and guidance for preventive strategies. Potential protective genetic factors against the development of CAD and MI are also discussed. Finally, GWAS have identified multiple genetic factors associated with an increased risk of in-stent restenosis following stent placement for obstructive CAD. This review will also address genetic factors associated with in-stent restenosis, which may ultimately guide clinical decision-making regarding revascularization strategies for patients with CAD and MI.展开更多
Inflammatory bowel disease (IBD) is a chronic and heterogeneous intestinal inflammatory disorder. The medical management of IBD aims for long-lasting disease remission to prevent complications and disease progression....Inflammatory bowel disease (IBD) is a chronic and heterogeneous intestinal inflammatory disorder. The medical management of IBD aims for long-lasting disease remission to prevent complications and disease progression. Early introduction of immunosuppression forms the mainstay of medical IBD management. Large inter-individual variability in drug responses, in terms of both efficacy and toxicity, leads to high rates of therapeutic failure in the management of IBD. Better patient stratification is needed to maximize patient benefit and minimize the harm caused by adverse events. Pre-treatment pharmacogenetic testing has the potential to optimize drug selection and dose, and to minimize harm caused by adverse drug reactions. In addition, optimizing the use of cheap conventional drugs, and avoiding expensive ineffective drugs, will lead to a significant reduction in costs. Genetic variation in both TPMT and NUDT15, genes involved in thiopurine metabolism, is associated to an increased risk of thiopurine-induced myelosuppression. Moreover, specific HLA haplotypes confer risk to thiopurine-induced pancreatitis and to immunogenicity to tumor necrosis factor-antagonists, respectively. Falling costs and increased availability of genetic tests allow for the incorporation of pre-treatment genetic tests into clinical IBD management guidelines. In this paper, we review clinically useful pharmacogenetic associations for individualized treatment of patients with IBD and discuss the path from identification of a predictive pharmacogenetic marker to implementation into IBD clinical care.展开更多
AIM To investigate the regulation of Myopalladin(Mypn) and identify its gene network involved in restrictive cardiomyopathy(RCM).METHODS Gene expression values were measured in the heart of a large family of BXD recom...AIM To investigate the regulation of Myopalladin(Mypn) and identify its gene network involved in restrictive cardiomyopathy(RCM).METHODS Gene expression values were measured in the heart of a large family of BXD recombinant inbred(RI) mice derived from C57BL/6J and DBA/2J. The proteomics data were collected from Mypn knock-in and knock-out mice. Expression quantitative trait locus(eQ TL) mapping methods and gene enrichment analysis were used to identify Mypn regulation,gene pathway and co-expression networks.RESULTS A wide range of variation was found in expression of Mypn among BXD strains. We identified upstream genetic loci at chromosome 1 and 5 that modulate the expression of Mypn. Candidate genes within these loci include Ncoa2,Vcpip1,Sgk3,and Lgi2. We also identified 15 sarcomeric genes interacting with Mypn and constructed the gene network. Two novel members of this network(Syne1 and Myom1) have been confirmed at the protein level. Several members in this network are already known to relate to cardiomyopathy with some novel genes candidates that could be involved in RCM. CONCLUSION Using systematic genetics approach,we constructed Mypn co-expression networks that define the biological process categories within which similarly regulated genes function. Through this strategy we have found several novel genes that interact with Mypn that may play an important role in the development of RCM.展开更多
Understanding the level of genetic diversity in any population is an important requisite towards strategizing measures for conservation and improvement of stocks. This study focused on the assessment of phylogenetics ...Understanding the level of genetic diversity in any population is an important requisite towards strategizing measures for conservation and improvement of stocks. This study focused on the assessment of phylogenetics and molecular divergence of tilapia fish species obtained from two populations (Domita in South-South and Odeda in South-West, Nigeria) using the displacement loop (D-loop) and cytochrome b region of the mitochondrial deoxyribonucleic acid (mtDNA). A total of 28 samples (15 from South-South and 13 from South-West) were used for the genetic analysis. DNA was extracted from the tissue of all the samples using Quik-gDNATM miniPrep kit. The D-loop containing the hypervariable region was sequenced for all samples from the two populations, while cytochrome b (Cyt b) region of mtDNA was only sequenced for samples from South-South population. Chromatograms of the sequences were viewed and edited using Bioedit software. Multiple sequence alignment was carried out using molecular evolutionary genetic analysis (MEGA) software before subsequent genetic analyses. Phylogenetic analysis grouped the samples into two clusters based on population. Also, when the two mitochondrial regions were pooled together, they clustered into two major groups based on mitochondrial regions. Analysis of molecular variance (AMOVA) revealed 37.32% variation within population and 62.68% variation among population with a significant fixation index of 0.627 (p 0.05). The genetic distance inferred between D-loop regions of South-South and South-West populations was 0.243. Maternal lineage analysis revealed that the origin of tilapia fish from both populations could be traced to Oreochromis spirilus and Oreochromis leucostictus based on mitochondrial D-loop region. The findings of this study revealed molecular divergence among the tilapia populations and may serve as pivot information for the genetic improvement of this important species.展开更多
Potato is a plant that can be influenced by early blight disease. Early blight is one of the most destructive plant diseases, especially in the members of solanaceae family. This disease can reduce yield. Experiment d...Potato is a plant that can be influenced by early blight disease. Early blight is one of the most destructive plant diseases, especially in the members of solanaceae family. This disease can reduce yield. Experiment design was a factorial randomized complete design to evaluate the isolate pathogenic Alternaria solani in National Plant Gene Bank of Iran, during 2008-2009. This experiment was conducted with three replications, and the factors include test methods and three lines 9506, 10908-05 and 10908-18 with genotypes of Agria, Casmos and Desiree (susceptible) and Delta (resistant control). Analysis of variance table was based on the area under the disease progress curve, indicating the effects of the experimental methods;genotype and their interactions are significant at the 1% level. In greenhouse evaluation, the symptoms appeared on, the first day. In this method the area under the curve progression was noted in 10 times, but in vitro method, the symptoms of this evaluation appeared on the first or second day. The Evaluation was carried out after inoculation, and was noted 6 times. The results indicate that genotypes and lines are located in four different groups. In this case, line 9506 and Cosmos were quite sensitive to the surface, and Desiree, is located in a sensitive area. Line 10908-18 and Agria, located approximately at the level of resistance, and line 10908-05 and Delta, have been resistant surface.展开更多
Congenital anomalies of the hand are malformations occurring during the development of the human limb,and present as isolated disorders or as a part of a syndrome.During the last years,molecular analysis techniques ha...Congenital anomalies of the hand are malformations occurring during the development of the human limb,and present as isolated disorders or as a part of a syndrome.During the last years,molecular analysis techniques have offered increasing knowledge about the molecular basis of hand malformations.Disturbances in the signaling pathways during the development of the upper limb result in malformations of the upper extremity.At present,several genes have been identified as responsible for hand anomalies and other have been recognized as suspect genes related to them.Different and new high throughput methods have been introduced for the identification of the gene mutations.In the current editorial,we summarize concisely the current molecular status of isolated hand genetic disorders and the recent progress in molecular genetics,including the genes related to the disorder.This progress improves the knowledge of these disorders and has implications on genetic counselling and prenatal diagnosis.展开更多
Maize is cultivated extensively throughout the world and has the highest production among cereals.However,Northern corn leaf blight(NCLB)disease caused by Exherohilum turcicum,is the most devastating limiting factor o...Maize is cultivated extensively throughout the world and has the highest production among cereals.However,Northern corn leaf blight(NCLB)disease caused by Exherohilum turcicum,is the most devastating limiting factor of maize production.The disease causes immense losses to corn yield if it develops prior or during the tasseling and silking stages of crop development.It has a worldwide distribution and its development is favoured by cool to moderate temperatures with high relative humidity.The prevalence of the disease has increased in recent years and new races of the pathogen have been reported worldwide.The fungus E.turcicum is highly variable in nature.Though different management strategies have proved effective to reduce economic losses from NCLB,the development of varieties with resistance to E.turcicum is the most efficient and inexpensive way for disease management.Qualitative resistance for NCLB governed by Ht genes is a race-specific resistance which leads to a higher level of resistance.However,some Ht genes can easily become ineffective under the high pressure of virulent strains of the pathogen.Hence,it is imperative to understand and examine the consistency of the genomic locations of quantitative trait loci for resistance to NCLB in diverse maize populations.The breeding approaches for pyramiding resistant genes against E.turcicum in maize can impart NCLB resistance under high disease pressure environments.Furthermore,the genome editing approaches like CRISPR-cas9 and RNAi can also prove vital for developing NCLB resistant maize cultivars.As such this review delivers emphasis on the importance and current status of the disease,racial spectrum of the pathogen,genetic nature and breeding approaches for resistance and management strategies of the disease in a sustainable manner.展开更多
Honglian type-cytoplasmic male sterility(HL-CMS)is caused by the inter-communication between the nucleus and mitochondria.However,the mechanisms by which sterility genes regulate metabolic alterations and changes in m...Honglian type-cytoplasmic male sterility(HL-CMS)is caused by the inter-communication between the nucleus and mitochondria.However,the mechanisms by which sterility genes regulate metabolic alterations and changes in mitochondrial morphology in the pollen of HL-CMS remain unclear.In this study,we compared the morphological differences between the pollen of the male sterile line YA and the near-isogenic line NIL-Rf6 using hematoxylin-eosin staining and 4ʹ,6-diamidino-2-phenylindole(DAPI)staining.HL-CMS is characterized by gametophytic sterility,where the aborted pollen grains are empty,and the tapetal layer remains intact.Transmission electron microscopy was employed to observe mitochondrial morphological changes at the microspore stage,revealing significant mitochondrial alterations,characterized by the formation of'large spherical mitochondria',occurred at the binucleate stage in the YA line.Additionally,metabolomics analysis revealed decreased levels of metabolites associated with the carbohydrate and flavonoid pathways.Notably,the decrease in flavonoids was found to contribute to an elevation in reactive oxygen species(ROS)levels.Therefore,we propose a model in which rice fertility is modulated by the levels of pollen carbohydrates and flavonoid metabolites,with impaired mitochondrial energy production and reduced flavonoid biosynthesis as the main causes of ROS accumulation and pollen abortion in rice.展开更多
Traumatic brain injury(TBI)is a public health problem with an undue economic burden that impacts nearly every age,ethnic,and gender group across the globe(Capizzi et al.,2020).TBIs are often sustained during a dynamic...Traumatic brain injury(TBI)is a public health problem with an undue economic burden that impacts nearly every age,ethnic,and gender group across the globe(Capizzi et al.,2020).TBIs are often sustained during a dynamic range of exposures to energetic environmental forces and as such outcomes are typically heterogeneous regarding severity and pathology(Capizzi et al.,2020).展开更多
Reproductive hormones associated with the hypothalamic-pituitary-gonadal(HPG)axis are closely linked to bone homeostasis.In this study,we demonstrate that Gonadotropin inhibitory hormone(GnIH,one of the key reproducti...Reproductive hormones associated with the hypothalamic-pituitary-gonadal(HPG)axis are closely linked to bone homeostasis.In this study,we demonstrate that Gonadotropin inhibitory hormone(GnIH,one of the key reproductive hormones upstream of the HPG axis)plays an indispensable role in regulating bone homeostasis and maintaining bone mass.We find that deficiency of GnIH or its receptor Gpr147 leads to a significant reduction in bone mineral density(BMD)in mice primarily by enhancement of osteoclast activation in vivo and in vitro.Mechanistically,GnIH/Gpr147 inhibits osteoclastogenesis by the PI3K/AKT,MAPK,NF-κB and Nfatc1 signaling pathways.Furthermore,GnIH treatment was able to alleviate bone loss in aging,ovariectomy(OVX)or LPS-induced mice.Moreover,the therapy using green light promotes the release of GnIH and rescues OVX-induced bone loss.In humans,serum GnIH increases and bone resorption markers decrease after green light exposure.Therefore,our study elucidates that GnIH plays an important role in maintaining bone homeostasis via modulating osteoclast differentiation and demonstrates the potential of GnIH therapy or green light therapy in preventing osteoporosis.展开更多
In this editorial,we highlight the study by Xiao et al.Despite progress in the management of diabetic foot ulcers(DFUs),impaired wound healing remains a significant clinical challenge.Recent studies have highlighted t...In this editorial,we highlight the study by Xiao et al.Despite progress in the management of diabetic foot ulcers(DFUs),impaired wound healing remains a significant clinical challenge.Recent studies have highlighted the critical role of epigenetic modifications in diabetic wound healing,with particular emphasis on DNA and RNA methylation pathways.This editorial discusses the findings of Xiao et al,who identified the Wilms tumor 1-associated protein(WTAP)-DNA methyltransferase 1(DNMT1)axis as a pivotal regulator of endothelial dys-function in DFUs.WTAP,a regulatory subunit of N6-methyladenosine(m6A)methyltransferase,is upregulated under high-glucose conditions and drives the excessive expression of DNMT1 via m6A modification.This contributes to im-paired angiogenesis,reduced cell viability,and delayed wound closure.WTAP knockdown restored endothelial function and significantly improved wound healing in a diabetic mouse model.Furthermore,DNMT1 overexpression ab-rogated the benefits of WTAP suppression,confirming its downstream effector role.Thus,targeting the WTAP-DNMT1 axis provides a new avenue for DFU management.Moreover,epigenetic interventions that modulate both the m6A and RNA methylation pathways could restore endothelial function and enhance tissue repair in patients with diabetes.展开更多
Morpho-physiological evaluation of a crop’s genetic resources is necessary to find possible genotypes to include in breeding initiatives.The objective of this study was to identify heat-tolerant wheat genotypes among...Morpho-physiological evaluation of a crop’s genetic resources is necessary to find possible genotypes to include in breeding initiatives.The objective of this study was to identify heat-tolerant wheat genotypes among 36 mutant lines using morpho-physiological indices.Seedlings of mutant lines and check varieties were grown under both normal(control)and heat-stress conditions in growth chambers.Data were recorded on root-shoot parameters(length,fresh weight,dry weight,and ratio),relative water content(RWC),stability of cell membrane,pigment content,and chlorophyll fluorescence.Two-way analysis of variance showed significant(p<0.01,p<0.001)variation among 15 morpho-physiological features in both growing conditions.Correlation studies showed that pigment-specific indices(total chl,chl a,chl b,carotenoid,Fv/Fm—chlorophyll fluorescence)had significant positive correlations with rootshoot fresh weight(RFW,SFW)and root-shoot dry weight(RDW,SDW),and negative association with relative water content,stability of cell membrane at both conditions.Hierarchical cluster analysis revealed three primary clusters where cluster III(18 genotypes)showed minimal changes in studied characters than cluster I(11 genotypes)and cluster II(13 genotypes).Results obtained from this study revealed that the identified heat-sensitive(30-2 SSH)and heat-tolerant genotypes(27-2(4),29-2(2),and 30-2 SSH)of wheat might provide useful breeding materials for enhancing wheat yield even more in this period of uncertain climate change.展开更多
Indian mustard is recognized as a resilient and economically important oilseed crop.However,its potential remains untapped due to the limited availability of short-duration,high-yielding varieties capable of out-compe...Indian mustard is recognized as a resilient and economically important oilseed crop.However,its potential remains untapped due to the limited availability of short-duration,high-yielding varieties capable of out-competing other rabi crops.Considering this notion,we have evaluated twenty-one F_(2) and six BC1F1 populations derived from seven diversified parents of Brassica juncea following a Randomized Complete Block Design at Sher-e-Bangla Agricultural University.Based on key agronomic traits,the genetic components,heterosis,inbreeding depression,and gene action were studied to select early maturing and high-yielding populations.The percentage of heterosis was manifested in various cross-combinations,including P4×P6(91.45%for yield per plant)and P5×P6(28.52%for thousand seed weight),emerging as promising candidates for increasing productivity while managing negative inbreeding effects.Conversely,significant inbreeding depression was noted in traits like days to siliquae maturity and yield,particularly in crosses,P1×P2(6.29%)and P3×P5(21.74%),underscoring the need for careful selection in breeding programs to mitigate these effects.Variance analysis indicated that both additive and non-additive genetic interactions play a pivotal role in the inheritance patterns of the traits of interest.Among the six backcrosses,one promising line was(P5×P6)×P5,demonstrating early maturity(107.00 DAS)with improved seed yield(12.47 g).This combination exhibited the potential for enhancing the adaptability and productivity by maintaining the maturity index and accelerating yield.Furthermore,significant phenotypic variation across yield-contributing traits was notable,whereas thousand seed weight and yield per plant showed high broad-sense and narrow-sense of heritability.Besides,positive correlations between seed yield and its attributing traits were noted,suggesting potential avenues for selection breeding.Collectively,the ob-tained findings enhance the understanding of genetic mechanisms underlying heterosis and inbreeding depres-sion in B.juncea,providing insights and effective strategies for developing superior cultivars with optimized agronomic traits.展开更多
Inflammatory bowel disease(IBD)represents a significant disease burden marked by chronic inflammation and complications that adversely affect patients’quality of life.Effective diagnostic strategies involve clinical ...Inflammatory bowel disease(IBD)represents a significant disease burden marked by chronic inflammation and complications that adversely affect patients’quality of life.Effective diagnostic strategies involve clinical assessments,endoscopic evaluations,imaging studies,and biomarker testing,where early diagnosis is essential for effective management and prevention of long-term complications,highlighting the need for continual advancements in diagnostic methods.The intricate interplay between genetic factors and the outcomes of biological therapy is of critical importance.Unraveling the genetic determinants that influence responses and failures to biological therapy holds significant promise for optimizing treatment strategies for patients with IBD on biologics.Through an indepth examination of current literature,this review article synthesizes critical genetic markers associated with therapeutic efficacy and resistance in IBD.Understanding these genetic actors paves the way for personalized approaches,informing clinicians on predicting,tailoring,and enhancing the effectiveness of biological therapies for improved outcomes in patients with IBD.展开更多
We used fast chlorophyll fluorescence transients(OJIP) to study provenance-related differences in photosynthetic performance and the magnitude of day-to-day chlorophyll fluorescence(ChlF) variation in northern(67°...We used fast chlorophyll fluorescence transients(OJIP) to study provenance-related differences in photosynthetic performance and the magnitude of day-to-day chlorophyll fluorescence(ChlF) variation in northern(67°N)and southern(62°N) silver birches in a common garden at62°N.ChlF transients were measured five times during two weeks in the middle of summer to avoid seasonal variation.Differences in growth and leaf morphological traits between the provenances were also examined.The northern trees had higher chlorophyll content,larger leaf areas,and higher leaf fresh and dry mass than the southern trees,but the leaf mass per area did not differ between the provenances.The southern trees were taller and showed higher annual shoot growth than the northern trees.For all the ChlF parameters,day-to-day variation was significant and followed the same pattern for both provenances with no significant provenance ×day interaction,suggesting a similar response to environmental variation.The northern provenance had higher values in parameters related to the reduction of end electron acceptors at the Photosystem I(PSI) acceptor side as probed by ChlF.This and higher values for performance indices PI_(abs) and PI_(tot) in northern than in southern trees suggest higher photosynthetic performance of northern trees in line with the latitudinal compensation strategy.Provenance differences in these parameters increased towards the end of the measurement period,suggesting preparation for earlier growth cessation in northern trees triggered by the shortening day length.The study shows that provenance differences in ChlF can be relatively stable regardless of environmental variation but might be influenced by physiological alterations in preparation for future changes in environmental conditions.展开更多
Recent research has increasingly highlighted the potential oncogenic effects of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)infection within the gastrointestinal tract.Growing evidence suggests that SAR...Recent research has increasingly highlighted the potential oncogenic effects of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)infection within the gastrointestinal tract.Growing evidence suggests that SARS-CoV-2 may contribute to the development of gastrointestinal malignancies through several mechanisms,including sustained chronic inflammation,disruption of normal cellular homeostasis,and potential viral integration into host cells.These pathological processes have the potential to dysregulate critical cellular pathways,thereby promoting cancer development in vulnerable populations.A thorough understanding of how SARS-CoV-2 interacts with the development of gastro-intestinal cancer is essential for optimizing patient care and establishing compre-hensive,long-term monitoring protocols.This review highlighted the pressing need for ongoing research into the complex relationship between SARS-CoV-2 infection and the risk of gastrointestinal cancer.展开更多
In recent years, traditional rice landraces have gained increasing attention among consumers, scientists, and nutritionists because of their nutritional and therapeutic value. The diverse rice gene pool of the Indian ...In recent years, traditional rice landraces have gained increasing attention among consumers, scientists, and nutritionists because of their nutritional and therapeutic value. The diverse rice gene pool of the Indian subcontinent is bestowed with indigenous rice types augmented with nutrients and phytochemicals. Landraces high in resistant starch and dietary fiber contribute to gut health and help prevent gastrointestinal disorders, whereas those with high-quality protein contents, such as glutelin and lysine, all-trans retinoic acid, as well as iron and zinc contents(even in polished rice), play a vital role in the alleviation of malnutrition and hidden hunger. Metabolomic studies have revealed the presence of novel bioactive molecules, including tocols(e.g., gamma-tocotrienol and alpha-tocopherol), phytosterols(e.g., campestrol, beta-sitosterol, and stigmasterol), phenolic acids(e.g., 2-methoxy-4-vinylphenol, 4-vinylphenol, 3,5-di-tert-butylphenol, 2,4-di-tert-butylphenol, ionol, and 2,6-di-tert-butylphenol), flavonoids [e.g., flavonolignans tricin 4′-O-(threo-β-guaiacylglyceryl) ether and tricin 4′-O-(erythro-β-guaiacylglyceryl) ether], anthocyanins(e.g., delphinidin and cyanidin), carotenoids(e.g., 7,7′,8,8′-tetrahydrolycopene and 1-hydroxylycopene), diterpenoids(e.g., sugiol), vitamin D3(a secosteroid), and bioactive vitamin D(e.g., calcitriol). These bioactive phytochemicals endow Indian rice landraces, rich in antioxidants, with antiphlogistic, antineoplastic, cardiac risk preventive, antiviral, and antitubercular activities, confirming their use in traditional Indian medicine. Furthermore, Indian landraces with a low glycemic index may benefit the Asian Indian phenotype, which is characterized by clinical anomalies such as insulin resistance, dyslipidemia(reduced high-density lipoprotein levels), and high dietary glycemic load. Therefore, the conservation of India's traditional rice varieties is vital for both sustainable agriculture and improving global health.展开更多
BACKGROUND Cirrhosis is a progressive condition characterized by fibrosis that can lead to severe complications and increased mortality.The mac-2 binding protein glyco-sylation isomer(M2BPGi)is a prominent biomarker f...BACKGROUND Cirrhosis is a progressive condition characterized by fibrosis that can lead to severe complications and increased mortality.The mac-2 binding protein glyco-sylation isomer(M2BPGi)is a prominent biomarker for predicting hepatocellular carcinoma(HCC)and cirrhosis-induced esophageal varices(EV).AIM To investigate thresholds of M2BPGi associated with HCC,EV,and decomp-ensation in patients with cirrhosis.METHODS This was a prospective study.A total of 153 patients with cirrhosis who met the inclusion criteria were enrolled.The patients were diagnosed with HCC and EV according to the Baveno VII and European Association for the Study of the Liver guidelines.Baseline serum M2BPGi levels were assessed along with other routine tests.The data analysis aimed to determine the cutoff values of M2BPGi for pre-dicting EV and HCC.RESULTS In the study 85.6%of patients were Child-Pugh B and C.M2BPGi mean cutoff index was 7.1±3.7,showing no significant etiological differences.However,M2BPGi levels varied significantly among Child-Pugh classes,EV classifications,and between patients with and without HCC(P<0.01).M2BPGi cutoff values for predicting HCC,EV,and decompensated cirrhosis were 6.50,6.64,and 5.25,respectively.Mul-tivariate analysis confirmed M2BPGi as an independent risk factor for EV[adjusted odds ratio(aOR):1.3,95%CI:1.08-1.64]and liver decompensation(aOR:2.11,95%CI:1.37-3.83).Area under the curve of M2BPGi for HCC differ-entiation was 0.71.An algorithm combining alpha-fetoprotein(AFP)and M2BPGi detected 26 of 28 HCC cases with 98.04%accuracy vs 10 cases by AFP alone.CONCLUSION Serum M2BPGi predicted cirrhosis complications,including decompensation and varices,especially in HCC.Combined with AFP,it enhanced HCC detection.Future liver biopsy studies are needed for tissue confirmation.展开更多
BACKGROUND The Mac-2 binding protein glycosylated isomer(M2BPGi)is a serum marker for fibrosis that correlates with the fibrosis stages in various liver diseases.AIM To examine the M2BPGi’s threshold for staging fibr...BACKGROUND The Mac-2 binding protein glycosylated isomer(M2BPGi)is a serum marker for fibrosis that correlates with the fibrosis stages in various liver diseases.AIM To examine the M2BPGi’s threshold for staging fibrosis in patients with chronic hepatitis B(CHB),and its changes during treatment.METHODS This was a prospective,longitudinal study.A total of 348 eligible patients were recruited from the Hepatology Department,Medic Medical Center between March 2020 and December 2023.Liver enzyme tests,platelet counts,M2BPGi levels,and FibroScan were conducted at baseline and at 3-month intervals until six months post-treatment.Correlation plots of M2BPGi,FibroScan,and the other parameters were generated.Receiver operating characteristic curves were constructed for M2BPGi and the other parameters to evaluate their performance.RESULTS M2BPGi levels correlated well with FibroScan results and increased as the fibrosis stage advanced.The median M2BPGi levels at the different stages of fibrosis showed statistically significant differences.The cut-off values of M2BPGi for diagnosing significant fibrosis(F≥2),advanced fibrosis(F3),and cirrhosis(F4)were determined to be 1.08,1.4,and 1.52,respectively.In the context of fibrosis regression in CHB patients during the first 6-month of treatment,M2BPGi levels appeared to decrease before this pattern occurred in the FibroScan results.CONCLUSION M2BPGi levels were strongly correlated with FibroScan.M2BPGi can be used to assess liver fibrosis,and to serve as a tool for monitoring fibrosis regression in CHB patients undergoing treatment.展开更多
Global warming is making plants more susceptible to heat stress.Hence,adjustments to crop production systems are required for global food security.Heat stress(HS)poses a threat to the quality of ecosystems and global ...Global warming is making plants more susceptible to heat stress.Hence,adjustments to crop production systems are required for global food security.Heat stress(HS)poses a threat to the quality of ecosystems and global food security due to its adverse effects on plant development.The degree to which HS affects physiological disruptions,physical harm,and biochemical changes at various growth stages directly correlates with its effects on physiological functions,plant growth,and crop production.One promising approach is soil modification using biochar,which enhances soil health and promotes the development of microbial communities,ultimately improving plant heat tolerance.Biochar enhances soil structure,improves moisture retention,and increases nutrient availability in hot weather,thereby promoting plant growth and enhancing crop yields.Additionally,biochar,with its porous structure and ability to provide a liming effect,increases the diversity and activity of soil microbes,thereby fostering advantageous symbiotic relationships.These microbial communities support nutrient cycling,root growth,and general soil health,strengthening biochar’s position as a long-term solution for climate-resilient farming.Earlier research concentrated on the connection between biochar and heat stress or microbial populations;however,this review uniquely combines all three elements,providing a fresh viewpoint on their interrelated functions in enhancing plant adaptability.Furthermore,this study demonstrates the potential of biochar as a sustainable component for improving soil and supporting crops that adapt to heat stress.It examines the processes underlying these interactions and provides recommendations for future research strategies.展开更多
基金NC TraC S to Dai XNo.550KR91403+1 种基金NIH T32 to Wiernek SNo.HL083828-04
文摘Atherosclerotic coronary artery disease(CAD) comprises a broad spectrum of clinical entities that include asymptomatic subclinical atherosclerosis and its clinical complications, such as angina pectoris, myocardial infarction(MI) and sudden cardiac death. CAD continues to be the leading cause of death in industrialized society. The long-recognized familial clustering of CAD suggests that genetics plays a central role in its development, with the heritability of CAD and MI estimated at approximately 50% to 60%. Understanding the genetic architecture of CAD and MI has proven to be difficult and costly due to the heterogeneity of clinical CAD and the underlying multi-decade complex pathophysiological processes that involve both genetic and environmental interactions. This review describes the clinical heterogeneity of CAD and MI to clarify the disease spectrum in genetic studies, provides a brief overview of the historical understanding and estimation of the heritability of CAD and MI, recounts major gene discoveries of potential causal mutations in familial CAD and MI, summarizes CAD and MIassociated genetic variants identified using candidate gene approaches and genome-wide association studies(GWAS), and summarizes the current status of the construction and validations of genetic risk scores for lifetime risk prediction and guidance for preventive strategies. Potential protective genetic factors against the development of CAD and MI are also discussed. Finally, GWAS have identified multiple genetic factors associated with an increased risk of in-stent restenosis following stent placement for obstructive CAD. This review will also address genetic factors associated with in-stent restenosis, which may ultimately guide clinical decision-making regarding revascularization strategies for patients with CAD and MI.
文摘Inflammatory bowel disease (IBD) is a chronic and heterogeneous intestinal inflammatory disorder. The medical management of IBD aims for long-lasting disease remission to prevent complications and disease progression. Early introduction of immunosuppression forms the mainstay of medical IBD management. Large inter-individual variability in drug responses, in terms of both efficacy and toxicity, leads to high rates of therapeutic failure in the management of IBD. Better patient stratification is needed to maximize patient benefit and minimize the harm caused by adverse events. Pre-treatment pharmacogenetic testing has the potential to optimize drug selection and dose, and to minimize harm caused by adverse drug reactions. In addition, optimizing the use of cheap conventional drugs, and avoiding expensive ineffective drugs, will lead to a significant reduction in costs. Genetic variation in both TPMT and NUDT15, genes involved in thiopurine metabolism, is associated to an increased risk of thiopurine-induced myelosuppression. Moreover, specific HLA haplotypes confer risk to thiopurine-induced pancreatitis and to immunogenicity to tumor necrosis factor-antagonists, respectively. Falling costs and increased availability of genetic tests allow for the incorporation of pre-treatment genetic tests into clinical IBD management guidelines. In this paper, we review clinically useful pharmacogenetic associations for individualized treatment of patients with IBD and discuss the path from identification of a predictive pharmacogenetic marker to implementation into IBD clinical care.
基金Supported by National Institutes of Health,Nos.R01 HL128350(LL),R01 HL53392 and R01 HL087000(JAT)
文摘AIM To investigate the regulation of Myopalladin(Mypn) and identify its gene network involved in restrictive cardiomyopathy(RCM).METHODS Gene expression values were measured in the heart of a large family of BXD recombinant inbred(RI) mice derived from C57BL/6J and DBA/2J. The proteomics data were collected from Mypn knock-in and knock-out mice. Expression quantitative trait locus(eQ TL) mapping methods and gene enrichment analysis were used to identify Mypn regulation,gene pathway and co-expression networks.RESULTS A wide range of variation was found in expression of Mypn among BXD strains. We identified upstream genetic loci at chromosome 1 and 5 that modulate the expression of Mypn. Candidate genes within these loci include Ncoa2,Vcpip1,Sgk3,and Lgi2. We also identified 15 sarcomeric genes interacting with Mypn and constructed the gene network. Two novel members of this network(Syne1 and Myom1) have been confirmed at the protein level. Several members in this network are already known to relate to cardiomyopathy with some novel genes candidates that could be involved in RCM. CONCLUSION Using systematic genetics approach,we constructed Mypn co-expression networks that define the biological process categories within which similarly regulated genes function. Through this strategy we have found several novel genes that interact with Mypn that may play an important role in the development of RCM.
文摘Understanding the level of genetic diversity in any population is an important requisite towards strategizing measures for conservation and improvement of stocks. This study focused on the assessment of phylogenetics and molecular divergence of tilapia fish species obtained from two populations (Domita in South-South and Odeda in South-West, Nigeria) using the displacement loop (D-loop) and cytochrome b region of the mitochondrial deoxyribonucleic acid (mtDNA). A total of 28 samples (15 from South-South and 13 from South-West) were used for the genetic analysis. DNA was extracted from the tissue of all the samples using Quik-gDNATM miniPrep kit. The D-loop containing the hypervariable region was sequenced for all samples from the two populations, while cytochrome b (Cyt b) region of mtDNA was only sequenced for samples from South-South population. Chromatograms of the sequences were viewed and edited using Bioedit software. Multiple sequence alignment was carried out using molecular evolutionary genetic analysis (MEGA) software before subsequent genetic analyses. Phylogenetic analysis grouped the samples into two clusters based on population. Also, when the two mitochondrial regions were pooled together, they clustered into two major groups based on mitochondrial regions. Analysis of molecular variance (AMOVA) revealed 37.32% variation within population and 62.68% variation among population with a significant fixation index of 0.627 (p 0.05). The genetic distance inferred between D-loop regions of South-South and South-West populations was 0.243. Maternal lineage analysis revealed that the origin of tilapia fish from both populations could be traced to Oreochromis spirilus and Oreochromis leucostictus based on mitochondrial D-loop region. The findings of this study revealed molecular divergence among the tilapia populations and may serve as pivot information for the genetic improvement of this important species.
文摘Potato is a plant that can be influenced by early blight disease. Early blight is one of the most destructive plant diseases, especially in the members of solanaceae family. This disease can reduce yield. Experiment design was a factorial randomized complete design to evaluate the isolate pathogenic Alternaria solani in National Plant Gene Bank of Iran, during 2008-2009. This experiment was conducted with three replications, and the factors include test methods and three lines 9506, 10908-05 and 10908-18 with genotypes of Agria, Casmos and Desiree (susceptible) and Delta (resistant control). Analysis of variance table was based on the area under the disease progress curve, indicating the effects of the experimental methods;genotype and their interactions are significant at the 1% level. In greenhouse evaluation, the symptoms appeared on, the first day. In this method the area under the curve progression was noted in 10 times, but in vitro method, the symptoms of this evaluation appeared on the first or second day. The Evaluation was carried out after inoculation, and was noted 6 times. The results indicate that genotypes and lines are located in four different groups. In this case, line 9506 and Cosmos were quite sensitive to the surface, and Desiree, is located in a sensitive area. Line 10908-18 and Agria, located approximately at the level of resistance, and line 10908-05 and Delta, have been resistant surface.
文摘Congenital anomalies of the hand are malformations occurring during the development of the human limb,and present as isolated disorders or as a part of a syndrome.During the last years,molecular analysis techniques have offered increasing knowledge about the molecular basis of hand malformations.Disturbances in the signaling pathways during the development of the upper limb result in malformations of the upper extremity.At present,several genes have been identified as responsible for hand anomalies and other have been recognized as suspect genes related to them.Different and new high throughput methods have been introduced for the identification of the gene mutations.In the current editorial,we summarize concisely the current molecular status of isolated hand genetic disorders and the recent progress in molecular genetics,including the genes related to the disorder.This progress improves the knowledge of these disorders and has implications on genetic counselling and prenatal diagnosis.
文摘Maize is cultivated extensively throughout the world and has the highest production among cereals.However,Northern corn leaf blight(NCLB)disease caused by Exherohilum turcicum,is the most devastating limiting factor of maize production.The disease causes immense losses to corn yield if it develops prior or during the tasseling and silking stages of crop development.It has a worldwide distribution and its development is favoured by cool to moderate temperatures with high relative humidity.The prevalence of the disease has increased in recent years and new races of the pathogen have been reported worldwide.The fungus E.turcicum is highly variable in nature.Though different management strategies have proved effective to reduce economic losses from NCLB,the development of varieties with resistance to E.turcicum is the most efficient and inexpensive way for disease management.Qualitative resistance for NCLB governed by Ht genes is a race-specific resistance which leads to a higher level of resistance.However,some Ht genes can easily become ineffective under the high pressure of virulent strains of the pathogen.Hence,it is imperative to understand and examine the consistency of the genomic locations of quantitative trait loci for resistance to NCLB in diverse maize populations.The breeding approaches for pyramiding resistant genes against E.turcicum in maize can impart NCLB resistance under high disease pressure environments.Furthermore,the genome editing approaches like CRISPR-cas9 and RNAi can also prove vital for developing NCLB resistant maize cultivars.As such this review delivers emphasis on the importance and current status of the disease,racial spectrum of the pathogen,genetic nature and breeding approaches for resistance and management strategies of the disease in a sustainable manner.
基金supported by the National Natural Science Foundation of China(Grant No.32472185)the Key Research and Development Program of Hubei Province,China(Grant No.2022BFE003)the Hubei Agriculture Science and Technology Innovation Center program,and the National Rice Industry Technology System,China(Grant No.CARS-01-07).
文摘Honglian type-cytoplasmic male sterility(HL-CMS)is caused by the inter-communication between the nucleus and mitochondria.However,the mechanisms by which sterility genes regulate metabolic alterations and changes in mitochondrial morphology in the pollen of HL-CMS remain unclear.In this study,we compared the morphological differences between the pollen of the male sterile line YA and the near-isogenic line NIL-Rf6 using hematoxylin-eosin staining and 4ʹ,6-diamidino-2-phenylindole(DAPI)staining.HL-CMS is characterized by gametophytic sterility,where the aborted pollen grains are empty,and the tapetal layer remains intact.Transmission electron microscopy was employed to observe mitochondrial morphological changes at the microspore stage,revealing significant mitochondrial alterations,characterized by the formation of'large spherical mitochondria',occurred at the binucleate stage in the YA line.Additionally,metabolomics analysis revealed decreased levels of metabolites associated with the carbohydrate and flavonoid pathways.Notably,the decrease in flavonoids was found to contribute to an elevation in reactive oxygen species(ROS)levels.Therefore,we propose a model in which rice fertility is modulated by the levels of pollen carbohydrates and flavonoid metabolites,with impaired mitochondrial energy production and reduced flavonoid biosynthesis as the main causes of ROS accumulation and pollen abortion in rice.
文摘Traumatic brain injury(TBI)is a public health problem with an undue economic burden that impacts nearly every age,ethnic,and gender group across the globe(Capizzi et al.,2020).TBIs are often sustained during a dynamic range of exposures to energetic environmental forces and as such outcomes are typically heterogeneous regarding severity and pathology(Capizzi et al.,2020).
基金National Key Research and Development Program of China(2023YFB3810200 to J.L.)National Natural Science Foundation of China(92168204,82225030 to J.L.)Fundamental Research Funds for the Central Universities(22120210586 to J.L.)。
文摘Reproductive hormones associated with the hypothalamic-pituitary-gonadal(HPG)axis are closely linked to bone homeostasis.In this study,we demonstrate that Gonadotropin inhibitory hormone(GnIH,one of the key reproductive hormones upstream of the HPG axis)plays an indispensable role in regulating bone homeostasis and maintaining bone mass.We find that deficiency of GnIH or its receptor Gpr147 leads to a significant reduction in bone mineral density(BMD)in mice primarily by enhancement of osteoclast activation in vivo and in vitro.Mechanistically,GnIH/Gpr147 inhibits osteoclastogenesis by the PI3K/AKT,MAPK,NF-κB and Nfatc1 signaling pathways.Furthermore,GnIH treatment was able to alleviate bone loss in aging,ovariectomy(OVX)or LPS-induced mice.Moreover,the therapy using green light promotes the release of GnIH and rescues OVX-induced bone loss.In humans,serum GnIH increases and bone resorption markers decrease after green light exposure.Therefore,our study elucidates that GnIH plays an important role in maintaining bone homeostasis via modulating osteoclast differentiation and demonstrates the potential of GnIH therapy or green light therapy in preventing osteoporosis.
基金Supported by the Kuwait Foundation for the Advancement of Sciences and Dasman Diabetes Institute,No.RACB-2021-007.
文摘In this editorial,we highlight the study by Xiao et al.Despite progress in the management of diabetic foot ulcers(DFUs),impaired wound healing remains a significant clinical challenge.Recent studies have highlighted the critical role of epigenetic modifications in diabetic wound healing,with particular emphasis on DNA and RNA methylation pathways.This editorial discusses the findings of Xiao et al,who identified the Wilms tumor 1-associated protein(WTAP)-DNA methyltransferase 1(DNMT1)axis as a pivotal regulator of endothelial dys-function in DFUs.WTAP,a regulatory subunit of N6-methyladenosine(m6A)methyltransferase,is upregulated under high-glucose conditions and drives the excessive expression of DNMT1 via m6A modification.This contributes to im-paired angiogenesis,reduced cell viability,and delayed wound closure.WTAP knockdown restored endothelial function and significantly improved wound healing in a diabetic mouse model.Furthermore,DNMT1 overexpression ab-rogated the benefits of WTAP suppression,confirming its downstream effector role.Thus,targeting the WTAP-DNMT1 axis provides a new avenue for DFU management.Moreover,epigenetic interventions that modulate both the m6A and RNA methylation pathways could restore endothelial function and enhance tissue repair in patients with diabetes.
文摘Morpho-physiological evaluation of a crop’s genetic resources is necessary to find possible genotypes to include in breeding initiatives.The objective of this study was to identify heat-tolerant wheat genotypes among 36 mutant lines using morpho-physiological indices.Seedlings of mutant lines and check varieties were grown under both normal(control)and heat-stress conditions in growth chambers.Data were recorded on root-shoot parameters(length,fresh weight,dry weight,and ratio),relative water content(RWC),stability of cell membrane,pigment content,and chlorophyll fluorescence.Two-way analysis of variance showed significant(p<0.01,p<0.001)variation among 15 morpho-physiological features in both growing conditions.Correlation studies showed that pigment-specific indices(total chl,chl a,chl b,carotenoid,Fv/Fm—chlorophyll fluorescence)had significant positive correlations with rootshoot fresh weight(RFW,SFW)and root-shoot dry weight(RDW,SDW),and negative association with relative water content,stability of cell membrane at both conditions.Hierarchical cluster analysis revealed three primary clusters where cluster III(18 genotypes)showed minimal changes in studied characters than cluster I(11 genotypes)and cluster II(13 genotypes).Results obtained from this study revealed that the identified heat-sensitive(30-2 SSH)and heat-tolerant genotypes(27-2(4),29-2(2),and 30-2 SSH)of wheat might provide useful breeding materials for enhancing wheat yield even more in this period of uncertain climate change.
基金funded by Bangladesh Academy of Sciences(BAS),and Fund ID:BAS-USDA SAU CR02.
文摘Indian mustard is recognized as a resilient and economically important oilseed crop.However,its potential remains untapped due to the limited availability of short-duration,high-yielding varieties capable of out-competing other rabi crops.Considering this notion,we have evaluated twenty-one F_(2) and six BC1F1 populations derived from seven diversified parents of Brassica juncea following a Randomized Complete Block Design at Sher-e-Bangla Agricultural University.Based on key agronomic traits,the genetic components,heterosis,inbreeding depression,and gene action were studied to select early maturing and high-yielding populations.The percentage of heterosis was manifested in various cross-combinations,including P4×P6(91.45%for yield per plant)and P5×P6(28.52%for thousand seed weight),emerging as promising candidates for increasing productivity while managing negative inbreeding effects.Conversely,significant inbreeding depression was noted in traits like days to siliquae maturity and yield,particularly in crosses,P1×P2(6.29%)and P3×P5(21.74%),underscoring the need for careful selection in breeding programs to mitigate these effects.Variance analysis indicated that both additive and non-additive genetic interactions play a pivotal role in the inheritance patterns of the traits of interest.Among the six backcrosses,one promising line was(P5×P6)×P5,demonstrating early maturity(107.00 DAS)with improved seed yield(12.47 g).This combination exhibited the potential for enhancing the adaptability and productivity by maintaining the maturity index and accelerating yield.Furthermore,significant phenotypic variation across yield-contributing traits was notable,whereas thousand seed weight and yield per plant showed high broad-sense and narrow-sense of heritability.Besides,positive correlations between seed yield and its attributing traits were noted,suggesting potential avenues for selection breeding.Collectively,the ob-tained findings enhance the understanding of genetic mechanisms underlying heterosis and inbreeding depres-sion in B.juncea,providing insights and effective strategies for developing superior cultivars with optimized agronomic traits.
基金Supported by The European Union-Next Generation EU,through the National Recovery and Resilience Plan of the Republic of Bulgaria,No.BG-RRP-2.004-0008。
文摘Inflammatory bowel disease(IBD)represents a significant disease burden marked by chronic inflammation and complications that adversely affect patients’quality of life.Effective diagnostic strategies involve clinical assessments,endoscopic evaluations,imaging studies,and biomarker testing,where early diagnosis is essential for effective management and prevention of long-term complications,highlighting the need for continual advancements in diagnostic methods.The intricate interplay between genetic factors and the outcomes of biological therapy is of critical importance.Unraveling the genetic determinants that influence responses and failures to biological therapy holds significant promise for optimizing treatment strategies for patients with IBD on biologics.Through an indepth examination of current literature,this review article synthesizes critical genetic markers associated with therapeutic efficacy and resistance in IBD.Understanding these genetic actors paves the way for personalized approaches,informing clinicians on predicting,tailoring,and enhancing the effectiveness of biological therapies for improved outcomes in patients with IBD.
基金supported by the University of Eastern FinlandCzech University of Life Sciences doctoral research funding to O.A+5 种基金North Karelia Regional Fund to O.A (grant number 55232028)University of Eastern Finland(strategic fundingproject 931060)the Academy of Finland(C-NEUT,project number 347862)part of the Academy of Finland Flagship on Photonics Research and Innovation (PREIN) decision (320166)the Finnish National Plant Phenotyping Infrastructure (NaPPI/Biocenter Finland)
文摘We used fast chlorophyll fluorescence transients(OJIP) to study provenance-related differences in photosynthetic performance and the magnitude of day-to-day chlorophyll fluorescence(ChlF) variation in northern(67°N)and southern(62°N) silver birches in a common garden at62°N.ChlF transients were measured five times during two weeks in the middle of summer to avoid seasonal variation.Differences in growth and leaf morphological traits between the provenances were also examined.The northern trees had higher chlorophyll content,larger leaf areas,and higher leaf fresh and dry mass than the southern trees,but the leaf mass per area did not differ between the provenances.The southern trees were taller and showed higher annual shoot growth than the northern trees.For all the ChlF parameters,day-to-day variation was significant and followed the same pattern for both provenances with no significant provenance ×day interaction,suggesting a similar response to environmental variation.The northern provenance had higher values in parameters related to the reduction of end electron acceptors at the Photosystem I(PSI) acceptor side as probed by ChlF.This and higher values for performance indices PI_(abs) and PI_(tot) in northern than in southern trees suggest higher photosynthetic performance of northern trees in line with the latitudinal compensation strategy.Provenance differences in these parameters increased towards the end of the measurement period,suggesting preparation for earlier growth cessation in northern trees triggered by the shortening day length.The study shows that provenance differences in ChlF can be relatively stable regardless of environmental variation but might be influenced by physiological alterations in preparation for future changes in environmental conditions.
文摘Recent research has increasingly highlighted the potential oncogenic effects of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)infection within the gastrointestinal tract.Growing evidence suggests that SARS-CoV-2 may contribute to the development of gastrointestinal malignancies through several mechanisms,including sustained chronic inflammation,disruption of normal cellular homeostasis,and potential viral integration into host cells.These pathological processes have the potential to dysregulate critical cellular pathways,thereby promoting cancer development in vulnerable populations.A thorough understanding of how SARS-CoV-2 interacts with the development of gastro-intestinal cancer is essential for optimizing patient care and establishing compre-hensive,long-term monitoring protocols.This review highlighted the pressing need for ongoing research into the complex relationship between SARS-CoV-2 infection and the risk of gastrointestinal cancer.
文摘In recent years, traditional rice landraces have gained increasing attention among consumers, scientists, and nutritionists because of their nutritional and therapeutic value. The diverse rice gene pool of the Indian subcontinent is bestowed with indigenous rice types augmented with nutrients and phytochemicals. Landraces high in resistant starch and dietary fiber contribute to gut health and help prevent gastrointestinal disorders, whereas those with high-quality protein contents, such as glutelin and lysine, all-trans retinoic acid, as well as iron and zinc contents(even in polished rice), play a vital role in the alleviation of malnutrition and hidden hunger. Metabolomic studies have revealed the presence of novel bioactive molecules, including tocols(e.g., gamma-tocotrienol and alpha-tocopherol), phytosterols(e.g., campestrol, beta-sitosterol, and stigmasterol), phenolic acids(e.g., 2-methoxy-4-vinylphenol, 4-vinylphenol, 3,5-di-tert-butylphenol, 2,4-di-tert-butylphenol, ionol, and 2,6-di-tert-butylphenol), flavonoids [e.g., flavonolignans tricin 4′-O-(threo-β-guaiacylglyceryl) ether and tricin 4′-O-(erythro-β-guaiacylglyceryl) ether], anthocyanins(e.g., delphinidin and cyanidin), carotenoids(e.g., 7,7′,8,8′-tetrahydrolycopene and 1-hydroxylycopene), diterpenoids(e.g., sugiol), vitamin D3(a secosteroid), and bioactive vitamin D(e.g., calcitriol). These bioactive phytochemicals endow Indian rice landraces, rich in antioxidants, with antiphlogistic, antineoplastic, cardiac risk preventive, antiviral, and antitubercular activities, confirming their use in traditional Indian medicine. Furthermore, Indian landraces with a low glycemic index may benefit the Asian Indian phenotype, which is characterized by clinical anomalies such as insulin resistance, dyslipidemia(reduced high-density lipoprotein levels), and high dietary glycemic load. Therefore, the conservation of India's traditional rice varieties is vital for both sustainable agriculture and improving global health.
文摘BACKGROUND Cirrhosis is a progressive condition characterized by fibrosis that can lead to severe complications and increased mortality.The mac-2 binding protein glyco-sylation isomer(M2BPGi)is a prominent biomarker for predicting hepatocellular carcinoma(HCC)and cirrhosis-induced esophageal varices(EV).AIM To investigate thresholds of M2BPGi associated with HCC,EV,and decomp-ensation in patients with cirrhosis.METHODS This was a prospective study.A total of 153 patients with cirrhosis who met the inclusion criteria were enrolled.The patients were diagnosed with HCC and EV according to the Baveno VII and European Association for the Study of the Liver guidelines.Baseline serum M2BPGi levels were assessed along with other routine tests.The data analysis aimed to determine the cutoff values of M2BPGi for pre-dicting EV and HCC.RESULTS In the study 85.6%of patients were Child-Pugh B and C.M2BPGi mean cutoff index was 7.1±3.7,showing no significant etiological differences.However,M2BPGi levels varied significantly among Child-Pugh classes,EV classifications,and between patients with and without HCC(P<0.01).M2BPGi cutoff values for predicting HCC,EV,and decompensated cirrhosis were 6.50,6.64,and 5.25,respectively.Mul-tivariate analysis confirmed M2BPGi as an independent risk factor for EV[adjusted odds ratio(aOR):1.3,95%CI:1.08-1.64]and liver decompensation(aOR:2.11,95%CI:1.37-3.83).Area under the curve of M2BPGi for HCC differ-entiation was 0.71.An algorithm combining alpha-fetoprotein(AFP)and M2BPGi detected 26 of 28 HCC cases with 98.04%accuracy vs 10 cases by AFP alone.CONCLUSION Serum M2BPGi predicted cirrhosis complications,including decompensation and varices,especially in HCC.Combined with AFP,it enhanced HCC detection.Future liver biopsy studies are needed for tissue confirmation.
文摘BACKGROUND The Mac-2 binding protein glycosylated isomer(M2BPGi)is a serum marker for fibrosis that correlates with the fibrosis stages in various liver diseases.AIM To examine the M2BPGi’s threshold for staging fibrosis in patients with chronic hepatitis B(CHB),and its changes during treatment.METHODS This was a prospective,longitudinal study.A total of 348 eligible patients were recruited from the Hepatology Department,Medic Medical Center between March 2020 and December 2023.Liver enzyme tests,platelet counts,M2BPGi levels,and FibroScan were conducted at baseline and at 3-month intervals until six months post-treatment.Correlation plots of M2BPGi,FibroScan,and the other parameters were generated.Receiver operating characteristic curves were constructed for M2BPGi and the other parameters to evaluate their performance.RESULTS M2BPGi levels correlated well with FibroScan results and increased as the fibrosis stage advanced.The median M2BPGi levels at the different stages of fibrosis showed statistically significant differences.The cut-off values of M2BPGi for diagnosing significant fibrosis(F≥2),advanced fibrosis(F3),and cirrhosis(F4)were determined to be 1.08,1.4,and 1.52,respectively.In the context of fibrosis regression in CHB patients during the first 6-month of treatment,M2BPGi levels appeared to decrease before this pattern occurred in the FibroScan results.CONCLUSION M2BPGi levels were strongly correlated with FibroScan.M2BPGi can be used to assess liver fibrosis,and to serve as a tool for monitoring fibrosis regression in CHB patients undergoing treatment.
文摘Global warming is making plants more susceptible to heat stress.Hence,adjustments to crop production systems are required for global food security.Heat stress(HS)poses a threat to the quality of ecosystems and global food security due to its adverse effects on plant development.The degree to which HS affects physiological disruptions,physical harm,and biochemical changes at various growth stages directly correlates with its effects on physiological functions,plant growth,and crop production.One promising approach is soil modification using biochar,which enhances soil health and promotes the development of microbial communities,ultimately improving plant heat tolerance.Biochar enhances soil structure,improves moisture retention,and increases nutrient availability in hot weather,thereby promoting plant growth and enhancing crop yields.Additionally,biochar,with its porous structure and ability to provide a liming effect,increases the diversity and activity of soil microbes,thereby fostering advantageous symbiotic relationships.These microbial communities support nutrient cycling,root growth,and general soil health,strengthening biochar’s position as a long-term solution for climate-resilient farming.Earlier research concentrated on the connection between biochar and heat stress or microbial populations;however,this review uniquely combines all three elements,providing a fresh viewpoint on their interrelated functions in enhancing plant adaptability.Furthermore,this study demonstrates the potential of biochar as a sustainable component for improving soil and supporting crops that adapt to heat stress.It examines the processes underlying these interactions and provides recommendations for future research strategies.
