Members of the Botryosphaeriaceae are well known fungi associated with dieback,canker and fruit rot on various hosts worldwide,including mango.The aim of this study was identify a large collection of Botryosphaeriacea...Members of the Botryosphaeriaceae are well known fungi associated with dieback,canker and fruit rot on various hosts worldwide,including mango.The aim of this study was identify a large collection of Botryosphaeriaceae species associated with dieback and stem-end rot of mango in the semi-arid region of Northeastern Brazil,and compare the species in relation to mycelial growth,pathogenicity and virulence.A total of 115 isolates were sampled and based on morphology and DNA sequence data(ITS and EF1-α)seven taxa were identified,namely,Botryosphaeria dothidea,B.mamane,Fusicoccum fabicercianum,Neofusicoccum parvum,N.brasiliense sp.nov,Neoscytalidium dimidiatum and Pseudofusicoccum stromaticum.B.dothidea and P.stromaticum were the most commonly isolated species,which represented 37%and 33%of all isolates respectively.B.mamane is reported for the first time in association with mango diseases worldwide.There were significant differences among the species obtained in this study in relation to optimum temperature for mycelial growth and mycelial growth rates.All species were pathogenic on mango fruit.There were significant differences in virulence among the species,with Ne.dimidiatum and N.parvum being the most virulent species,while P.stromaticum was the least virulent.展开更多
This study aims to identify and characterize species of Lasiodiplodia associated with stem-end rot of papaya in six different populations in the Northeast of Brazil.Fungal identifications were made using a combination...This study aims to identify and characterize species of Lasiodiplodia associated with stem-end rot of papaya in six different populations in the Northeast of Brazil.Fungal identifications were made using a combination of morphology together with a phylogenetic analysis based on partial translation elongation factor 1-αsequence(EF-1α)and internal transcribed spacers(ITS).Five species of Lasiodiplodia were identified:Lasiodiplodia brasiliense sp.nov.,L.hormozganensis,L.marypalme sp.nov.,L.pseudotheobromae and L.theobromae.Only L.theobromae had previously been reported in papaya,while all the other species are reported for the first time in association with this host in Brazil and worldwide.Lasiodiplodia theobromae was the most prevalent species.All species of Lasiodiplodia were pathogenic on papaya fruit,with L.hormozganensis being the most virulent.展开更多
Mango(Mangifera indica)is a major tropical fruit species cultivated in Brazil.The objective of this study was to identify species of Lasiodiplodia associated with dieback and stem-end rot of mango in the semi-arid reg...Mango(Mangifera indica)is a major tropical fruit species cultivated in Brazil.The objective of this study was to identify species of Lasiodiplodia associated with dieback and stem-end rot of mango in the semi-arid region of Northeastern Brazil,and compare the species in relation to mycelial growth,pathogenicity and virulence.A total of 120 isolates of Lasiodiplodia were used and identifications were made using a combination of morphology and phylogenetic analysis based on partial translation elongation factor 1-αsequence(EF1-α)and internal transcribed spacers(ITS).The following species were identified:Lasiodiplodia crassispora,L.egyptiacae,L.hormozganensis,L.iraniensis,L.pseudotheobromae,L.theobromae and Lasiodiplodia sp..Lasiodiplodia theobromae was the most frequently isolated species,which represented 41%of all the isolates.Only this species had been previously reported on mango in Brazil,while the other species represent the first report associated with mango tree diseases in this country.Lasiodiplodia crassispora is reported for the first time associated with mango diseases worldwide.There were significant differences in mycelial growth rates among the Lasiodiplodia species and also in the optimum temperature for growth.All species of Lasiodiplodia were pathogenic on mango fruit.There were significant differences in virulence among the species,wherein L.hormozganensis and Lasiodiplodia sp.were the most virulent,while the least virulent were L.iraniensis,L.pseudotheobromae,L.crassispora and L.egyptiacae.展开更多
Studies on the taxonomy and phylogeny of Diplodia have been hampered by the lack of an ex-type culture linked to the holotype of D.mutila,which is the type of the genus.In this study a large collection of Diplodia str...Studies on the taxonomy and phylogeny of Diplodia have been hampered by the lack of an ex-type culture linked to the holotype of D.mutila,which is the type of the genus.In this study a large collection of Diplodia strains,obtained from ash and other woody hosts showing V-shaped cankers and branch dieback,were identified based on morphological characters and DNA sequence data from ITS and EF1-α loci.Results of combined morphological and phylogenetic analyses showed that the Fraxinus isolates from Italy,the Netherlands,Portugal and Spain belong to three distinct species namely Diplodia fraxini,Diplodia mutila and Diplodia subglobosa sp.nov.An epitype was designated for Diplodia mutila,with associated ex-epitype cultures.The name D.fraxini is re-instated and a neotype designated.Two species,Diplodia seriata and Diplodia pseudoseriata were reported for the first time on Fraxinus spp.展开更多
The diversity of Botryosphaeriaceae species associated with“Botryosphaeria dieback”of grapevine was investigated in 18 vineyards in Sardinia,Italy.Lasiodiplodia isolates obtained from different woody hosts including...The diversity of Botryosphaeriaceae species associated with“Botryosphaeria dieback”of grapevine was investigated in 18 vineyards in Sardinia,Italy.Lasiodiplodia isolates obtained from different woody hosts including holm oak,sweet orange and broom bush in Italy,Algeria and Tunisia were also characterized.Morphological and cultural characteristics as well as ITS and EF1-αsequence data were used to identify the fungal isolates.Forty-eight botryosphaeriaceous isolates were obtained from 113 symptomatic grapevine samples,from which ten species were identified.Diplodia seriata was the dominant species(25%of isolates),followed by Neofusicoccum parvum(21.7%).Two species,Diplodia olivarum and D.africana are reported for the first time on grapevine.In addition,two new species namely Lasiodiplodia mediterranea sp.nov.from grapevine,holm oak and sweet orange and Lasiodiplodia exigua sp.nov.from broom bush are described.In artificial inoculation experiments conducted on excised green grapevine shoots and lignified canes as well as holm oak seedlings,L.mediterranea was shown to be an aggressive pathogen.展开更多
Dothideomycetes comprise a highly diverse range of fungi characterized mainly by asci with two wall layers(bitunicate asci)and often with fissitunicate dehiscence.Many species are saprobes,with many asexual states com...Dothideomycetes comprise a highly diverse range of fungi characterized mainly by asci with two wall layers(bitunicate asci)and often with fissitunicate dehiscence.Many species are saprobes,with many asexual states comprising important plant pathogens.They are also endophytes,epiphytes,fungicolous,lichenized,or lichenicolous fungi.They occur in terrestrial,freshwater and marine habitats in almost every part of the world.We accept 105 families in Dothideomycetes with the new families Anteagloniaceae,Bambusicolaceae,Biatriosporaceae,Lichenoconiaceae,Muyocopronaceae,Paranectriellaceae,Roussoellaceae,Salsugineaceae,Seynesiopeltidaceae and Thyridariaceae introduced in this paper.Each family is provided with a description and notes,including asexual and asexual states,and if more than one genus is included,the type genus is also characterized.Each family is provided with at least one figure-plate,usually illustrating the type genus,a list of accepted genera,including asexual genera,and a key to these genera.A phylogenetic tree based on four gene combined analysis add support for 64 of the families and 22 orders,including the novel orders,Dyfrolomycetales,Lichenoconiales,Lichenotheliales,Monoblastiales,Natipusillales,Phaeotrichales and Strigulales.The paper is expected to provide a working document on Dothideomycetes which can be modified as new data comes to light.It is hoped that by illustrating types we provide stimulation and interest so that more work is carried out in this remarkable group of fungi.展开更多
Bi-directional BLAST is a simple approach to detect, annotate, and analyze candidate orthologous or paralogous sequences in a single go. This procedure is usually confined to the realm of customized Perl scripts, usua...Bi-directional BLAST is a simple approach to detect, annotate, and analyze candidate orthologous or paralogous sequences in a single go. This procedure is usually confined to the realm of customized Perl scripts, usually tuned for UNIX-like environments. Porting those scripts to other operating systems involves refactoring them, and also the installation of the Perl programming environment with the required libraries. To overcome these limitations, a data pipeline was implemented in Java. This application submits two batches of sequences to local versions of the NCBI BLAST tool, manages result lists, and refines both bi-directional and simple hits. GO Slim terms are attached to hits, several statistics are derived, and molecular evolution rates are estimated through PAML. The results are written to a set of delimited text tables intended for further analysis. The provided graphic user interface allows a friendly interaction with this application, which is documented and available to download at http：//moodle.fct.unl.pt/course/view.php？id=2079 or https：//sourceforge.net/projects/bidiblast/ under the GNU GPL license.展开更多
基金financed by Conselho Nacional de Desenvolvimento Científico e Tecnológico(CNPq 141275/2009-0)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior(CAPES/BEX 0245/12-7).P.S.Câmara,Marcos A.de Morais Junior and S.J.Michereff also acknowledge the CNPq research fellowship.A.J.L.Phillips thanks Fundação para a Ciência e a Tecnologia(Portugal)for financial support through grant PEst-OE/BIA/UI0457/2011。
文摘Members of the Botryosphaeriaceae are well known fungi associated with dieback,canker and fruit rot on various hosts worldwide,including mango.The aim of this study was identify a large collection of Botryosphaeriaceae species associated with dieback and stem-end rot of mango in the semi-arid region of Northeastern Brazil,and compare the species in relation to mycelial growth,pathogenicity and virulence.A total of 115 isolates were sampled and based on morphology and DNA sequence data(ITS and EF1-α)seven taxa were identified,namely,Botryosphaeria dothidea,B.mamane,Fusicoccum fabicercianum,Neofusicoccum parvum,N.brasiliense sp.nov,Neoscytalidium dimidiatum and Pseudofusicoccum stromaticum.B.dothidea and P.stromaticum were the most commonly isolated species,which represented 37%and 33%of all isolates respectively.B.mamane is reported for the first time in association with mango diseases worldwide.There were significant differences among the species obtained in this study in relation to optimum temperature for mycelial growth and mycelial growth rates.All species were pathogenic on mango fruit.There were significant differences in virulence among the species,with Ne.dimidiatum and N.parvum being the most virulent species,while P.stromaticum was the least virulent.
基金financed by Conselho Nacional de Desenvolvimento Científico e Tecnológico(CNPq 149920/2012-1)the CNPq research fellowshipFundacao para a Ciencia e a Tecnologia(Portugal)for financial support through grant PEst-OE/BIA/UI0457/2011。
文摘This study aims to identify and characterize species of Lasiodiplodia associated with stem-end rot of papaya in six different populations in the Northeast of Brazil.Fungal identifications were made using a combination of morphology together with a phylogenetic analysis based on partial translation elongation factor 1-αsequence(EF-1α)and internal transcribed spacers(ITS).Five species of Lasiodiplodia were identified:Lasiodiplodia brasiliense sp.nov.,L.hormozganensis,L.marypalme sp.nov.,L.pseudotheobromae and L.theobromae.Only L.theobromae had previously been reported in papaya,while all the other species are reported for the first time in association with this host in Brazil and worldwide.Lasiodiplodia theobromae was the most prevalent species.All species of Lasiodiplodia were pathogenic on papaya fruit,with L.hormozganensis being the most virulent.
基金financed by Conselho Nacional de Desenvolvimento Científico e Tecnológico(CNPq 141275/2009-0)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior(CAPES/BEX 0245/12-7).M.P.S.Câmara,Marcos A.Morais Junior and S.J.Michereff also acknowledge the CNPq research fellowshipJ.L.Phillips thanks Fundação para a Ciência e a Tecnologia(Portugal)for financial support through grant PEst-OE/BIA/UI0457/2011。
文摘Mango(Mangifera indica)is a major tropical fruit species cultivated in Brazil.The objective of this study was to identify species of Lasiodiplodia associated with dieback and stem-end rot of mango in the semi-arid region of Northeastern Brazil,and compare the species in relation to mycelial growth,pathogenicity and virulence.A total of 120 isolates of Lasiodiplodia were used and identifications were made using a combination of morphology and phylogenetic analysis based on partial translation elongation factor 1-αsequence(EF1-α)and internal transcribed spacers(ITS).The following species were identified:Lasiodiplodia crassispora,L.egyptiacae,L.hormozganensis,L.iraniensis,L.pseudotheobromae,L.theobromae and Lasiodiplodia sp..Lasiodiplodia theobromae was the most frequently isolated species,which represented 41%of all the isolates.Only this species had been previously reported on mango in Brazil,while the other species represent the first report associated with mango tree diseases in this country.Lasiodiplodia crassispora is reported for the first time associated with mango diseases worldwide.There were significant differences in mycelial growth rates among the Lasiodiplodia species and also in the optimum temperature for growth.All species of Lasiodiplodia were pathogenic on mango fruit.There were significant differences in virulence among the species,wherein L.hormozganensis and Lasiodiplodia sp.were the most virulent,while the least virulent were L.iraniensis,L.pseudotheobromae,L.crassispora and L.egyptiacae.
基金supported by the programme Ciencia 2008,co-funded by the Human Potential Operational Programme(National Strategic Reference Framework 2007-2013)the European Social Fund(EU)+1 种基金financed by Fundacao para a Ciencia e a Tecnologia(Portugal)through grant PEst-OE/BIA/UI0457/2011the financial support of his PhD scholarship(P.O.R.Sardegna F.S.E.Operational Programme of the Autonomous Region of Sardinia,European Social Fund 2007-2013-Axis Ⅳ Human Resources,Objective 1.3,Line of Activity 1.3.1.)。
文摘Studies on the taxonomy and phylogeny of Diplodia have been hampered by the lack of an ex-type culture linked to the holotype of D.mutila,which is the type of the genus.In this study a large collection of Diplodia strains,obtained from ash and other woody hosts showing V-shaped cankers and branch dieback,were identified based on morphological characters and DNA sequence data from ITS and EF1-α loci.Results of combined morphological and phylogenetic analyses showed that the Fraxinus isolates from Italy,the Netherlands,Portugal and Spain belong to three distinct species namely Diplodia fraxini,Diplodia mutila and Diplodia subglobosa sp.nov.An epitype was designated for Diplodia mutila,with associated ex-epitype cultures.The name D.fraxini is re-instated and a neotype designated.Two species,Diplodia seriata and Diplodia pseudoseriata were reported for the first time on Fraxinus spp.
基金Antonio Deidda and Bruno Scanu gratefully acknowledge Sardinia Regional Government for the financial support of the PhD scholarship and research grant,respectively(P.O.R.Sardegna F.S.E.Operational Programme of the Autonomous Region of Sardinia,European Social Fund 2007–2013-Axis IV Human Resources,Objective l.3,Line of Activity l.3.1.).
文摘The diversity of Botryosphaeriaceae species associated with“Botryosphaeria dieback”of grapevine was investigated in 18 vineyards in Sardinia,Italy.Lasiodiplodia isolates obtained from different woody hosts including holm oak,sweet orange and broom bush in Italy,Algeria and Tunisia were also characterized.Morphological and cultural characteristics as well as ITS and EF1-αsequence data were used to identify the fungal isolates.Forty-eight botryosphaeriaceous isolates were obtained from 113 symptomatic grapevine samples,from which ten species were identified.Diplodia seriata was the dominant species(25%of isolates),followed by Neofusicoccum parvum(21.7%).Two species,Diplodia olivarum and D.africana are reported for the first time on grapevine.In addition,two new species namely Lasiodiplodia mediterranea sp.nov.from grapevine,holm oak and sweet orange and Lasiodiplodia exigua sp.nov.from broom bush are described.In artificial inoculation experiments conducted on excised green grapevine shoots and lignified canes as well as holm oak seedlings,L.mediterranea was shown to be an aggressive pathogen.
基金We also thank Siriporn Luesuwan for arranging the loan of specimens from various herbaria.A.Ariyawansa and J.C Kang are grateful to the International collaboration plan of Science and Technology at Guizhou Province(contract No.[2012]7006)the construction of innovation talent team of Science and Technology at Guizhou Province(contract No.[2012]4007)+19 种基金China.D.J.Bhat is thankful to MFU for a Visiting Professorship during the tenure of which this paper was finalized.D.L.Hawksworth contributed to this work while in receipt of support from the Spanish Ministerio de Ciencia e Innovación(CGL2011-25003)Haixia Wu would like to thank the Grant for Essential Scientific Research of National Non-profit Institute to funds for research(No.CAFYBB2007002)thanks Xiaoming Chen,Ying Feng and Chen Hang(The Research Institute of Resource Insects,Chinese Academy of Forestry,China)for their valuable help.Jian-Kui Liu would like to thank Manfred Binder for providing valuable suggestions and kind assistance on phylogenetic analysisWe would like to thank MFU grant No.56101020032 for funding to study taxonomy and phylogeny of selected families of DothideomycetesJiye Yan and Xinghong Li would like to thank CARS-30 for funds.K.Tanaka would like to thank the Japan Society for the Promotion of Science(JSPS,25440199)for financial supportK.L.Pang would like to thank National Science Council of Taiwan for financial support(NSC101-2621-B-019-001-MY3).L.Muggia is grateful to the Austrian Science Foundation for financial support(FWF,P24114-B16 and Herta-Firnberg Project T481-B20)M.Doilom would like to thank the Thailand Research Fund through the Royal Golden Jubilee(RGJ)Ph.D.Program grant No.Ph.D./0072/2553 in 4.S.M.F./53/A.2MP Nelsen and R Lücking are grateful to the NSF(DEB 0715660“Neotropical Epiphytic Microlichens-An Innovative Inventory of a Highly Diverse yet Little Known Group of Symbiotic Organisms”DEB 0717476“Systematics of Dothideomycetes”)MP Nelsen also acknowledges a Brown Family Fellowship through the Field Museum,a William Harper Rainey Fellowship through the University of Chicago,and support through the Committee on Evolutionary Biology at the University of Chicago.R.Phookamsak would like to thank the Royal Golden Jubilee Ph.D.Program(PHD/0090/2551)under the Thailand Research Fund for scholarship supportS.A.Alias would like to thank Program Rakan University Malaya(PRPUM)-Phylogeny,Taxonomy,Relationships and Biotechnological Potential of Sooty Moulds.S.Boonmee also thanks Amy Y.Rossman and the U.S.Department of Agriculture Agricultural Research Service,Systematic Mycology and Microbiology Lab(SMML)USA for laboratory,funding support and advice on her work.S.Boonmee and P.Chomnunti would like to thank TRF/BIOTEC program Biodiversity Research and Training Grant BRT R_251181,BRT R_253012the Mushroom Research Foundation,Chiang Rai Province for funding support.S.Wikee would like to thank the Thailand Research Fund through the Royal Golden Jubilee Ph.D.Program agreement No PhD/0198/2552S.Wikee and JK Liu would like to thank The National Research Council of Thailand(NRCT)for the award of grant No 55201020002 to study the genus Phyllosticta in ThailandS.Suetrong acknowledges the financial support by TRF/BIOTEC program Biodiversity Research and Training Grant BRT R_351004 and BRT R_325015 to study marine fungi of ThailandSuetrong also thanks Morakot Tanticharoen,Kanyawim Kirtikara and Lily Eurwilaichitr,BIOTEC,Bangkok for their continued interest and support.Supalak Yacharoen,J.Monkai and K.D.Hyde would like to thank the Thailand Research Fund(BRG5280002)for financial supportGareth Jones is supported by the Distinguished Scientist Fellowship Program(DSFP),King Saud University,Saudi Arabia.Y.Wang would like to thank The International Scientific Cooperated Project of Guizhou Province(No[2013]7004)Yongxiang Liu would like to thank the Guizhou Research Fund(QKHZYZ[2010]5031 and QNKYYZX[2012]010)for financial supportHarrie Sipman is thanked for comments on part of the manuscript.
文摘Dothideomycetes comprise a highly diverse range of fungi characterized mainly by asci with two wall layers(bitunicate asci)and often with fissitunicate dehiscence.Many species are saprobes,with many asexual states comprising important plant pathogens.They are also endophytes,epiphytes,fungicolous,lichenized,or lichenicolous fungi.They occur in terrestrial,freshwater and marine habitats in almost every part of the world.We accept 105 families in Dothideomycetes with the new families Anteagloniaceae,Bambusicolaceae,Biatriosporaceae,Lichenoconiaceae,Muyocopronaceae,Paranectriellaceae,Roussoellaceae,Salsugineaceae,Seynesiopeltidaceae and Thyridariaceae introduced in this paper.Each family is provided with a description and notes,including asexual and asexual states,and if more than one genus is included,the type genus is also characterized.Each family is provided with at least one figure-plate,usually illustrating the type genus,a list of accepted genera,including asexual genera,and a key to these genera.A phylogenetic tree based on four gene combined analysis add support for 64 of the families and 22 orders,including the novel orders,Dyfrolomycetales,Lichenoconiales,Lichenotheliales,Monoblastiales,Natipusillales,Phaeotrichales and Strigulales.The paper is expected to provide a working document on Dothideomycetes which can be modified as new data comes to light.It is hoped that by illustrating types we provide stimulation and interest so that more work is carried out in this remarkable group of fungi.
文摘Bi-directional BLAST is a simple approach to detect, annotate, and analyze candidate orthologous or paralogous sequences in a single go. This procedure is usually confined to the realm of customized Perl scripts, usually tuned for UNIX-like environments. Porting those scripts to other operating systems involves refactoring them, and also the installation of the Perl programming environment with the required libraries. To overcome these limitations, a data pipeline was implemented in Java. This application submits two batches of sequences to local versions of the NCBI BLAST tool, manages result lists, and refines both bi-directional and simple hits. GO Slim terms are attached to hits, several statistics are derived, and molecular evolution rates are estimated through PAML. The results are written to a set of delimited text tables intended for further analysis. The provided graphic user interface allows a friendly interaction with this application, which is documented and available to download at http：//moodle.fct.unl.pt/course/view.php？id=2079 or https：//sourceforge.net/projects/bidiblast/ under the GNU GPL license.
