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DPABISurf:data processing&analysis for brain imaging on surface 被引量:16
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作者 Chao-Gan Yan Xin-Di Wang Bin Lu 《Science Bulletin》 SCIE EI CSCD 2021年第24期2453-2455,共3页
Functional magnetic resonance imaging(fMRI)is a prevalent technology in brain research of cognition,emotion,development,and brain disorders.The traditional fMRI analysis is based on volume-based preprocessing pipeline... Functional magnetic resonance imaging(fMRI)is a prevalent technology in brain research of cognition,emotion,development,and brain disorders.The traditional fMRI analysis is based on volume-based preprocessing pipelines and algorithms,which means that the brain MRI data is to be registered to a 3-dimensional(3D)coordinate[1].However,the relatively low spatial resolution of fMRI may lead to partial-volume-effect(e.g.,a 3D region may contain signals from grey matter,white matter and even cerebrospinal fluid).Given the human brain function is organized in a brain surface mesh manner,therefore,a growing number of studies conducted surface-based preprocessing pipelines and algorithms.Surface-based methods reconstructed the brain grey matter into 2-dimensional cortical surface which better represent the curving structure of the brain.Surface-based method is superior to volume-based method on brain registration,signal–noise ratio and reproducibility of algorithms[2].Specifically,the traditional volume-based approach was reported with a spatial localization that is only 35%of the best surface-based method[2]. 展开更多
关键词 脑影像 COORDINATE registered
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Altered cerebral activities and functional connectivity in depression:a systematic review of fMRI studies
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作者 Xue-Ying Li Xiao Chen Chao-Gan Yan 《Quantitative Biology》 CSCD 2022年第4期366-380,共15页
Background:As one of the leading causes of global disability,major depressive disorder(MDD)places a noticeable burden on individuals and society.Despite the great expectation on finding accurate biomarkers and effecti... Background:As one of the leading causes of global disability,major depressive disorder(MDD)places a noticeable burden on individuals and society.Despite the great expectation on finding accurate biomarkers and effective treatment targets of MDD,studies in applying functional magnetic resonance imaging(fMRI)are still faced with challenges,including the representational ambiguity,small sample size,low statistical power,relatively high false positive rates,etc.Thus,reviewing studies with solid methodology may help achieve a consensus on the pathology of MDD.Methods:In this systematic review,we screened fMRI studies on MDD through strict criteria to focus on reliable studies with sufficient sample size,adequate control of head motion,and a proper multiple comparison control strategy.Results:We found consistent evidence regarding the dysfunction within and among the default mode network(DMN),the frontoparietal network(FPN),and other brain regions.However,controversy remains,probably due to the heterogeneity of participants and data processing strategies.Conclusion:Future studies are recommended to apply a comprehensive set of neuro-behavioral measurements,consider the heterogeneity of MDD patients and other potentially confounding factors,apply surface-based neuroscientific network fMRI approaches,and advance research transparency and open science by applying state-ofthe-art pipelines along with open data sharing. 展开更多
关键词 DEPRESSION resting-state fMRI task-based fMRI default mode network frontoparietal network
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DPABINet:脑网络和图论分析工具箱 被引量:2
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作者 严超赣 王鑫迪 +2 位作者 鲁彬 邓昭宇 高青林 《Science Bulletin》 SCIE EI CAS CSCD 2024年第11期1628-1631,共4页
The human brain, a marvel of intricate connections, functions as a complex network comprising structurally and functionally integrated regions. This network orchestrates a multitude of complex patterns through high-le... The human brain, a marvel of intricate connections, functions as a complex network comprising structurally and functionally integrated regions. This network orchestrates a multitude of complex patterns through high-level integration and continuous cooperation, essential for overall brain functionality [1]. 展开更多
关键词 图论分析 脑网络 工具箱
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Erratum to“The power of many brains:Catalyzing neuropsychiatric discovery through open neuroimaging data and large-scale collaboration”[Sci Bull 2024;69:1536-1555] 被引量:5
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作者 Bin Lu Xiao Chen +4 位作者 Francisco Xavier Castellanos Paul MThompson Xi-Nian Zuo Yu-Feng Zang Chao-Gan Yan 《Science Bulletin》 SCIE EI CAS CSCD 2024年第17期2793-2793,共1页
The publisher regrets to note that reference citation errors have occurred in panels b,c,e-l in Fig 2 and the sentence“However,the literature reports both decreased and increased intra-network functional connections ... The publisher regrets to note that reference citation errors have occurred in panels b,c,e-l in Fig 2 and the sentence“However,the literature reports both decreased and increased intra-network functional connections among patients with depression[115,116].”The publisher would like to apologise for any inconvenience caused.Fig.2.Principal neuroimaging findings in major depressive disorder.(a)Decreased intra-DMN FC is observed in recurrent MDD patients[35].(b)Eight-week antidepressant treatment reduce extensive large-scale functional networks[107].(c)Reduced global and local efficiency(Eglob/Eloc)are revealed in MDD patients[108].(d)Structural variations of the cortex and subcortical nuclei are found in ENIGMA-MDD studies[82].(e)Accelerated brain aging based on functional MRI is observed in MDD patients[114].(f)Accelerated brain aging based on structural MRI is observed in MDD patients[115].(g)Two subtypes of MDD can be identified through DMN FC[127].(h)A significant schizophrenia PRS by MDD interaction for rostral anterior cingulate cortex thickness is found in the UK Biobank dataset[215].(i)Stability of the four MDD subtypes based on FC[126].(j)The two subtypes of MDD exhibit distinct patterns of FC within and between SMS,DMN,and subcortical structures[130].(k)Performance of the functional connectivity-based classifiers across two multicenter datasets[135].(l)Salient brain regions that serve as important classification features for the graph convolutional network-based classifier[136].Brain-PAD:brain-predicted age difference;DAN:dorsal attention network;DMN:default mode network;FC:functional connectivity;FEDN:first-episode and drug-naïve;FPN:frontoparietal network;GCN:graph convolutional neural network;HC:healthy control;linear-SVM:linear support vector machine;MDD:major depressive disorder;mddrest:REST-meta-MDD dataset;NC:normal control;RACC:rostral anterior cingulate cortex;PRS:polygenic risk score;psymri:PsyMRI dataset;rbf-SVM:radial basis function support vector machine;SCN:subcortical network;SCZ:schizophrenia;SMN:sensorimotor network;SMS:sensory and motor systems;SubC:subcortical network;VAN:ventral attention network;VN:visual network. 展开更多
关键词 CORTEX network scale
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众脑之力:通过开放神经影像数据和大规模协作催化神经精神疾病的创新发现 被引量:1
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作者 鲁彬 陈骁 +4 位作者 Francisco Xavier Castellanos Paul M.Thompson 左西年 臧玉峰 严超赣 《Science Bulletin》 SCIE EI CAS CSCD 2024年第10期1536-1555,共20页
Recent advances in open neuroimaging data are enhancing our comprehension of neuropsychiatric disorders.By pooling images from various cohorts,statistical power has increased,enabling the detection of subtle abnormali... Recent advances in open neuroimaging data are enhancing our comprehension of neuropsychiatric disorders.By pooling images from various cohorts,statistical power has increased,enabling the detection of subtle abnormalities and robust associations,and fostering new research methods.Global collaborations in imaging have furthered our knowledge of the neurobiological foundations of brain disorders and aided in imaging-based prediction for more targeted treatment.Large-scale magnetic resonance imaging initiatives are driving innovation in analytics and supporting generalizable psychiatric studies.We also emphasize the significant role of big data in understanding neural mechanisms and in the early identification and precise treatment of neuropsychiatric disorders.However,challenges such as data harmonization across different sites,privacy protection,and effective data sharing must be addressed.With proper governance and open science practices,we conclude with a projection of how large-scale imaging resources and collaborations could revolutionize diagnosis,treatment selection,and outcome prediction,contributing to optimal brain health. 展开更多
关键词 Magnetic resonance imaging Neuropsychiatric disorders Big data Open science Artificial intelligence
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Same same but different:Neuroanatomic and connectomic profiles of early-onset schizophrenia and autism spectrum disorder 被引量:2
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作者 Bin Lu Xue Li +16 位作者 Xue-Ping Gao Jing Chen Yi Liu Jian-Ping Lu Siu-Ching Kat Zeng-Hui Ma Li-Yang Zhao Ting-Ni Yin Xing Su Fan-Chao Meng Ya-Ru Zhang Shu-Xian Wu Wen-Jie Yan Ya-Song Du Xue-Rong Luo Jing Liu Chao-Gan Yan 《Medicine Plus》 2024年第1期13-25,共13页
Background:Early-onset schizophrenia(EOS)and autism spectrum disorder(ASD)are two mental disorders with abnormal neurodevelopment and overlapping clinical symptoms.However,few prospective multi-center imaging studies ... Background:Early-onset schizophrenia(EOS)and autism spectrum disorder(ASD)are two mental disorders with abnormal neurodevelopment and overlapping clinical symptoms.However,few prospective multi-center imaging studies explored their pathophysiological differences and similarities comprehensively.Methods:We utilized a large cohort of functional magnetic resonance imaging data with standardized scanning protocols from 594 participants(276 participants with high-functioning ASD,187 participants with EOS,and 131 normal controls(NCs))recruited at five centers.A comprehensive evaluation of anatomical and connectomic features,in-cluding cortical thickness,subcortical nuclei volume,functional connectivity,functional gradients,and network efficiency,was conducted,culminating in the construction of imaging-based neuro-profiles for individuals with EOS and ASD.Results:The derived neuro-profiles revealed that EOS is characterized by more pro-nounced reductions in cortical thickness and subcortical nuclei volumes.In contrast,ASD exhibited more pronounced abnormalities in connectomic attributes.The de-creased network functional connectivity and compressed functional gradients in ASD are likely to contribute to reduced network efficiency.Classifiers based on imaging profiles successfully distinguished individuals with EOS,ASD,and NCs with com-mendable performance in leave-site-out cross-validation(area under the operating characteristic curve(AUC)for ASD vs.NC:0.769,AUC for ASD vs.EOS:0.792,AUC for EOS vs.NC:0.854).Conclusion:The neuro-profiles revealed that EOS and ASD exhibit overlapping as well as unique imaging characteristics;however,EOS exhibits greater structural variation,while ASD presents with more subtle connectomic abnormalities.These findings offer valuable insights into the distinct neurobiological mechanisms of EOS and ASD and enhance the prospect of early diagnosis through objective imaging-based biomarkers. 展开更多
关键词 Early onset schizophrenia Autism spectrum disorder NEUROANATOMY CONNECTOME Functional gradient Functional magnetic resonance imaging
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The DIRECT consortium and the REST-meta-MDD project:towards neuroimaging biomarkers of major depressive disorder 被引量:5
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作者 Xiao Chen Bin Lu +55 位作者 Hui-Xian Li Xue-Ying Li Yu-Wei Wang Francisco Xavier Castellanos Li-Ping Cao Ning-Xuan Chen Wei Chen Yu-Qi Cheng Shi-Xian Cui Zhao-Yu Deng Yi-Ru Fang Qi-Yong Gong Wen-Bin Guo Zheng-Jia-Yi Hu Li Kuang Bao-Juan Li Le Li Tao Li Tao Lian Yi-Fan Liao Yan-Song Liu Zhe-Ning Liu Jian-Ping Lu Qing-Hua Luo Hua-Qing Meng Dai-Hui Peng Jiang Qiu Yue-Di Shen Tian-Mei Si Yan-Qing Tang Chuan-Yue Wang Fei Wang Hua-Ning Wang Kai Wang Xiang Wang Ying Wang Zi-Han Wang Xiao-Ping Wu Chun-Ming Xie Guang-Rong Xie Peng Xie Xiu-Feng Xu Hong Yang Jian Yang Shu-Qiao Yao Yong-Qiang Yu Yong-Gui Yuan Ke-Rang Zhang Wei Zhang Zhi-Jun Zhang Jun-Juan Zhu Xi-Nian Zuo Jing-Ping Zhao Yu-Feng Zang the DIRECT consortium Chao-Gan Yan 《Psychoradiology》 2022年第1期32-42,共11页
Despite a growing neuroimaging literature on the pathophysiology of major depressive disorder(MDD),repro-ducible findings are lacking,probably reflecting mostly small sample sizes and heterogeneity in analytic approac... Despite a growing neuroimaging literature on the pathophysiology of major depressive disorder(MDD),repro-ducible findings are lacking,probably reflecting mostly small sample sizes and heterogeneity in analytic approaches.To address these issues,the Depression Imaging REsearch ConsorTium(DIRECT)was launched.The REST-meta-MDD project,pooling 2428 functional brain images processed with a standardized pipeline across all participating sites,has been the first effort from DIRECT.In this review,we present an overview of the moti-vations,rationale,and principal findings of the studies so far from the REST-meta-MDD project.Findings from the first round of analyses of the pooled repository have included alterations in functional connectivity within the default mode network,in whole-brain topological properties,in dynamic features,and in functional lat-eralization.These well-powered exploratory observations have also provided the basis for future longitudinal hypothesis-driven research.Following these fruitful explorations,DIRECT has proceeded to its second stage of data sharing that seeks to examine ethnicity in brain alterations in MDD by extending the exclusive Chinese original sample to other ethnic groups through international collaborations.A state-of-the-art,surface-based preprocessing pipeline has also been introduced to improve sensitivity.Functional images from patients with bipolar disorder and schizophrenia will be included to identify shared and unique abnormalities across diag-nosis boundaries.In addition,large-scale longitudinal studies targeting brain network alterations following antidepressant treatment,aggregation of diffusion tensor images,and the development of functional magnetic resonance imaging-guided neuromodulation approaches are underway.Through these endeavours,we hope to accelerate the translation of functional neuroimaging findings to clinical use,such as evaluating longitudinal effects of antidepressant medications and developing individualized neuromodulation targets,while building an open repository for the scientific community. 展开更多
关键词 major depressive disorder DIRECT R-fMRI database NEUROIMAGING
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Cortical thickness abnormalities in patients with first episode psychosis:a meta-analysis of psychoradiologic studies and replication in an independent sample
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作者 Keren Wen Youjin Zhao +9 位作者 Qiyong Gong Ziyu Zhu Qian Li Nanfang Pan Shiqin Fu Joaquim Radua Eduard Vieta Poornima Kumar Graham J.Kemp Bharat B.Biswal 《Psychoradiology》 2021年第4期185-198,共14页
Background:Abnormalities of cortical thickness(CTh)in patients with their first episode psychosis(FEP)have been frequently reported,but findings are inconsistent.Objective:To define the most consistent CTh changes in ... Background:Abnormalities of cortical thickness(CTh)in patients with their first episode psychosis(FEP)have been frequently reported,but findings are inconsistent.Objective:To define the most consistent CTh changes in patients with FEP by meta-analysis of publishedwholebrain studies.Methods:The meta-analysis used seed-based dmapping(SDM)software to obtain the most prominent regional CTh changes in FEP,and meta-regression analyses to explore the effects of demographics and clinical characteristics.The meta-analysis results were verified in an independent sample of 142 FEP patients and 142 age-and sex-matched healthy controls(HCs),using both a vertex-wise and a region of interest analysis,with multiple comparisons correction.Results:The meta-analysis identified lower CTh in the rightmiddle temporal cortex(MTC)extending to superior temporal cortex(STC),insula,and anterior cingulate cortex(ACC)in FEP compared with HCs.No significant correlations were identified between CTh alterations and demographic or clinical variables.These results were replicated in the independent dataset analysis.Conclusion:This study identifies a robust pattern of cortical abnormalities in FEP and extends understanding of gray matter abnormalities and pathological mechanisms in FEP. 展开更多
关键词 psychoradiology first episode psychosis early psychosis cortical thickness META-ANALYSIS seed-based d mapping
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Intracranial neurophysiological correlates of rumination:A cross-sectional observational study
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作者 Xiao Chen Zhen Fan +3 位作者 Dong Chen Liang Wang Liang Chen Chao-Gan Yan 《Medicine Plus》 2024年第3期40-54,共15页
Background:Rumination is a transdiagnostic psychological process that plays a prominent role in many common psychiatric disorders,albeit its neurophysiological basis remains elusive.Existing neuroimaging studies have ... Background:Rumination is a transdiagnostic psychological process that plays a prominent role in many common psychiatric disorders,albeit its neurophysiological basis remains elusive.Existing neuroimaging studies have highlighted the precuneus and hippocampus as two pivotal brain regions in rumination’s neural underpinnings.Methods:Here,we examined the intracranial electroencephalogram(iEEG)recordings from 21 patients with epilepsy during a naturalistic,continuous,active rumination state and measured the low frequency(1-8 Hz)and high gamma(70-150 Hz)band oscillation powers.Results:We observed enhanced low-frequency power in the precuneus and reduced high gamma power in the hippocampus during the rumination condition compared to the control condition.The hippocampal high gamma power reduction was associated with the self-reported reflection tendency.Conclusions:Our findings provided empirical evidence of the neurophysiological underpinnings of rumination and implicated a precuneus-hippocampus coupling across neural oscillation bands during an active rumination state. 展开更多
关键词 RUMINATION Intracranial EEG PRECUNEUS HIPPOCAMPUS Oscillation power
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