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A portable and versatile fluorescent platform for high-throughput screening of toxic phosgene,diethyl chlorophosphate and volatile acyl chlorides
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作者 Beitong Zhu Xiaorui Yang +3 位作者 Lirong Jiang Tianhong Chen Shuangfei Wang Lintao Zeng 《Chinese Chemical Letters》 2025年第1期453-458,共6页
Highly toxic phosgene,diethyl chlorophosphate(DCP)and volatile acyl chlorides endanger our life and public security.To achieve facile sensing and discrimination of multiple target analytes,herein,we presented a single... Highly toxic phosgene,diethyl chlorophosphate(DCP)and volatile acyl chlorides endanger our life and public security.To achieve facile sensing and discrimination of multiple target analytes,herein,we presented a single fluorescent probe(BDP-CHD)for high-throughput screening of phosgene,DCP and volatile acyl chlorides.The probe underwent a covalent cascade reaction with phosgene to form boron dipyrromethene(BODIPY)with bright green fluorescence.By contrast,DCP,diphosgene and acyl chlorides can covalently assembled with the probe,giving rise to strong blue fluorescence.The probe has demonstrated high-throughput detection capability,high sensitivity,fast response(within 3 s)and parts per trillion(ppt)level detection limit.Furthermore,a portable platform based on BDP-CHD was constructed,which has achieved high-throughput discrimination of 16 analytes through linear discriminant analysis(LDA).Moreover,a smartphone adaptable RGB recognition pattern was established for the quantitative detection of multi-analytes.Therefore,this portable fluorescence sensing platform can serve as a versatile tool for rapid and high-throughput detection of toxic phosgene,DCP and volatile acyl chlorides.The proposed“one for more”strategy simplifies multi-target discrimination procedures and holds great promise for various sensing applications. 展开更多
关键词 Fluorescent platform High throughput BODIPY Linear discriminant analysis PHOSGENE Acyl chloride Diethyl chlorophosphate
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Optimal amino acid system for early embryo development in sows based on response surface methodology and high-throughput screening cell models
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作者 Xinyu Wang Jun Huang +12 位作者 Yanlong Li Zhekun Zhu Bangxin Xue Yueyang Meng Jiale Bao Ran Ning Siyu Li Fang Chen Shihai Zhang Xiangzhou Zeng Shuang Cai Chuanjiang Cai Xiangfang Zeng 《Journal of Animal Science and Biotechnology》 2025年第3期1324-1340,共17页
Background Early embryo development plays a pivotal role in determining pregnancy outcomes,postnatal development,and lifelong health.Therefore,the strategic selection of functional nutrients to enhance embryo developm... Background Early embryo development plays a pivotal role in determining pregnancy outcomes,postnatal development,and lifelong health.Therefore,the strategic selection of functional nutrients to enhance embryo development is of paramount importance.In this study,we established a stable porcine trophectoderm cell line expressing dual fluorescent reporter genes driven by the CDX2 and TEAD4 gene promoter segments using lentiviral transfection.Results Three amino acid metabolites—kynurenic acid,taurine,and tryptamine—met the minimum z-score criteria of 2.0 for both luciferase and Renilla luciferase activities and were initially identified as potential metabolites for embryo development,with their beneficial effects validated by qPCR.Given that the identified metabolites are closely related to methionine,arginine,and tryptophan,we selected these three amino acids,using lysine as a standard,and employed response surface methodology combined with our high-throughput screening cell model to efficiently screen and optimize amino acid combination conducive to early embryo development.The optimized candidate amino acid system included lysine(1.87 mmol/L),methionine(0.82 mmol/L),tryptophan(0.23 mmol/L),and arginine(3 mmol/L),with the ratio of 1:0.43:0.12:1.60.In vitro experiments confirmed that this amino acid system enhances the expression of key genes involved in early embryonic development and improves in vitro embryo adhesion.Transcriptomic analysis of blastocysts suggested that candidate amino acid system enhances early embryo development by regulating early embryonic cell cycle and differentiation,as well as improving nutrient absorption.Furthermore,based on response surface methodology,400 sows were used to verify this amino acid system,substituting arginine with the more cost-effective N-carbamoyl glutamate(NCG),a precursor of arginine.The optimal dietary amino acid requirement was predicted to be 0.71%lysine,0.32%methionine,0.22%tryptophan,and 0.10%NCG for sows during early gestation.The optimized amino acid system ratio of the feed,derived from the peripheral release of essential amino acids,was found to be 1:0.45:0.13,which is largely consistent with the results obtained from the cell model optimization.Subsequently,we furtherly verified that this optimal dietary amino acid system significantly increased total litter size,live litter size and litter weight in sows.Conclusions In summary,we successfully established a dual-fluorescent high-throughput screening cell model for the efficient identification of potential nutrients that would promote embryo development and implantation.This innovative approach overcomes the limitations of traditional amino acid nutrition studies in sows,providing a more effective model for enhancing reproductive outcomes. 展开更多
关键词 Amino acid Embryonic development High throughput screening NUTRIENT Response Surface Methodology
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High-throughput miniaturized purge-and-trap device integrating semiconductor refrigeration storage for on-site extraction and long-term preservation of VOCs in water
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作者 Yuan Yang Yue Wang +4 位作者 Xi Wang Hanshuang Li Xiaoli Wu Yurong Deng Chengbin Zheng 《Chinese Chemical Letters》 2025年第10期558-562,共5页
To accomplish on-site separation, preconcentration and cold storage of highly volatile organic compounds(VOCs) from water samples as well as their rapid transportation to laboratory, a high-throughput miniaturized pur... To accomplish on-site separation, preconcentration and cold storage of highly volatile organic compounds(VOCs) from water samples as well as their rapid transportation to laboratory, a high-throughput miniaturized purge-and-trap(μP&T) device integrating semiconductor refrigeration storage was developed in this work. Water samples were poured into the purge vessels and purged with purified air generated by an air pump. The VOCs in water samples were then separated and preconcentrated with sorbent tubes. After their complete separation and preconcentration, the tubes were subsequently preserved in the semiconductor refrigeration unit of the μP&T device. Notably, the high integration, small size, light weight, and low power consumption of the device makes it easy to be hand-carried to the field and transport by drone from remote locations, significantly enhancing the flexibility of field sampling. The performances of the device were evaluated by comparing analytical figures of merit for the detection of four cyclic volatile methylsiloxanes(cVMSs) in water. Compared to conventional collection and preservation methods, our proposed device preserved the VOCs more consistently in the sorbent tubes, with less than 5% loss of all analytes, and maintained stability for at least 20 days at 4℃. As a proof-of-concept,10 municipal wastewater samples were pretreated using this device with recoveries ranging from 82.5% to 99.9% for the target VOCs. 展开更多
关键词 PURGE-AND-TRAP High throughput Semiconductor refrigeration storage On-site extraction Volatile organic compounds Water analysis
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Machine learning enhanced metal 3D printing:high throughput optimization and material transfer extensibility
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作者 Yuanjie Zhang Cheng Lin +10 位作者 Yuan Tian Jianbao Gao Bo Song Hao Zhang Min Wang Kechen Song Binghui Deng Dezhen Xue Yonggang Yao Yusheng Shi Kun Kelvin Fu 《International Journal of Extreme Manufacturing》 2025年第4期297-310,共14页
Metal 3D printing holds great promise for future digitalized manufacturing.However,the intricate interplay between laser and metal powders poses a significant challenge for conventional trial-and-error optimization.Me... Metal 3D printing holds great promise for future digitalized manufacturing.However,the intricate interplay between laser and metal powders poses a significant challenge for conventional trial-and-error optimization.Meanwhile,the“optimized”yet fixed parameters largely limit possible extensions to new designs and materials.Herein,we report a high throughput design coupled with machine learning(ML)guidance to eliminate the notorious cracks and porosities in metal 3D printing for improved corrosion resistance and overall performance.The high throughput methodologies are mostly on obtaining the printed samples and their structural and physical properties,while ML is used for data analysis by model building for prediction(optimization),and understanding.For 316L stainless steel,we concurrently printed 54 samples with different parameters and subjected them to parallel tests to generate an extensive dataset for ML analysis.An ensemble learning model outperformed the other five single learners while Bayesian active learning recommended optimal parameters that could reduce porosity from 0.57%to below 0.1%.Accordingly,the ML-recommended samples showed higher tensile strength(609.28 MPa)and elongation(50.67%),superior anti-corrosion(I_(corr)=4.17×10^(-8) A·cm^(-2)),and stable alkaline oxygen evolution for>100 hours(at 500 mA·cm^(-2)).Remarkably,through the correlation analysis of printing parameters and targeted properties,we find that the influence of hardness on corrosion resistance is second only to porosity.We then expedited optimization in AlSi7Mg using the learned knowledge and feed hardness and relative density,thus demonstrating the method’s general extensibility and efficiency.Our strategy can significantly accelerate the optimization of metal 3D printing and facilitate adaptable design to accommodate diverse materials and requirements. 展开更多
关键词 high throughput 3D printing machine learning 316L stainless steel rapid optimization corrosion resistance
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A high-throughput measurement of critical micelle concentrations based on absolute aggregation-caused quenching probes
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作者 Xin Ji Aun Raza +3 位作者 Jianping Qi Yi Lu Haisheng He Wei Wu 《Journal of Pharmaceutical Analysis》 2025年第3期651-653,共3页
Amphiphiles,including surfactants,have emerged as indispensable elements in materials science and pharmaceutical science,and their functions are highly relying on the critical micelle concentration(CMC)[1,2].Numerous ... Amphiphiles,including surfactants,have emerged as indispensable elements in materials science and pharmaceutical science,and their functions are highly relying on the critical micelle concentration(CMC)[1,2].Numerous fluorimetry-based probes have been developed to measure CMCs[3](Fig.S1).However,CMC measurements using these probes suffer from a time-consuming and laborious procedure and large uncertainties,primarily due to their poor photo-stabilities and highly fluctuating fluorescence backgrounds. 展开更多
关键词 high throughput measurement photo stabilities fluorescence backgrounds critical micelle concentration cmc numerous materials science critical micelle concentration fluorimetry based probes absolute aggregation caused quenching
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Throughput Optimization for Multi-UA V-Assisted Offshore Internet of Things:A Hypergraph Approach
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作者 Shuang Qi Bin Lin +4 位作者 Xu Hu Chaoyue Zhang Luyao Zheng Liping Qian Yuan Wu 《Tsinghua Science and Technology》 2025年第6期2452-2466,共15页
The rapid growth of marine applications leads to a significant increase in Maritime Devices(MDs).Traditional shore-based maritime communication networks face limitations,such as overloaded and transmission distance to... The rapid growth of marine applications leads to a significant increase in Maritime Devices(MDs).Traditional shore-based maritime communication networks face limitations,such as overloaded and transmission distance to provide network services for MDs.Unmanned Aerial Vehicles(UAVs)act as relays that can expand coverage and enhance the quality of service for offshore communication networks.We consider a multi-UAV-assisted Offshore Internet of Things(mUAV-OloT),and formulate a throughput maximization problem by jointly optimizing channel allocation,Leader MD(LMD)selection,UAV-LMD association,and LMD-MD association.Firstly,we propose the Hypergraph-based Two-Stage Matching(HTSM)algorithm where a Hypergraph-based LMD Selection(HLMDS)strategy is employed to identify the set of LMDs.Secondly,the Kuhn-Munkres algorithm is used to optimize the UAV-LMD association and a Weighted Threedimensional Hypergraph Matching(WTHM)algorithm is designed to solve the LMD-MD association and channel allocation.Numerical results show that the HTSM algorithm outperforms benchmark algorithms regarding throughput. 展开更多
关键词 multi-UAV-assisted Offshore Internet of Things(mUAV-OloT) HYPERGRAPH throughput maximization Hypergraph-based LMD Selection(HLMDS)strategy Weighted Three-dimensional Hypergraph Matching(WTHM)algorithm
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离散非线性系统Worst-Case辨识——小波逼近法
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作者 黄勇 王书宁 戴建设 《信息与控制》 CSCD 北大核心 1998年第6期457-463,468,共8页
利用小波逼近的软阈(Soft-Thresholding)方法,研究了离散非线性系统的Worst-Case辨识问题.证明了该算法在Worst-Case误差下的拟最优性和光滑性;估计了该算法的Worst-Case误差:给... 利用小波逼近的软阈(Soft-Thresholding)方法,研究了离散非线性系统的Worst-Case辨识问题.证明了该算法在Worst-Case误差下的拟最优性和光滑性;估计了该算法的Worst-Case误差:给出了存在鲁棒收敛的辨识算法的充要条件;最后,证明了小波网逼近算法是鲁棒收敛的. 展开更多
关键词 非线性系统 worst-case辨识 小波逼近 系统辨识
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A Genetic Approach to Analyze Algorithm Performance Based on the Worst-Case Instances 被引量:3
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作者 So-Yeong Jeon Yong-Hyuk Kim 《Journal of Software Engineering and Applications》 2010年第8期767-775,共9页
Search-based software engineering has mainly dealt with automated test data generation by metaheuristic search techniques. Similarly, we try to generate the test data (i.e., problem instances) which show the worst cas... Search-based software engineering has mainly dealt with automated test data generation by metaheuristic search techniques. Similarly, we try to generate the test data (i.e., problem instances) which show the worst case of algorithms by such a technique. In this paper, in terms of non-functional testing, we re-define the worst case of some algorithms, respectively. By using genetic algorithms (GAs), we illustrate the strategies corresponding to each type of instances. We here adopt three problems for examples;the sorting problem, the 0/1 knapsack problem (0/1KP), and the travelling salesperson problem (TSP). In some algorithms solving these problems, we could find the worst-case instances successfully;the successfulness of the result is based on a statistical approach and comparison to the results by using the random testing. Our tried examples introduce informative guidelines to the use of genetic algorithms in generating the worst-case instance, which is defined in the aspect of algorithm performance. 展开更多
关键词 Search-Based Software Engineering AUTOMATED Test Data Generation worst-case Instance Algorithm
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A Worst-Case Execution Time Analysis Approach Based on Independent Paths for ARM Programs
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作者 KONG Liangliang JIANG Jianhui 《Wuhan University Journal of Natural Sciences》 CAS 2012年第5期391-399,共9页
To overcome disadvantages of traditional worst-case execution time (WCET) analysis approaches, we propose a new WCET analysis approach based on independent paths for ARM programs. Based on the results of program flo... To overcome disadvantages of traditional worst-case execution time (WCET) analysis approaches, we propose a new WCET analysis approach based on independent paths for ARM programs. Based on the results of program flow analysis, it reduces and partitions the control flow graph of the program and obtains a directed graph. Using linear combinations of independent paths of the directed graph, a set of feasible paths can be generated that gives complete coverage in terms of the program paths considered. Their timing measurements and execution counts of program segments are derived from a limited number of measurements of an instrumented version of the program. After the timing measurement of the feasible paths are linearly expressed by the execution times of program seg-ments, a system of equations is derived as a constraint problem, from which we can obtain the execution times of program segments. By assigning the execution times of program segments to weights of edges in the directed graph, the WCET estimate can be calculated on the basis of graph-theoretical techniques. Comparing our WCET estimate with the WCET measurement obtained by the exhaustive measurement, the maximum error ratio is only 8.259 3 %. It is shown that the proposed approach is an effective way to obtain the safe and tight WCET estimate for ARM programs. 展开更多
关键词 worst-case execution time independent path realtime system least squares ARM microprocessor
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Channel assignment and power allocation for throughput improvement with PPO in B5G heterogeneous edge networks
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作者 Xiaoming He Yingchi Mao +3 位作者 Yinqiu Liu Ping Ping Yan Hong Han Hu 《Digital Communications and Networks》 SCIE CSCD 2024年第1期109-116,共8页
In Beyond the Fifth Generation(B5G)heterogeneous edge networks,numerous users are multiplexed on a channel or served on the same frequency resource block,in which case the transmitter applies coding and the receiver u... In Beyond the Fifth Generation(B5G)heterogeneous edge networks,numerous users are multiplexed on a channel or served on the same frequency resource block,in which case the transmitter applies coding and the receiver uses interference cancellation.Unfortunately,uncoordinated radio resource allocation can reduce system throughput and lead to user inequity,for this reason,in this paper,channel allocation and power allocation problems are formulated to maximize the system sum rate and minimum user achievable rate.Since the construction model is non-convex and the response variables are high-dimensional,a distributed Deep Reinforcement Learning(DRL)framework called distributed Proximal Policy Optimization(PPO)is proposed to allocate or assign resources.Specifically,several simulated agents are trained in a heterogeneous environment to find robust behaviors that perform well in channel assignment and power allocation.Moreover,agents in the collection stage slow down,which hinders the learning of other agents.Therefore,a preemption strategy is further proposed in this paper to optimize the distributed PPO,form DP-PPO and successfully mitigate the straggler problem.The experimental results show that our mechanism named DP-PPO improves the performance over other DRL methods. 展开更多
关键词 B5G Heterogeneous edge networks PPO Channel assignment Power allocation throughput
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Improving throughput in SWIPT-based wireless multirelay networks with relay selection and rateless codes
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作者 Gaofei Huang Qihong Zhong +2 位作者 Hui Zheng Sai Zhao Dong Tang 《Digital Communications and Networks》 SCIE CSCD 2024年第4期1131-1144,共14页
This paper studies a dual-hop Simultaneous Wireless Information and Power Transfer(SWIPT)-based multi-relay network with a direct link.To achieve high throughput in the network,a novel protocol is first developed,in w... This paper studies a dual-hop Simultaneous Wireless Information and Power Transfer(SWIPT)-based multi-relay network with a direct link.To achieve high throughput in the network,a novel protocol is first developed,in which the network can switch between a direct transmission mode and a Single-Relay-Selection-based Cooperative Transmission(SRS-CT)mode that employs dynamic decode-and-forward relaying accomplished with Rateless Codes(RCs).Then,under this protocol,an optimization problem is formulated to jointly optimize the network operation mode and the resource allocation in the SRS-CT mode.The formulated problem is difficult to solve because not only does the noncausal Channel State Information(CSI)cause the problem to be stochastic,but also the energy state evolution at each relay is complicated by network operation mode decision and resource allocation.Assuming that noncausal CSI is available,the stochastic optimization issue is first to be addressed by solving an involved deterministic optimization problem via dynamic programming,where the complicated energy state evolution issue is addressed by a layered optimization method.Then,based on a finite-state Markov channel model and assuming that CSI statistical properties are known,the stochastic optimization problem is solved by extending the result derived for the noncausal CSI case to the causal CSI case.Finally,a myopic strategy is proposed to achieve a tradeoff between complexity and performance without the knowledge of CSI statistical properties.The simulation results verify that our proposed SRS-and-RC-based design can achieve a maximum of approximately 40%throughput gain over a simple SRS-and-RC-based baseline scheme in SWIPT-based multi-relay networks. 展开更多
关键词 Simultaneous wireless information and power TRANSFER Energy harvesting Relay networks throughput maximization
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Feeding Ecology of Lagocephalus spadiceus in the Beibu Gulf by High-Throughput Sequencing and Stable Isotope Analyses
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作者 Hao Xu Liangliang Huang +10 位作者 Jiao Qin Caiguang Wang Yanan Cheng Hao Liu Yiheng Yang Qiongyuan Su Xiongbo He Yunrong Yan Xiuguo Zhang Zhiqiang Wu Bin Kang 《Ecosystem Health and Sustainability》 CSCD 2024年第5期88-98,共11页
The demersal fish populations constitute a valuable commercial resource in the Beibu Gulf,northern South China.However,our understanding of the ontogenetic dietary shifts of fish,particularly Lagocephalus spadiceus,wh... The demersal fish populations constitute a valuable commercial resource in the Beibu Gulf,northern South China.However,our understanding of the ontogenetic dietary shifts of fish,particularly Lagocephalus spadiceus,which is the most widely distributed fish in the northern South China Sea,is lacking.Therefore,we conducted a study using high-throughput sequencing and stable isotope analyses to examine the diet of L.spadiceus.The individuals were collected during 2 bottom trawl surveys in April and August 2022.The length distribution showed that small L.spadiceus was more abundant in shallow water,whereas large fish were generally found in offshore water.High-throughput sequencing indicated that L.spadiceus mainly fed on crustaceans and fish.Ontogenetic changes in diet composition and stable isotope values were also observed.As L.spadiceus grew,they started preying on larger individuals,specifically fish.The^(15)N enrichment in large fish supported to small fish supports these findings.The trophic niche indicated a segregation between individuals in shallow waters(mostly small fish)and offshore waters(mostly large fish),which helps in reducing the competition within the species.The L.spadiceus occupied the role of mid-predator(trophic level~3.66)and increased with body length and water depth.Consequently,both high-throughput sequencing and stable isotope analyses provided evidence of intraspecific dietary variation and trophic niche partitioning of L.spadiceus in the Beibu Gulf,South China Sea. 展开更多
关键词 high throughput sequencing ontogenetic dietary shifts Lagocephalus spadiceus demersal fish lagocephalus spadiceuswhich bottom trawl surveys stable isotope analyses
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基于转录组学分析昆布多糖对C57BL/6小鼠非增生性糖尿病视网膜病变的影响 被引量:3
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作者 张蕾 张素梅 +7 位作者 杨振 胡韦康 白红枚 周文静 王子涵 李名聪 张胜权 廖荣丰 《安徽医科大学学报》 北大核心 2025年第3期392-398,共7页
目的采用高通量测序技术(RNA-seq)探讨昆布多糖(LAM)对非增生性糖尿病视网膜病变(NPDR)的影响。方法采用链脲佐菌素(STZ)腹腔注射建立糖尿病模型,观察LAM对糖尿病小鼠的影响。将C57BL/6小鼠随机分为对照(Control)、模型(Model)、昆布多... 目的采用高通量测序技术(RNA-seq)探讨昆布多糖(LAM)对非增生性糖尿病视网膜病变(NPDR)的影响。方法采用链脲佐菌素(STZ)腹腔注射建立糖尿病模型,观察LAM对糖尿病小鼠的影响。将C57BL/6小鼠随机分为对照(Control)、模型(Model)、昆布多糖治疗(LAM)组,每组8只小鼠。在建模8周后,LAM组接受为期4周的LAM腹腔注射治疗。记录3组小鼠血糖体质量变化,HE染色检查视网膜病变情况,采用RNA-seq挖掘STZ及LAM作用下糖尿病视网膜病变(DR)的关键差异基因(DEGs)。结果使用STZ可以成功建立DR模型,而LAM可以在一定程度上降低糖尿病小鼠血糖并改善糖尿病小鼠视网膜结构疏松的病理形态。经过RNA-seq对DEG挖掘发现与Control组相比,Model组小鼠视网膜共有214个DEGs,通过富集分析发现DR可通过PI3K-Akt信号通路加重病变程度。Model组与LAM组小鼠视网膜共有DEGs 42个,富集后显示LAM通过中性粒细胞胞外陷阱通路改善其病变程度。早期生长反应因子1(Egr1),FBJ骨肉瘤致癌基因(Fos),核受体亚家族4A成员1(Nr4a1),盐诱导激酶1(Sik1)受STZ调节,而LAM能显著回调其表达,可能与LAM对糖尿病视网膜病变的治疗密切相关。结论DEG可通过PI3K-Akt信号通路加重糖尿病视网膜病变程度。LAM可以通过中性粒细胞胞外陷阱通路减轻糖尿病视网膜病变,Egr1、Fos、Nr4a1、Sik1是LAM治疗STZ诱导DR的关键基因。 展开更多
关键词 高通量测序 昆布多糖 糖尿病视网膜病变 C57BL/6
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基于转录组分析玉米幼苗对盐胁迫的响应 被引量:2
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作者 李涛 屈小玉 +5 位作者 马小英 刘威帆 万猛虎 马风兰 吴娜 刘吉利 《中国农业大学学报》 北大核心 2025年第1期38-54,共17页
为分析玉米耐盐基因及相关代谢途径,选用玉米品种‘禾育157’(HY157)和‘先玉335’(XY335),设置0(CK)、120(S1)、240 mmol/L NaCl(S_(2))3种处理的盆栽试验,测定不同浓度NaCl处理下玉米幼苗的生长指标和转录组表达情况。结果表明:与CK相... 为分析玉米耐盐基因及相关代谢途径,选用玉米品种‘禾育157’(HY157)和‘先玉335’(XY335),设置0(CK)、120(S1)、240 mmol/L NaCl(S_(2))3种处理的盆栽试验,测定不同浓度NaCl处理下玉米幼苗的生长指标和转录组表达情况。结果表明:与CK相比,‘HY 157’在S1和S2处理下分别产生3305和4314个差异表达基因(DEGs),分别鉴定出1900和2457个上调、1405和1857个下调DEGs;‘XY 335’在S1和S2处理下分别产生729和5037个DEGs。其中,293和2500个上调、436和2537个下调DEGs。通过对DEGs进行GO富集分析,2个玉米品种共同的上调DEGs显著富集在过氧化氢、盐胁迫的应答及碳水化合物代谢过程等GO条目。KEGG富集分析表明,差异基因主要参与淀粉和蔗糖代谢、苯丙烷类生物合成、磷酸戊糖途径、苯并恶唑类生物合成、MAPK通路(植物)以及植物激素信号传导等代谢途径。苯丙烷类生物合成途径中,有3个基因在‘XY 335’中特异性地上调表达,‘HY 157’则有5个基因特异性地下调表达。此外,上调的转录因子主要集中在MYB、C2H2、AP2、NAC、bHLH、bZIP、WRKY等基因家族。综上,120和240 mmol/L NaCl胁迫下,‘HY 157’的DEGs以及显著上调表达的转录因子,主要参与调控渗透调节、离子平衡、抗氧化防御等多种适应性反应,从而增强玉米幼苗对盐胁迫的耐受性。 展开更多
关键词 玉米 盐胁迫 高通量测序 转录组 转录因子
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基于微流控技术的工程细胞高通量表型测试技术与装备研究进展 被引量:1
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作者 李爽 郭肖杰 +7 位作者 陈海博 陈思思 笪鑫 李峥辉 刘芹秀 王怡 邢新会 张翀 《中国科学院院刊》 北大核心 2025年第1期91-106,共16页
工程细胞是绿色生物制造的重要基础,如何高效测试并获得目标表型的工程细胞是影响生物制造应用的关键因素之一。近年来,基于微流控技术开发了非培养类型单细胞表型高通量测试装备,以及通过微液滴和微腔室等微型生物反应器实现单细胞生... 工程细胞是绿色生物制造的重要基础,如何高效测试并获得目标表型的工程细胞是影响生物制造应用的关键因素之一。近年来,基于微流控技术开发了非培养类型单细胞表型高通量测试装备,以及通过微液滴和微腔室等微型生物反应器实现单细胞生长代谢的培养类型高通量表型测试装备,实现了工程细胞表型的高通量、自动化、微型化和集成化测试,为工程细胞选育提供了强有力的工具。文章系统综述基于荧光信号、拉曼信号、图像信号、磁信号的非培养类型单细胞表型测试技术与装备,基于皮纳升、微升多尺度微型生物反应器的液滴、微腔室单细胞培养类型测试技术与装备研究进展,并探讨工程细胞高通量测试仪器创制发展趋势,为绿色生物制造工程细胞测试技术研究提供借鉴。 展开更多
关键词 微流控 单细胞 高通量测试 合成生物学 生物制造
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消毒剂对猪粪短期湿式厌氧消化系统性能及微生物群落的变化响应 被引量:1
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作者 吴永明 李坊飞 +8 位作者 吴留兴 张磊 刘亚军 黄学平 刘翔敏 李荣富 池泽涌 张杰 邓觅 《农业工程学报》 北大核心 2025年第9期207-215,共9页
为研究消毒剂对猪粪厌氧发酵系统的影响,选取不同浓度(质量分数0.02%、0.1%、0.5%)卫可(Virkon^(TM))消毒剂进行试验。结果表明:在高浓度Virkon^(TM)胁迫下,厌氧发酵系统出水中总氮(total nitrogen,TN)、氨氮(ammonia nitrogen,NH_(4)^(... 为研究消毒剂对猪粪厌氧发酵系统的影响,选取不同浓度(质量分数0.02%、0.1%、0.5%)卫可(Virkon^(TM))消毒剂进行试验。结果表明:在高浓度Virkon^(TM)胁迫下,厌氧发酵系统出水中总氮(total nitrogen,TN)、氨氮(ammonia nitrogen,NH_(4)^(+)-N)、总磷(total phosphorus,TP)和化学需氧量(chemical oxygen demand,COD)等含量异常剧增,伴随TS和VS的降解率下降。对照组(CK组)和0.02%、0.1%和0.5%Virkon^(TM)试验组(分别记为L组、M组和H组)的最大产CH_(4)速率分别为63.20、71.63、73.10和38.17mL/g且CH_4总产量分别降低4.48%、16.58%(P<0.001)和86.33%(P<0.001)。随着暴露时间的延长,试验组的关键酶活呈先升后降趋势,其中,H组的S-α-GC、S-β-GC、S-ACP、S-NP及S-CAT等土壤酶活被显著性抑制(P<0.05)。进一步结合高通量测序发现,在整个厌氧发酵阶段,H组Ace指数、Chao指数和Shannon指数均显著性低于CK组(P<0.01)。在门水平上,第一优势菌群为厚壁菌门,其次为变形菌门,其中厚壁菌门相对丰度随Virkon^(TM)浓度的上升而降低,而变形菌门则相反;在属水平上,随着厌氧发酵时间的延长,束毛球菌属(Trichococcus)相对丰度均出现不同程度上升,由0.19%~0.39%提升至2.80%~4.20%,而H组中史密斯氏菌属(Smithella)的相对丰度受到极显著性(P<0.001)的抑制,较CK组下降91%。同时通过PICRUSt2功能预测分析发现,各试验组微生物群落COG(clusters of orthologous groups of proteins)功能组成结构差异并不明显,未知功能及氨基酸运输和代谢为主要优势功能;结合KO(KEGG orthology)结果与KEGG(kyoto encyclopedia of genes and genomes)数据库相关基因分析发现,高浓度Virkon^(TM)显著抑制微生物群落的生长代谢活性并削弱厌氧发酵系统的甲烷合成效能,另一方面,却诱导关键功能基因K00531(anfG)的表达活性发生超量级响应,较对照组(CK)激增约272倍。其表达水平的显著上调可能通过强化关键酶活性,使系统对Virkon^(TM)消毒副产物中典型氯代污染物(氯代烷烃及氯代烯烃类化合物)的降解效率获得提升,结果可为猪粪厌氧消化处理提供参考。 展开更多
关键词 消毒剂 厌氧发酵 猪粪 酶活 高通量测序 PICRUSt2
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基于高通量测序技术对口腔扁平苔藓患者相关癌变差异LncRNAs的筛选与分析 被引量:2
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作者 董文亮 黄一丹 +2 位作者 郭文卓 杨慧霞 张敬 《实用口腔医学杂志》 北大核心 2025年第1期80-87,共8页
目的:筛选并分析口腔扁平苔藓(OLP)黏膜组织的长链非编码RNAs(LncRNAs)的癌变相关差异性表达谱,并对其功能进行初步分析,探索其在OLP发生发展过程中可能的作用。方法:收集OLP(糜烂型)病损黏膜组织和正常黏膜组织各5例,应用高通量测序技... 目的:筛选并分析口腔扁平苔藓(OLP)黏膜组织的长链非编码RNAs(LncRNAs)的癌变相关差异性表达谱,并对其功能进行初步分析,探索其在OLP发生发展过程中可能的作用。方法:收集OLP(糜烂型)病损黏膜组织和正常黏膜组织各5例,应用高通量测序技术构建OLP中基因差异表达谱,生物信息学分析得到与口腔扁平苔藓癌变关系密切的LncRNAs。结果:筛选获得400个与OLP相关的LncRNAs,其中250个表达上调,150个表达下调,得到5个与口腔扁平苔藓癌变相关的差异表达LncRNAs:54055、100128560、399717、378825、100130231。结论:筛选得到的OLP病损黏膜中差异表达LncRNAs400个,发现其中5个LncRNAs可能与OLP发病、癌变倾向相关。 展开更多
关键词 长链非编码RNAs 口腔扁平苔藓 高通量测序 生物信息学分析 癌变
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太白贝母鳞茎腐烂病对其根际土壤特性及细菌群落结构的影响 被引量:1
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作者 韩凤 章文伟 +3 位作者 罗川 王黎 谭秋生 林茂祥 《西北农业学报》 北大核心 2025年第7期1324-1333,共10页
为探明太白贝母鳞茎腐烂病对土壤理化性质及细菌群落结构和多样性的影响,以太白贝母健康鳞茎植株、鳞茎腐烂病植株根际土壤和未种植太白贝母土壤壤为材料,测定土壤理化性质,并采用Illumina MiSeq测序技术分析3组样品中细菌群落结构多样... 为探明太白贝母鳞茎腐烂病对土壤理化性质及细菌群落结构和多样性的影响,以太白贝母健康鳞茎植株、鳞茎腐烂病植株根际土壤和未种植太白贝母土壤壤为材料,测定土壤理化性质,并采用Illumina MiSeq测序技术分析3组样品中细菌群落结构多样性、群落结构组成和相对丰度。结果表明,根际土壤中pH、有机质、全氮、全磷、全钾、碱解氮、速效磷、速效钾在健康与感病土中差异显著。3组土壤样品共检测出6544个细菌OTUs,获得42个门类、111个纲、155个目、289个科、479个属的细菌,其中变形菌门、酸杆菌门、拟杆菌门和放线菌门等4门细菌相对丰度均大于10%,为优势菌门;而布氏杆菌属、Candidatus_Solibacter、黄杆菌属、根瘤菌属4属细菌为太白贝母根际土壤中相对丰度均大于3%,为优势菌属。土壤性质与根际微生物之间的相关性表明,土壤pH、有机质、全氮、全磷、全钾、有效磷、速效钾与布氏杆菌属、芽单孢菌属、Candidatus_Solibacter、根瘤菌属、酸热菌属、酸杆菌属及Mucilaginibacter呈显著正相关;与硝化螺菌属、变杆菌属、H16、RB41、鞘氨醇单胞菌属、土生单胞菌属、假单胞杆菌属、费氏杆菌属和黄杆菌属呈显著负相关。 展开更多
关键词 太白贝母 鳞茎腐烂病 根际土壤 细菌多样性 高通量测序
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密度对罗氏沼虾种虾存活率、抱卵率、水质、水体和肠道微生物群落的影响 被引量:2
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作者 李倩 孙丽慧 +6 位作者 张海琪 姜建湖 陈建明 彭俊 杨必成 高令梅 郭建林 《水生生物学报》 北大核心 2025年第4期9-20,共12页
为探讨保种期罗氏沼虾(Macrobrachium rosenbergii)种虾合理的放养密度,实验以温室保种期的种虾为研究对象,雌雄比例2﹕1,雌虾初始体重为(17.95±1.11)g,雄虾初始体重为(21.39±1.63)g,设置3个放养密度:LD(1.0 kg/m^(3))、MD(1.... 为探讨保种期罗氏沼虾(Macrobrachium rosenbergii)种虾合理的放养密度,实验以温室保种期的种虾为研究对象,雌雄比例2﹕1,雌虾初始体重为(17.95±1.11)g,雄虾初始体重为(21.39±1.63)g,设置3个放养密度:LD(1.0 kg/m^(3))、MD(1.5 kg/m^(3))、HD(2.0 kg/m^(3)),研究了密度对罗氏沼虾种虾抱卵率、存活率、水质、水体和肠道微生物群落的影响。结果表明:水质未稳定前,水体中氨氮和亚硝态氮的含量随着放养密度的增加而升高,HD组显著高于LD组(P<0.05)。水质稳定后各密度组之间无显著差异(P>0.05)。LD组和MD组雌虾的抱卵率显著大于HD组(P<0.05),LD组和MD组无显著差异(P>0.05)。存活率随着放养密度的增加显著降低(P<0.05)。放养密度显著影响罗氏沼虾的规格,小规格虾的比例随着放养密度的升高显著增加(P<0.05)。水体微生物群落结果表明,水体中氨氮含量最高时,硝化螺旋菌属(Nitrospira)为HD组的指示物种。肠道微生物结果表明,在相同的采样时间,放养密度对罗氏沼虾肠道微生物菌群组成无显著影响。但当水体中氨氮含量最高时,潜在病原菌柠檬酸杆菌(Citrobacter)的占比在MD组和HD组有所升高,说明密度引起的水质变化显著影响中高密度组的肠道微生物群落组成。综上,建议保种期罗氏沼虾的放养密度以1.0 kg/m^(3)为宜。 展开更多
关键词 养殖密度 水质 高通量测序 水体细菌群落 肠道微生物 种虾 罗氏沼虾
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鸭绿江口海域浮游植物粒级结构的环境差异响应 被引量:1
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作者 宋广军 宋伦 +3 位作者 吴金浩 王召会 胡超魁 刘桂英 《环境科学研究》 北大核心 2025年第1期78-89,共12页
海洋浮游植物面临着与气候及环境变化相关的新挑战,种种迹象表明,海水营养盐浓度下降和失衡,以及海水升温、酸化会导致海洋浮游植物粒级结构趋向小型化,但在自然海域这一趋势缺乏直接的验证与深入研究。本文在黄海北部的鸭绿江口设置了1... 海洋浮游植物面临着与气候及环境变化相关的新挑战,种种迹象表明,海水营养盐浓度下降和失衡,以及海水升温、酸化会导致海洋浮游植物粒级结构趋向小型化,但在自然海域这一趋势缺乏直接的验证与深入研究。本文在黄海北部的鸭绿江口设置了16个采样点,2020年3−12月期间,每月采集一次样品(包括浮游植物环境DNA样品和海水样品),对鸭绿江口海域浮游植物粒级结构和环境指标〔包括氮、磷、硅营养盐,水温、溶解氧(DO)、pH以及化学需氧量(COD)等〕进行了系统分析,利用非度量多维尺度分析(NMDS),筛选出各环境因子不同浓度梯度站位,结合高通量测序和实验室镜检手段对浮游植物粒级分级和定量,以验证鸭绿江口海域浮游植物粒级结构的环境差异响应。结果表明:鸭绿江口海域含氮营养盐平均浓度呈现出东西两侧河口区域较高、中部海域相对较低的分布特征,磷、硅营养盐的分布趋势与氮营养盐基本一致。同时,pH和DO浓度在西侧河口区域相对较低,而COD浓度在该区域相对较高。水温在3−12月期间呈倒U型变化趋势,7月达到最高值。验证结果表明,海水中氮、磷、硅营养盐浓度与小粒级浮游植物生物量均呈负相关,即营养盐浓度越低,小粒级浮游植物生物量占比越高。同时,水温的上升也促进了小粒级浮游植物的生长,使其生物量占比增加。此外,发现小粒级浮游植物对有机物的利用效率高于大粒级浮游植物,且对低氧环境具有一定的耐受性。这表现为小粒级浮游植物生物量占比随着COD浓度的升高而升高,随DO浓度的升高而下降。研究显示,近岸海域氮、磷、硅营养盐浓度下降以及水温上升、缺氧加剧,均可导致浮游植物粒级结构趋于小型化,这可能会对生态系统的稳定和海水贝类养殖业的可持续发展构成潜在威胁。因此在全球气候变化的背景下,建议对河口区域陆源氮、磷等营养盐的调控政策进行实时调整,以利于海洋生态系统的健康和海洋经济可持续发展。 展开更多
关键词 浮游植物 高通量测序 粒级结构 环境差异 鸭绿江口海域
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