We present a novel methodology and strategy to predict pressures and flow rates in the global cardiovascular network in different postures varying from supine to upright. A closed-loop, multiscale mathematical model o...We present a novel methodology and strategy to predict pressures and flow rates in the global cardiovascular network in different postures varying from supine to upright. A closed-loop, multiscale mathematical model of the entire cardiovascular system (CVS) is developed through an integration of one-dimensional (1D) modeling of the large systemic arteries and veins, and zero-dimensional (0D) lumped-parameter modeling of the heart, the cardiac-pulmonary circulation, the cardiac and venous valves, as well as the microcirculation. A versatile junction model is proposed and incorporated into the 1D model to cope with splitting and/or merging flows across a multibranched junction, which is validated to be capable of estimating both subcritical and supercritical flows while ensuring the mass conservation and total pressure continuity. To model gravitational effects on global hemodynamics during postural change, a robust venous valve model is further established for the 1D venous flows and distributed throughout the entire venous network with consideration of its anatomically realistic numbers and locations. The present integrated model is proven to enable reasonable prediction of pressure and flow rate waveforms associated with cardiopulmonary circulation, systemic circulation in arteries and veins, as well as microcirculation within normal physiological ranges, particularly in mean venous pressures, which well match the in vivo measurements. Applications of the cardiovascular model at different postures demonstrate that gravity exerts remarkable influence on arterial and venous pressures, venous returns and cardiac outputs whereas venous pressures below the heart level show a specific correlation between central venous and hydrostatic pressures in right atrium and veins.展开更多
A novel full Eulerian fluid-elastic membrane coupling method on the fixed Cartesian coordinate mesh is proposed within the framework of the volume-of-fluid approach.The present method is based on a full Eulerian fluid...A novel full Eulerian fluid-elastic membrane coupling method on the fixed Cartesian coordinate mesh is proposed within the framework of the volume-of-fluid approach.The present method is based on a full Eulerian fluid-(bulk)structure coupling solver(Sugiyama et al.,J.Comput.Phys.,230(2011)596–627),with the bulk structure replaced by elastic membranes.In this study,a closed membrane is considered,and it is described by a volume-of-fluid or volume-fraction information generally called VOF function.A smoothed indicator(or characteristic)function is introduced as a phase indicator which results in a smoothed VOF function.This smoothed VOF function uses a smoothed delta function,and it enables a membrane singular force to be incorporated into a mixture momentum equation.In order to deal with a membrane deformation on the Eulerian mesh,a deformation tensor is introduced and updated within a compactly supported region near the interface.Both the neo-Hookean and the Skalak models are employed in the numerical simulations.A smoothed(and less dissipative)interface capturing method is employed for the advection of the VOF function and the quantities defined on the membrane.The stability restriction due to membrane stiffness is relaxed by using a quasi-implicit approach.The present method is validated by using the spherical membrane deformation problems,and is applied to a pressure-driven flow with the biconcave membrane capsules(red blood cells).展开更多
Microscopic level interaction between fusion-peptides and lipid bilayer membranes plays a crucial role in membrane fusion,a key step of viral infection.In this paper,we use coarse-grained molecular dynamics(CGMD)simul...Microscopic level interaction between fusion-peptides and lipid bilayer membranes plays a crucial role in membrane fusion,a key step of viral infection.In this paper,we use coarse-grained molecular dynamics(CGMD)simulations to study the interaction between hemagglutinin fusion-peptides and phospholipid bilayer membranes.With CGMD,we are able to simulate the interaction of fusion peptides with a relatively large piece of membrane for a sufficiently long time period,which is necessary for a detailed understanding of the fusion process.A conformation of the peptide with a kink at the level of phosphate group is obtained,consistent with NMR and EPR studies.Our results show that the N-terminal segment of the peptide inserts more deeply into the membrane bilayer compared to the C-terminal segment,as observed in previous experiments.Our simulations also show that the presence of fusion peptides inside the membrane may cause bilayer thinning and lipid molecule disorder.Finally,our results reveal that peptides tend to aggregate,indicating cluster formation as seen in many experiments.展开更多
基金supported by a Grant-in-Aid for Scientific Research (Grant 17300141)Japan Society for the Promotion of Science and Research and Development of the Next Generation Integrated Simulation of Living Matter, JST,a part of the Development and Use of the Next Generation Supercomputer Project of the Ministry of Education, Culture, Sports, Science and Technology (MEXT), Japanthe RIKEN Junior Research Associate Program
文摘We present a novel methodology and strategy to predict pressures and flow rates in the global cardiovascular network in different postures varying from supine to upright. A closed-loop, multiscale mathematical model of the entire cardiovascular system (CVS) is developed through an integration of one-dimensional (1D) modeling of the large systemic arteries and veins, and zero-dimensional (0D) lumped-parameter modeling of the heart, the cardiac-pulmonary circulation, the cardiac and venous valves, as well as the microcirculation. A versatile junction model is proposed and incorporated into the 1D model to cope with splitting and/or merging flows across a multibranched junction, which is validated to be capable of estimating both subcritical and supercritical flows while ensuring the mass conservation and total pressure continuity. To model gravitational effects on global hemodynamics during postural change, a robust venous valve model is further established for the 1D venous flows and distributed throughout the entire venous network with consideration of its anatomically realistic numbers and locations. The present integrated model is proven to enable reasonable prediction of pressure and flow rate waveforms associated with cardiopulmonary circulation, systemic circulation in arteries and veins, as well as microcirculation within normal physiological ranges, particularly in mean venous pressures, which well match the in vivo measurements. Applications of the cardiovascular model at different postures demonstrate that gravity exerts remarkable influence on arterial and venous pressures, venous returns and cardiac outputs whereas venous pressures below the heart level show a specific correlation between central venous and hydrostatic pressures in right atrium and veins.
文摘A novel full Eulerian fluid-elastic membrane coupling method on the fixed Cartesian coordinate mesh is proposed within the framework of the volume-of-fluid approach.The present method is based on a full Eulerian fluid-(bulk)structure coupling solver(Sugiyama et al.,J.Comput.Phys.,230(2011)596–627),with the bulk structure replaced by elastic membranes.In this study,a closed membrane is considered,and it is described by a volume-of-fluid or volume-fraction information generally called VOF function.A smoothed indicator(or characteristic)function is introduced as a phase indicator which results in a smoothed VOF function.This smoothed VOF function uses a smoothed delta function,and it enables a membrane singular force to be incorporated into a mixture momentum equation.In order to deal with a membrane deformation on the Eulerian mesh,a deformation tensor is introduced and updated within a compactly supported region near the interface.Both the neo-Hookean and the Skalak models are employed in the numerical simulations.A smoothed(and less dissipative)interface capturing method is employed for the advection of the VOF function and the quantities defined on the membrane.The stability restriction due to membrane stiffness is relaxed by using a quasi-implicit approach.The present method is validated by using the spherical membrane deformation problems,and is applied to a pressure-driven flow with the biconcave membrane capsules(red blood cells).
基金supported by the Susan Mann Dissertation Scholarship Award of York UniversityNatural Science and Engineering Research Council(NSERC)of Canada+1 种基金Mathematics for Information Technology and Complex System(MITACS)of CanadaResearch and Development of the Next-Generation Integrated Simulation of Living Matter,a part of the Development and Use of the Next-Generation Supercomputer Project of the Ministry of Education,Culture,Sports,Science and Technology(MEXT),Japan.
文摘Microscopic level interaction between fusion-peptides and lipid bilayer membranes plays a crucial role in membrane fusion,a key step of viral infection.In this paper,we use coarse-grained molecular dynamics(CGMD)simulations to study the interaction between hemagglutinin fusion-peptides and phospholipid bilayer membranes.With CGMD,we are able to simulate the interaction of fusion peptides with a relatively large piece of membrane for a sufficiently long time period,which is necessary for a detailed understanding of the fusion process.A conformation of the peptide with a kink at the level of phosphate group is obtained,consistent with NMR and EPR studies.Our results show that the N-terminal segment of the peptide inserts more deeply into the membrane bilayer compared to the C-terminal segment,as observed in previous experiments.Our simulations also show that the presence of fusion peptides inside the membrane may cause bilayer thinning and lipid molecule disorder.Finally,our results reveal that peptides tend to aggregate,indicating cluster formation as seen in many experiments.
