Recent advances have positioned artificial intelligence(AI)as a transformative force to accelerate experiments and enhance decision-making in biological research.Yet scientific progress relies on exploring uncharted i...Recent advances have positioned artificial intelligence(AI)as a transformative force to accelerate experiments and enhance decision-making in biological research.Yet scientific progress relies on exploring uncharted intellectual territories,while AI was trained by history.This inherent limitation underscores its role as a collaborator rather than a successor to humanity.展开更多
Although the principles of synthetic biology were initially established in model bacteria,microbial producers,extremophiles and gut microbes have now emerged as valuable prokaryotic chassis for biological engineering....Although the principles of synthetic biology were initially established in model bacteria,microbial producers,extremophiles and gut microbes have now emerged as valuable prokaryotic chassis for biological engineering.Extending the host range in which designed circuits can function reliably and predictably presents a major challenge for the concept of synthetic biology to materialize.In this work,we systematically characterized the cross-species universality of two transcriptional regulatory modules—the T7 RNA polymerase activator module and the repressors module—in three non-model microbes.We found striking linear relationships in circuit activities among different organisms for both modules.Parametrized model fitting revealed host non-specific parameters defining the universality of both modules.Lastly,a genetic NOT gate and a band-pass filter circuit were constructed from these modules and tested in non-model organisms.Combined models employing host non-specific parameters were successful in quantitatively predicting circuit behaviors,underscoring the potential of universal biological parts and predictive modeling in synthetic bioengineering.展开更多
文摘Recent advances have positioned artificial intelligence(AI)as a transformative force to accelerate experiments and enhance decision-making in biological research.Yet scientific progress relies on exploring uncharted intellectual territories,while AI was trained by history.This inherent limitation underscores its role as a collaborator rather than a successor to humanity.
基金National Natural Science Foundation of China,Grant/Award Number:12090054National Key Research and Development Programof China,Grant/Award Numbers:2020YFA0906900,2021YFF1200500。
文摘Although the principles of synthetic biology were initially established in model bacteria,microbial producers,extremophiles and gut microbes have now emerged as valuable prokaryotic chassis for biological engineering.Extending the host range in which designed circuits can function reliably and predictably presents a major challenge for the concept of synthetic biology to materialize.In this work,we systematically characterized the cross-species universality of two transcriptional regulatory modules—the T7 RNA polymerase activator module and the repressors module—in three non-model microbes.We found striking linear relationships in circuit activities among different organisms for both modules.Parametrized model fitting revealed host non-specific parameters defining the universality of both modules.Lastly,a genetic NOT gate and a band-pass filter circuit were constructed from these modules and tested in non-model organisms.Combined models employing host non-specific parameters were successful in quantitatively predicting circuit behaviors,underscoring the potential of universal biological parts and predictive modeling in synthetic bioengineering.
