Utilization and transfer of nitrogen （N）in a strip intercropping system of garlic （Allium safivum L.） and broad bean （Vicia faba L.） have been investigated rarely. The objectives of this study were to quantify N...Utilization and transfer of nitrogen （N）in a strip intercropping system of garlic （Allium safivum L.） and broad bean （Vicia faba L.） have been investigated rarely. The objectives of this study were to quantify N uptake and utilization by intercropped broad bean and garlic and determine the magnitude of N transfer from broad bean to garlic. Field and pot trials were carried out in the Erhai Lake Basin in China using ^15N tracer applied to the soil or injected into broad bean plants. Strip intercropping of garlic and broad bean increased N absorption （47.2%） compared with sole crop broad bean （31.9%） or sole crop garlic （40.7%） and reduced soil residual N. Nearly 15% of 15N injected into petioles of broad bean intercropped with garlic was recovered in garlic at harvest, suggesting that N could be transferred from broad bean to strip intercropped garlic. The findings provide a basis for evaluating legumes＇ role in optimizing N fertilization when intercropped with non-legumes.展开更多
Marker-assisted selection has become an integral component of many crop breeding programs in both the private and public sectors throughout the world. Various markers, such as RFLP, RAPD, AFLP and SSR are
Under the current context of climate change, supplementary irrigation may be needed for crop production resilience. We determined the effects of supplementary irrigation on sorghum grain yield in the dry Savannah regi...Under the current context of climate change, supplementary irrigation may be needed for crop production resilience. We determined the effects of supplementary irrigation on sorghum grain yield in the dry Savannah region of Togo. A two-year trial was conducted in a controlled environment at AREJ, an agro-ecological center in Cinkassé. The plant material was sorghum variety Sorvato 28. The experimental design was a Completely Randomized Block with three replications and three treatments as follows: T0 control plot (rainfed conditions);T1 (supplementary irrigation from flowering to grain filling stage) and T2 (supplementary irrigation from planting to grain filling stage). Two irrigation techniques (furrow and Californian system) were used under each watering treatment. The results showed that irrigation technique significantly affected panicle length with no effect on 1000 grains mass. Panicle length and grain yields varied from 15.59 to 25.71 cm and 0.0 to 2.06 t∙h−1, respectively, with the highest values (25.66 cm and 2.06 t∙h−1, respectively) under the T2 treatment with the California system-based supplementary irrigation. The comparison of results obtained on treatment T0 and T2, shows that supplementary irrigation increased the yields by at least 68.62%. Supplementary irrigation during sowing and growing season (T2) improved sorghum yields in the dry savannahs of Togo, with a better performance of the California irrigation system.展开更多
Although studies argue that invasive species can cause biotic differentiation, some cases show that biological invasions actually decrease biodiversity through biotic homogenization. The concept of biotic homogenizati...Although studies argue that invasive species can cause biotic differentiation, some cases show that biological invasions actually decrease biodiversity through biotic homogenization. The concept of biotic homogenization through the invasion of a certain serious invasive plant species merit more studies. Hence, we used field surveys to quantitatively compare invasive populations of Solidago canadensis （SC） in China with the control sites （adjacent sites to SC present sites yet without the species） and SC native populations in the USA. We found that plant communities in SC invaded habitats shared similarities with those in SC native ranges. Bray-Curtis similarity clearly showed that the composition of plant communities in SC invaded habitats were similar to those in SC native ranges. Both in the native and introduced range, plant communities with SC present were characterized by SC being dominant, significantly lower species richness, or-diversity and p-diversity, as well as a decrease in the correlation coefficient between geographic distance and floristic similarities. SC favors fertile and moist loam habitat, while it dominated in various habitats in China, where more than 20 different dominants should have occurred. In conclusion, serious invasive species can quickly remodel and homogenize diverse communities by dominating them.展开更多
One of the impediments in the genetic improvement of cotton fiber is the paucity of information about genes associated with fiber development.Availability of chromosome arm substitution line CS-
The genetic base that cotton breeders commonly use to improve Upland cultivars is very narrow.The AD-genome species Gossypium barbadense,G.tomentosum,and G.mustelinum are part of
Background:The majority of attenuated total reflection Fourier transform infrared(ATR FT-IR)investigations of cotton are focused on the fiber tissue for biological mechanisms and understanding of fiber development and...Background:The majority of attenuated total reflection Fourier transform infrared(ATR FT-IR)investigations of cotton are focused on the fiber tissue for biological mechanisms and understanding of fiber development and maturity,but rarely on other cotton biomass comp on ents.This work examined in detail the ATR FT-IR spectral features of various cott on tissues/organs at reproductive and maturation stages,an a lyzed and discussed their biological implications.Results:The ATR FT-IR spectra of these tissues/organs were an a lyzed and compared with the focus on the lower wavenumber fingerprinting range.Six outstanding FT-IR bands at 1730,1620,1525,1235,1050 and 895 cm^(-1) represented the major C=O stretching,protein Amide I,Amide II,the O-H/N-H deformation,the total C-O-C stretching and the β-glycosidic linkage in celluloses,respectively,and impacted differently between these organs with the two growth stages.Furthermore,the band intensity at 1620,1525,1235,and 1050 cm^(-1) were exclusively and significantly correlated to the levels of protein(Amide I bond),protein(Amide II bond),cellulose,and hemicellulose,respectively,whereas the band at 1730 cm^(-1) was negatively correlated with ash content.Conclusions:The resulting observations indicated the capability of ATR FT-IR spectroscopy for monitoring changes,transportation,and accumulation of the major chemical components in these tissues over the cotton growth period.In other words,this spectral technology could be an effective tool for physiological,biochemical,and morphological research related to cotton biology and development.展开更多
Silencing phytochrome A1 gene (PHYA1) by RNA interference in Upland cotton (Gossypium hirsutum L. cv. Coker 312) had generated PHYA1 RNAi lines with improved fiber quality (longer, stronger and finer fiber). To reveal...Silencing phytochrome A1 gene (PHYA1) by RNA interference in Upland cotton (Gossypium hirsutum L. cv. Coker 312) had generated PHYA1 RNAi lines with improved fiber quality (longer, stronger and finer fiber). To reveal molecular mechanisms that govern fiber development with positive fiber traits, a study of global gene expression profiling of 10-DPA fibers in a PHYA1 RNAi line and its parent Coker 312 was conducted by high-throughput RNA sequencing. A comparative analysis of transcriptomes between the two lines had identified 142 genes that were differentially expressed in the 10-DPA fiber of the RNAi line. Gene Ontology analysis showed that these differentially expressed genes were mainly involved in metabolic pathways, heterocyclic/organic cyclic compound binding and multiple enzyme activities, and cell structures which were reported to play important roles in fiber development. Twenty-eight KEGG pathways were mapped for the 142 genes, and the pathways related to glycolysis/gluconeogenesis and pyruvate metabolism were the most abundant and followed by cytochrome P450-involved pathways, suggesting that fiber improvement could be through the regulation of proteins involved in cytochrome P450 pathways. Genes encoding WRKY transcription factors, sucrose synthase, xyloglucan endotransglucosylase hydrolase, udp-glucuronate: xylan alpha-glucuronosyltransferase, and genes involved in lipid metabolism and ABA/brassinosteroid signal transduction pathways were found differentially expressed in the RNAi line. These genes have direct impacts on cotton fiber quality. The results of this study elucidate molecular signatures and possible mechanisms of fiber improvement in the background of PHYA1 RNAi in cotton and should help for future fine-tuning and programming of cotton fiber development.展开更多
The number of cotton (Gossypium hirsutum L.) plants being grown per unit of land area has gained attention due to the technology fees associated with seed containing value added traits. We investigated boll retention,...The number of cotton (Gossypium hirsutum L.) plants being grown per unit of land area has gained attention due to the technology fees associated with seed containing value added traits. We investigated boll retention, yield, and yield components of cotton grown with reduced stands of 20% to 40% from the uniform planting pattern of four seeds per 30.5 cm of row. Five field experiments were conducted from 2012-2014 using eight treatments arranged in a randomized complete design with six replications. Yield and yield component data were collected. The plant one-row skip one-row treatment resulted in significant yield losses across all five experiments compared to the uniform planting pattern. Treatments with 20% stand reductions did not result in lower total yields;however, each plant in these treatments had to produce two additional bolls to maintain yield. Treatments which had at least 61 cm skips, 40% stand reduction, resulted in lower yields. Treatments had minor affects on boll weight, and lint percentage. The uniform planting pattern produced 67% of its yield from position one bolls compared to about 50% for treatments with reduced stands. Reduced stand treatments produced about 20% of their yield on monopodial branches compared to 10% for the uniform treatment. With modern precision planting equipments, opportunities exist to reduce seed rate and maintain yield;however, many production risk factors must also be considered before a reduced seeding rate is adopted.展开更多
CSB14Sh,which is isogenic for its recurrent parent TM-1 except for chromosome 14 short arm,was crossed with TM-1,and the F2 population was produced.A total of 3800 SSR primer pairs covering the whole genome were used ...CSB14Sh,which is isogenic for its recurrent parent TM-1 except for chromosome 14 short arm,was crossed with TM-1,and the F2 population was produced.A total of 3800 SSR primer pairs covering the whole genome were used to screen polymorphism among two parents,TM-1 and CSB14Sh,展开更多
Sclerotinia basal stalk rot (BSR) of sunflower (Helianthus annuus L.) is a fungal disease of the roots that causes symptoms of wilt and a basal stem lesion. Evaluating root plate growth could improve our understanding...Sclerotinia basal stalk rot (BSR) of sunflower (Helianthus annuus L.) is a fungal disease of the roots that causes symptoms of wilt and a basal stem lesion. Evaluating root plate growth could improve our understanding of BSR. Separate studies were conducted to determine the effect of sunflower growth stage or genotype on root plate diameter in North American environments. Root plate diameter of cultivated hybrids at reproductive growth stages was 3 to 4 times larger than vegetative stages. Cultivated hybrids had larger root plate diameter than interspecific lines. These results have implications for artificial inoculation methods that evaluate genotypes for BSR resistance in the field or greenhouse. Disease escapes can occur if field-grown plants are inoculated too far from the root plate and/or too early at vegetative growth stages. Side-dressing mycelium-infested cereal grain closer (i.e., 10 cm) to plants at reproductive growth stages (i.e., R1 - R4) can increase disease pressure and reduce disease escapes. These guidelines for the field can be used to validate results from artificial inoculations in the greenhouse.展开更多
Alfalfa (Medicago sativa L.) is an important forage and conservation crop in North America but occurrences of naturalized alfalfa in rangelands are rare. A naturalized population of yellow-flowered alfalfa in mixed-gr...Alfalfa (Medicago sativa L.) is an important forage and conservation crop in North America but occurrences of naturalized alfalfa in rangelands are rare. A naturalized population of yellow-flowered alfalfa in mixed-grass prairie on the Grand River National Grassland in South Dakota has potential agricultural value for the region. Despite this value, the distribution pattern of this alfalfa among and within native plant communities in the northern Great Plains is unknown. Field studies were conducted from 2003 through 2006 along topographic positions at two sites where yellow-flowered alfalfa was naturalized to evaluate the relationships of yellow-flowered alfalfa on biomass production, cover, species diversity, and alfalfa seedbank distribution characteristics. High yellow-flowered alfalfa cover (>50%) was associated with increased total biomass and occurred exclusively in swales and toeslopes that had silty loam soils. However, species diversity and non-alfalfa biomass were reduced when yellow-flowered alfalfa cover was high. Yellow-flowered alfalfa cover was lower and species richness was higher on backslopes and shoulder areas where sandy loam soils were present. A strong positive linear association existed between yellow-flowered alfalfa cover and alfalfa seedbank density (r values ranged from 0.76 to 0.82, P < 0.0001). Greater than 99% of the seeds were viable but germination rate was only 4%, indicating a high percentage of hard seed in this alfalfa population. Naturalized yellow-flowered alfalfa was a dominant component of a stable, low diversity plant community composed of mainly introduced species in rich soils of swales/toeslopes that contributed to forage production and quality in mixed-grass prairie in the northern Great Plains.展开更多
Detecting genotype-by-environment (GE) interaction effects or yield stability is one of the most important components for crop trial data analysis, especially in historical crop trial data. However, it is statisticall...Detecting genotype-by-environment (GE) interaction effects or yield stability is one of the most important components for crop trial data analysis, especially in historical crop trial data. However, it is statistically challenging to discover the GE interaction effects because many published data were just entry means under each environment rather than repeated field plot data. In this study, we propose a new methodology, which can be used to impute replicated trial data sets to reveal GE interactions from the original data. As a demonstration, we used a data set, which includes 28 potato genotypes and six environments with three replications to numerically evaluate the properties of this new imputation method. We compared the phenotypic means and predicted random effects from the imputed data with the results from the original data. The results from the imputed data were highly consistent with those from the original data set, indicating that imputed data from the method we proposed in this study can be used to reveal information including GE interaction effects harbored in the original data. Therefore, this study could pave a way to detect the GE interactions and other related information from historical crop trial reports when replications were not available.展开更多
Determining biomass production of individual alfalfa (Medicago sativa L.) plants in space planted evaluation studies is generally not feasible. Clipping plants is time consuming, expensive, and often not possible if t...Determining biomass production of individual alfalfa (Medicago sativa L.) plants in space planted evaluation studies is generally not feasible. Clipping plants is time consuming, expensive, and often not possible if the plants are subjected to grazing. A regression function (B′ = 0.72558 + 0.11638 × V′) was developed from spaced plants growing on rangeland in northwestern South Dakota near Buffalo to nondestructively estimate individual plant biomass (B) from canopy volume (V). However, external validation is necessary to effectively apply the model to other environments. In the summer of 2015, new data to validate the model were collected from spaced plants near Brookings, South Dakota. Canopy volume and clipped plant biomass were obtained from ten alfalfa populations varying in genetic background, growth habit, and growth stage. Fitted models for the model-building and validation data sets had similar estimated regression coefficients and attributes. Mean squared prediction errors (MSPR) were similar to or smaller than error mean square (MSE) of the model-building regression model, indicating reasonable predictive ability. Validation results indicated that the model reliably estimated biomass of plants in another environment. However, the technique should not be utilized where individual plants are not easily distinguished, such as alfalfa monocultures. Estimating biomass from canopy volume values that are extrapolations (>2.077 × 10<sup>6</sup> cm<sup>3</sup>) of the model-building data set is not recommended.展开更多
The genus Gossypium is a very diverse one with about 50 species.However,a very narrow germplasm base is presently being used for genetic improvement of Upland cotton.The wild
The ubiquitin-proteasome proteolysis pathway is responsible for the degradation of abnormal and short-lived proteins to regulate many important biochemical activities in eukaryotes. By employing affymetrix microarray ...The ubiquitin-proteasome proteolysis pathway is responsible for the degradation of abnormal and short-lived proteins to regulate many important biochemical activities in eukaryotes. By employing affymetrix microarray analysis, we have identified a novel ubiquitin ligase E3 gene GhRING2 that is differentially expressed between two Gossypium hirsutum lines-Texas Marker-1 (TM-1) and Chromosome Substitution Line CS-B25. The CS-B25 line has chromosome 25 from G. barbadense substituted into TM-1. The complete nucleotide sequences of GhRING2 along with its 5’-flanking region were obtained by genomic walking. GhRING2 was highly expressed in elongating fiber, and GUS expression directed by the GhRING2 promoter was found in hypocotyls and young stems of transgenic Arabidopsis plants. Using a yeast two-hybrid assay GhRING2 was found to interact with a PROTODERMAL FACTOR1 (GhPDF1) protein. GhPDF1 was expressed preferentially in immature ovules and fiber initials, and the GhPDF1 gene had been suggested to play a role in cell fate determination and fiber development. Pull down and plasmid swap assays further confirmed the interaction between GhRING2 and GhPDF1. The expression and protein interaction data indicate that GhRING2 may be involved in the turnover of GhPDF1 and participation in the transition from initiation to elongation stages during fiber development. Our data strongly suggest that the ubiquitin-proteasome pathway may regulate cotton fiber growth and development. The nucleotide sequence data of GhRING2 in this article have been submitted to the Gen Bank Nucleotide Sequence Data Bases under the accession number BankIt 1,742,008 SeqKM 108,000.展开更多
A chromosome substitution line, CS-B25, was developed by the substitution of chromosome pair 25 of Gossypium hirsutum TM-1 with the homologous pair of chromosome 25 from G. barbadense, a double haploid Pima 3-79 line....A chromosome substitution line, CS-B25, was developed by the substitution of chromosome pair 25 of Gossypium hirsutum TM-1 with the homologous pair of chromosome 25 from G. barbadense, a double haploid Pima 3-79 line. CS-B25 has improved fiber traits compared to its parent TM-1. To explore the molecule mechanisms underlying improved fiber traits, deep sequencing of total RNA was used to compare gene expression in fibers of CS-B25 and TM-1 at 10 days post anthesis (10-DPA). A total of 1872 differentially expressed genes (DEGs) were detected between the two lines, with 1175 up-regulated and 697 down-regulated in CS-B25. Gene Ontology (GO) enrichment analysis of the expression data by Generally Applicable Gene-set Enrichment (GAGE) and ReviGO indicated that the most prevalent Biological Process GO terms associated with DEGs included DNA-templated transcription, response to oxidative stress, and cellulose biosynthesis. Enriched Molecular Function GO terms included structural constituents of cytoskeleton, peroxidase activity, cellulose synthase (UDP-forming) activity, and transcription regulatory region sequence-specific DNA binding factors. GAGE was also used to find enriched KEGG pathways, and the highly represented pathways were Biosynthesis of Amino Acids, Starch and Sucrose Metabolism, Phenylpropanoid Biosynthesis, Protein Processing in Endoplasmic Reticulum, and Plant Hormone Signal Transduction. Many of the identified DEGs are involved in cytoskeleton and cell wall metabolism. The results of gene expression data have provided new insight into the molecular mechanisms of fiber development during the fiber elongation stage and would offer novel candidate genes that may be utilized in cotton fiber quality improvement.展开更多
Linear mixed model (LMM) approaches have been widely applied in many areas of research data analysis because they offer great flexibility for different data structures and linear model systems. In this study, emphasis...Linear mixed model (LMM) approaches have been widely applied in many areas of research data analysis because they offer great flexibility for different data structures and linear model systems. In this study, emphasis is placed on comparing the properties of two LMM approaches: restricted maximum likelihood (REML) and minimum norm quadratic unbiased estimation (MINQUE) with and without resampling techniques being included. Bias, testing power, Type I error, and computing time were compared between REML and MINQUE approaches with and without Jackknife technique based on 500 simulated data sets. Results showed that MINQUE and REML methods performed equally regarding bias, Type I error, and power. Jackknife-based MINQUE and REML greatly improved power compared to non-Jackknife based linear mixed model approaches. Results also showed that MINQUE is more time-saving compared to REML, especially with the use of resampling techniques and large data set analysis. Results from the actual cotton data analysis were in agreement with our simulated results. Therefore, Jackknife-based MINQUE approaches could be recommended to achieve desirable power with reduced time for a large data analysis and model simulations.展开更多
基金supported by the Special Fund for Agroscientific Research in the Public Interest,China (201003014)the National Natural Science Foundation of China (31460143)
文摘Utilization and transfer of nitrogen （N）in a strip intercropping system of garlic （Allium safivum L.） and broad bean （Vicia faba L.） have been investigated rarely. The objectives of this study were to quantify N uptake and utilization by intercropped broad bean and garlic and determine the magnitude of N transfer from broad bean to garlic. Field and pot trials were carried out in the Erhai Lake Basin in China using ^15N tracer applied to the soil or injected into broad bean plants. Strip intercropping of garlic and broad bean increased N absorption （47.2%） compared with sole crop broad bean （31.9%） or sole crop garlic （40.7%） and reduced soil residual N. Nearly 15% of 15N injected into petioles of broad bean intercropped with garlic was recovered in garlic at harvest, suggesting that N could be transferred from broad bean to strip intercropped garlic. The findings provide a basis for evaluating legumes＇ role in optimizing N fertilization when intercropped with non-legumes.
文摘Marker-assisted selection has become an integral component of many crop breeding programs in both the private and public sectors throughout the world. Various markers, such as RFLP, RAPD, AFLP and SSR are
文摘Under the current context of climate change, supplementary irrigation may be needed for crop production resilience. We determined the effects of supplementary irrigation on sorghum grain yield in the dry Savannah region of Togo. A two-year trial was conducted in a controlled environment at AREJ, an agro-ecological center in Cinkassé. The plant material was sorghum variety Sorvato 28. The experimental design was a Completely Randomized Block with three replications and three treatments as follows: T0 control plot (rainfed conditions);T1 (supplementary irrigation from flowering to grain filling stage) and T2 (supplementary irrigation from planting to grain filling stage). Two irrigation techniques (furrow and Californian system) were used under each watering treatment. The results showed that irrigation technique significantly affected panicle length with no effect on 1000 grains mass. Panicle length and grain yields varied from 15.59 to 25.71 cm and 0.0 to 2.06 t∙h−1, respectively, with the highest values (25.66 cm and 2.06 t∙h−1, respectively) under the T2 treatment with the California system-based supplementary irrigation. The comparison of results obtained on treatment T0 and T2, shows that supplementary irrigation increased the yields by at least 68.62%. Supplementary irrigation during sowing and growing season (T2) improved sorghum yields in the dry savannahs of Togo, with a better performance of the California irrigation system.
基金supported by the National Basic Research and Development Program of China (2009CB1192)the National Natural Science Foundation of China(31070482)the 111 Project from the Ministry of Education of P. R. China (B07030)
文摘Although studies argue that invasive species can cause biotic differentiation, some cases show that biological invasions actually decrease biodiversity through biotic homogenization. The concept of biotic homogenization through the invasion of a certain serious invasive plant species merit more studies. Hence, we used field surveys to quantitatively compare invasive populations of Solidago canadensis （SC） in China with the control sites （adjacent sites to SC present sites yet without the species） and SC native populations in the USA. We found that plant communities in SC invaded habitats shared similarities with those in SC native ranges. Bray-Curtis similarity clearly showed that the composition of plant communities in SC invaded habitats were similar to those in SC native ranges. Both in the native and introduced range, plant communities with SC present were characterized by SC being dominant, significantly lower species richness, or-diversity and p-diversity, as well as a decrease in the correlation coefficient between geographic distance and floristic similarities. SC favors fertile and moist loam habitat, while it dominated in various habitats in China, where more than 20 different dominants should have occurred. In conclusion, serious invasive species can quickly remodel and homogenize diverse communities by dominating them.
文摘One of the impediments in the genetic improvement of cotton fiber is the paucity of information about genes associated with fiber development.Availability of chromosome arm substitution line CS-
文摘The genetic base that cotton breeders commonly use to improve Upland cultivars is very narrow.The AD-genome species Gossypium barbadense,G.tomentosum,and G.mustelinum are part of
基金supported in part by the U.S. Department of Agriculture, Agricultural Research Service
文摘Background:The majority of attenuated total reflection Fourier transform infrared(ATR FT-IR)investigations of cotton are focused on the fiber tissue for biological mechanisms and understanding of fiber development and maturity,but rarely on other cotton biomass comp on ents.This work examined in detail the ATR FT-IR spectral features of various cott on tissues/organs at reproductive and maturation stages,an a lyzed and discussed their biological implications.Results:The ATR FT-IR spectra of these tissues/organs were an a lyzed and compared with the focus on the lower wavenumber fingerprinting range.Six outstanding FT-IR bands at 1730,1620,1525,1235,1050 and 895 cm^(-1) represented the major C=O stretching,protein Amide I,Amide II,the O-H/N-H deformation,the total C-O-C stretching and the β-glycosidic linkage in celluloses,respectively,and impacted differently between these organs with the two growth stages.Furthermore,the band intensity at 1620,1525,1235,and 1050 cm^(-1) were exclusively and significantly correlated to the levels of protein(Amide I bond),protein(Amide II bond),cellulose,and hemicellulose,respectively,whereas the band at 1730 cm^(-1) was negatively correlated with ash content.Conclusions:The resulting observations indicated the capability of ATR FT-IR spectroscopy for monitoring changes,transportation,and accumulation of the major chemical components in these tissues over the cotton growth period.In other words,this spectral technology could be an effective tool for physiological,biochemical,and morphological research related to cotton biology and development.
文摘Silencing phytochrome A1 gene (PHYA1) by RNA interference in Upland cotton (Gossypium hirsutum L. cv. Coker 312) had generated PHYA1 RNAi lines with improved fiber quality (longer, stronger and finer fiber). To reveal molecular mechanisms that govern fiber development with positive fiber traits, a study of global gene expression profiling of 10-DPA fibers in a PHYA1 RNAi line and its parent Coker 312 was conducted by high-throughput RNA sequencing. A comparative analysis of transcriptomes between the two lines had identified 142 genes that were differentially expressed in the 10-DPA fiber of the RNAi line. Gene Ontology analysis showed that these differentially expressed genes were mainly involved in metabolic pathways, heterocyclic/organic cyclic compound binding and multiple enzyme activities, and cell structures which were reported to play important roles in fiber development. Twenty-eight KEGG pathways were mapped for the 142 genes, and the pathways related to glycolysis/gluconeogenesis and pyruvate metabolism were the most abundant and followed by cytochrome P450-involved pathways, suggesting that fiber improvement could be through the regulation of proteins involved in cytochrome P450 pathways. Genes encoding WRKY transcription factors, sucrose synthase, xyloglucan endotransglucosylase hydrolase, udp-glucuronate: xylan alpha-glucuronosyltransferase, and genes involved in lipid metabolism and ABA/brassinosteroid signal transduction pathways were found differentially expressed in the RNAi line. These genes have direct impacts on cotton fiber quality. The results of this study elucidate molecular signatures and possible mechanisms of fiber improvement in the background of PHYA1 RNAi in cotton and should help for future fine-tuning and programming of cotton fiber development.
文摘The number of cotton (Gossypium hirsutum L.) plants being grown per unit of land area has gained attention due to the technology fees associated with seed containing value added traits. We investigated boll retention, yield, and yield components of cotton grown with reduced stands of 20% to 40% from the uniform planting pattern of four seeds per 30.5 cm of row. Five field experiments were conducted from 2012-2014 using eight treatments arranged in a randomized complete design with six replications. Yield and yield component data were collected. The plant one-row skip one-row treatment resulted in significant yield losses across all five experiments compared to the uniform planting pattern. Treatments with 20% stand reductions did not result in lower total yields;however, each plant in these treatments had to produce two additional bolls to maintain yield. Treatments which had at least 61 cm skips, 40% stand reduction, resulted in lower yields. Treatments had minor affects on boll weight, and lint percentage. The uniform planting pattern produced 67% of its yield from position one bolls compared to about 50% for treatments with reduced stands. Reduced stand treatments produced about 20% of their yield on monopodial branches compared to 10% for the uniform treatment. With modern precision planting equipments, opportunities exist to reduce seed rate and maintain yield;however, many production risk factors must also be considered before a reduced seeding rate is adopted.
文摘CSB14Sh,which is isogenic for its recurrent parent TM-1 except for chromosome 14 short arm,was crossed with TM-1,and the F2 population was produced.A total of 3800 SSR primer pairs covering the whole genome were used to screen polymorphism among two parents,TM-1 and CSB14Sh,
文摘Sclerotinia basal stalk rot (BSR) of sunflower (Helianthus annuus L.) is a fungal disease of the roots that causes symptoms of wilt and a basal stem lesion. Evaluating root plate growth could improve our understanding of BSR. Separate studies were conducted to determine the effect of sunflower growth stage or genotype on root plate diameter in North American environments. Root plate diameter of cultivated hybrids at reproductive growth stages was 3 to 4 times larger than vegetative stages. Cultivated hybrids had larger root plate diameter than interspecific lines. These results have implications for artificial inoculation methods that evaluate genotypes for BSR resistance in the field or greenhouse. Disease escapes can occur if field-grown plants are inoculated too far from the root plate and/or too early at vegetative growth stages. Side-dressing mycelium-infested cereal grain closer (i.e., 10 cm) to plants at reproductive growth stages (i.e., R1 - R4) can increase disease pressure and reduce disease escapes. These guidelines for the field can be used to validate results from artificial inoculations in the greenhouse.
文摘Alfalfa (Medicago sativa L.) is an important forage and conservation crop in North America but occurrences of naturalized alfalfa in rangelands are rare. A naturalized population of yellow-flowered alfalfa in mixed-grass prairie on the Grand River National Grassland in South Dakota has potential agricultural value for the region. Despite this value, the distribution pattern of this alfalfa among and within native plant communities in the northern Great Plains is unknown. Field studies were conducted from 2003 through 2006 along topographic positions at two sites where yellow-flowered alfalfa was naturalized to evaluate the relationships of yellow-flowered alfalfa on biomass production, cover, species diversity, and alfalfa seedbank distribution characteristics. High yellow-flowered alfalfa cover (>50%) was associated with increased total biomass and occurred exclusively in swales and toeslopes that had silty loam soils. However, species diversity and non-alfalfa biomass were reduced when yellow-flowered alfalfa cover was high. Yellow-flowered alfalfa cover was lower and species richness was higher on backslopes and shoulder areas where sandy loam soils were present. A strong positive linear association existed between yellow-flowered alfalfa cover and alfalfa seedbank density (r values ranged from 0.76 to 0.82, P < 0.0001). Greater than 99% of the seeds were viable but germination rate was only 4%, indicating a high percentage of hard seed in this alfalfa population. Naturalized yellow-flowered alfalfa was a dominant component of a stable, low diversity plant community composed of mainly introduced species in rich soils of swales/toeslopes that contributed to forage production and quality in mixed-grass prairie in the northern Great Plains.
文摘Detecting genotype-by-environment (GE) interaction effects or yield stability is one of the most important components for crop trial data analysis, especially in historical crop trial data. However, it is statistically challenging to discover the GE interaction effects because many published data were just entry means under each environment rather than repeated field plot data. In this study, we propose a new methodology, which can be used to impute replicated trial data sets to reveal GE interactions from the original data. As a demonstration, we used a data set, which includes 28 potato genotypes and six environments with three replications to numerically evaluate the properties of this new imputation method. We compared the phenotypic means and predicted random effects from the imputed data with the results from the original data. The results from the imputed data were highly consistent with those from the original data set, indicating that imputed data from the method we proposed in this study can be used to reveal information including GE interaction effects harbored in the original data. Therefore, this study could pave a way to detect the GE interactions and other related information from historical crop trial reports when replications were not available.
文摘Determining biomass production of individual alfalfa (Medicago sativa L.) plants in space planted evaluation studies is generally not feasible. Clipping plants is time consuming, expensive, and often not possible if the plants are subjected to grazing. A regression function (B′ = 0.72558 + 0.11638 × V′) was developed from spaced plants growing on rangeland in northwestern South Dakota near Buffalo to nondestructively estimate individual plant biomass (B) from canopy volume (V). However, external validation is necessary to effectively apply the model to other environments. In the summer of 2015, new data to validate the model were collected from spaced plants near Brookings, South Dakota. Canopy volume and clipped plant biomass were obtained from ten alfalfa populations varying in genetic background, growth habit, and growth stage. Fitted models for the model-building and validation data sets had similar estimated regression coefficients and attributes. Mean squared prediction errors (MSPR) were similar to or smaller than error mean square (MSE) of the model-building regression model, indicating reasonable predictive ability. Validation results indicated that the model reliably estimated biomass of plants in another environment. However, the technique should not be utilized where individual plants are not easily distinguished, such as alfalfa monocultures. Estimating biomass from canopy volume values that are extrapolations (>2.077 × 10<sup>6</sup> cm<sup>3</sup>) of the model-building data set is not recommended.
文摘The genus Gossypium is a very diverse one with about 50 species.However,a very narrow germplasm base is presently being used for genetic improvement of Upland cotton.The wild
文摘The ubiquitin-proteasome proteolysis pathway is responsible for the degradation of abnormal and short-lived proteins to regulate many important biochemical activities in eukaryotes. By employing affymetrix microarray analysis, we have identified a novel ubiquitin ligase E3 gene GhRING2 that is differentially expressed between two Gossypium hirsutum lines-Texas Marker-1 (TM-1) and Chromosome Substitution Line CS-B25. The CS-B25 line has chromosome 25 from G. barbadense substituted into TM-1. The complete nucleotide sequences of GhRING2 along with its 5’-flanking region were obtained by genomic walking. GhRING2 was highly expressed in elongating fiber, and GUS expression directed by the GhRING2 promoter was found in hypocotyls and young stems of transgenic Arabidopsis plants. Using a yeast two-hybrid assay GhRING2 was found to interact with a PROTODERMAL FACTOR1 (GhPDF1) protein. GhPDF1 was expressed preferentially in immature ovules and fiber initials, and the GhPDF1 gene had been suggested to play a role in cell fate determination and fiber development. Pull down and plasmid swap assays further confirmed the interaction between GhRING2 and GhPDF1. The expression and protein interaction data indicate that GhRING2 may be involved in the turnover of GhPDF1 and participation in the transition from initiation to elongation stages during fiber development. Our data strongly suggest that the ubiquitin-proteasome pathway may regulate cotton fiber growth and development. The nucleotide sequence data of GhRING2 in this article have been submitted to the Gen Bank Nucleotide Sequence Data Bases under the accession number BankIt 1,742,008 SeqKM 108,000.
文摘A chromosome substitution line, CS-B25, was developed by the substitution of chromosome pair 25 of Gossypium hirsutum TM-1 with the homologous pair of chromosome 25 from G. barbadense, a double haploid Pima 3-79 line. CS-B25 has improved fiber traits compared to its parent TM-1. To explore the molecule mechanisms underlying improved fiber traits, deep sequencing of total RNA was used to compare gene expression in fibers of CS-B25 and TM-1 at 10 days post anthesis (10-DPA). A total of 1872 differentially expressed genes (DEGs) were detected between the two lines, with 1175 up-regulated and 697 down-regulated in CS-B25. Gene Ontology (GO) enrichment analysis of the expression data by Generally Applicable Gene-set Enrichment (GAGE) and ReviGO indicated that the most prevalent Biological Process GO terms associated with DEGs included DNA-templated transcription, response to oxidative stress, and cellulose biosynthesis. Enriched Molecular Function GO terms included structural constituents of cytoskeleton, peroxidase activity, cellulose synthase (UDP-forming) activity, and transcription regulatory region sequence-specific DNA binding factors. GAGE was also used to find enriched KEGG pathways, and the highly represented pathways were Biosynthesis of Amino Acids, Starch and Sucrose Metabolism, Phenylpropanoid Biosynthesis, Protein Processing in Endoplasmic Reticulum, and Plant Hormone Signal Transduction. Many of the identified DEGs are involved in cytoskeleton and cell wall metabolism. The results of gene expression data have provided new insight into the molecular mechanisms of fiber development during the fiber elongation stage and would offer novel candidate genes that may be utilized in cotton fiber quality improvement.
文摘Linear mixed model (LMM) approaches have been widely applied in many areas of research data analysis because they offer great flexibility for different data structures and linear model systems. In this study, emphasis is placed on comparing the properties of two LMM approaches: restricted maximum likelihood (REML) and minimum norm quadratic unbiased estimation (MINQUE) with and without resampling techniques being included. Bias, testing power, Type I error, and computing time were compared between REML and MINQUE approaches with and without Jackknife technique based on 500 simulated data sets. Results showed that MINQUE and REML methods performed equally regarding bias, Type I error, and power. Jackknife-based MINQUE and REML greatly improved power compared to non-Jackknife based linear mixed model approaches. Results also showed that MINQUE is more time-saving compared to REML, especially with the use of resampling techniques and large data set analysis. Results from the actual cotton data analysis were in agreement with our simulated results. Therefore, Jackknife-based MINQUE approaches could be recommended to achieve desirable power with reduced time for a large data analysis and model simulations.
