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Molecular Simulations of Dynamic Heterogeneity of Segment Motion and Bond Exchange in Polymer Vitrimers
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作者 Lang Shuai Jiang-Long Li +4 位作者 Jian-Long Wen Ying-Ying Xu Shui Yu Bo-Yu Ding Yi-Jing Nie 《Chinese Journal of Polymer Science》 2026年第1期242-255,I0017,共15页
Vitrimers belong to a class of polymeric materials capable of bond exchange reactions,showing great promise for environmental protection and sustainable development.However,studies on the coupling mechanism between th... Vitrimers belong to a class of polymeric materials capable of bond exchange reactions,showing great promise for environmental protection and sustainable development.However,studies on the coupling mechanism between the bond exchange kinetics and segmental dynamics near the glass transition temperature(T_(g))remain scarce.Herein,we employed molecular dynamics simulations to investigate the dynamic heterogeneity of the segment motion and bond exchange in vitrimers.The simulation results revealed that the bond exchange energy barrier exerts a much stronger influence on the bond exchange kinetics than on the segmental dynamics.At lower temperatures,slower segmental relaxation further constraind the bond exchange rate.Additionally,increasing the bond exchange energy barrier markedly enhanced the dynamic heterogeneity of segment motion.A close correlation was observed between heterogeneity and bond exchange.This study elucidated the coupling mechanism between bond exchange and segmental dynamics at the molecular scale,thereby providing a theoretical basis for designing vitrimer materials with tunable dynamic properties. 展开更多
关键词 Molecular dynamics simulations Vitrimers dynamic heterogeneity
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Research on dynamic three-dimensional terrain correction methods of quantitative inversion for airborne gamma-ray spectrometer
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作者 He-Xi Wu Wei-Cheng Li +6 位作者 Rui Qiu Chao Xiong Yi-Ming Lyu Yi-Qiang Xing De-Hao Zhang Zong-Shuo Tao Yang Wang 《Nuclear Science and Techniques》 2026年第5期199-214,共16页
Aerial surveys are dynamic and continuous processes,and there are different height distributions of the ground in the measurement area,which leads to problems such as overlapping measurement areas and inaccurate altit... Aerial surveys are dynamic and continuous processes,and there are different height distributions of the ground in the measurement area,which leads to problems such as overlapping measurement areas and inaccurate altitude correction during the survey process.Commonly used terrain correction methods are based on the concept of finite elementization of ground surface radioactive sources,using GPS coordinates,radar altitude,and ground elevation distribution information from aerial surveys,combined with the sourceless efficiency calibration method to construct a response matrix,which is then inverted for surface nuclide content.However,most of the sourceless efficiency calibration methods used are numerical calculations that consider the body detector as a point detector and do not consider the changes in intrinsic detection efficiency under different incident directions of gamma rays.Therefore,when the altitude of the measurement area varies significantly or the flight altitude of the aerial survey is relatively low,such sourceless efficiency calibration method calculations tend to have a large bias,which affects the accuracy of the terrain correction.To address the above problems,this study employs a novel sourceless efficiency calibration method based on the Boolean operation of the ray deposition process and simplifies the traditional body source measurement model to a surface source measurement model to achieve fast and accurate efficiency calibration.Then,through the discretization of the measurement process,the static measurement process is superposed as equivalent to the dynamic measurement process,and the dynamic measurement response matrix is built and optimized based on the calibration method.Finally,the PSO-MLEM algorithm was used to solve the dynamic measurement response matrix to achieve dynamic terrain correction of aerial survey data.Analysis of the Baiyun'ebo test area revealed that,after applying dynamic terrain correction,the inverted anomalies in uranium(eU),thorium(eTh),and potassium(K)concentrations were closer to ground measurements(within 5.72%-30.79%)and exhibited clearer anomaly boundaries compared to traditional height-based corrections.However,owing to the inherent statistical fluctuations and characteristics of matrix inversion,higher measurement values tend to absorb lower ones,potentially enlarging the anomalous regions.Nevertheless,the highanomaly regions after inversion largely coincided with the ground truth validation,demonstrating that the proposed method can effectively correct airborne gamma spectrometry data. 展开更多
关键词 Airborne gamma-ray spectrum dynamic three-dimensional Terrain correction
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Hardware-in-the-loop space debris simulation method using dynamic optical detection scenarios
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作者 Chengeng Gong Na Li +2 位作者 Huijie Zhao Qingbo Gan Jingyi Yan 《Astronomical Techniques and Instruments》 2026年第2期145-157,共13页
The threat posed by space debris to space security is continuously increasing.Optical observation is the main detection method for space debris,but the variety of observation geometries in available measurement datase... The threat posed by space debris to space security is continuously increasing.Optical observation is the main detection method for space debris,but the variety of observation geometries in available measurement datasets is limited.Therefore,simulations are required to supplement observational data.Hardware-in-the-loop(HIL)simulations can provide high-quality simulated optical detection data at a reasonable cost,but existing hardware-in-the-loop methods are only adapted to simple motion scenarios.To extend the simulation ability to complex space motion scenarios,here we propose an optical hardware-in-the-loop space debris simulation method,relying on dynamic detection scenarios,that uses a collaborative scenario-modality-feature simulation scheme to simulate variable observation geometries and to obtain sequential space debris simulation data covering a variety of modalities and scenarios.We apply the proposed space debris detection method to ground-based and space-based simulation experiments and analyze target features within the simulated detection data to demonstrate the usefulness of such simulations.Our simulation method is applicable to space debris optical detection under diverse observation conditions and to multidimensional space debris feature characterization. 展开更多
关键词 Space debris HIL simulation Optical detection dynamic observation geometry
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Influence of CaO-SiO_(2)-Al_(2)O_(3)-MgO slag structure on dissolution behavior of Al_(2)O_(3):a molecular dynamics simulation
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作者 Yi-Hong Li Ming-Ming Lu +4 位作者 Rui Wang Dong Wang Xin Hu Peng Zhang Qiang Zhu 《Journal of Iron and Steel Research International》 2026年第1期110-124,共15页
The structural changes in the CaO-SiO_(2)-Al_(2)O_(3)-MgO slag system with varying CaO contents were investigated through molecular dynamics(MD)simulations,and its effect on the dissolution behavior of alumina inclusi... The structural changes in the CaO-SiO_(2)-Al_(2)O_(3)-MgO slag system with varying CaO contents were investigated through molecular dynamics(MD)simulations,and its effect on the dissolution behavior of alumina inclusions was characterized by the Kullback-Leibler(KL)divergence.The slag structure analysis revealed that the[AlO]tetrahedral structure was the primary network structure in the slag.With increasing the CaO content,the non-bridge oxygen(NBO)content in the slag structure increases,and the bridge oxygen(BO)content decreases,thereby reducing the complexity of the slag network structure.Raman spectroscopy detection verifies the results of the MD simulations.The results indicated that the dissolution rate of alumina inclusions accelerates with increasing the CaO content in the slag,owing to the reduced complexity of the slag network structure and the enhanced interatomic interactions.The simulation results for the dissolution of alumina inclusions were consistent with theoretical calculations based on the slag inclusion capacity and the dimensionless dissolution rate of inclusions.Radial distribution function analysis demonstrated that the interaction between atoms in the slag system and alumina inclusions strengthens,increasing the dissolution rate of alumina inclusions.The[AlO_(6)]octahedral structure of the alumina inclusions is disrupted,forming BO structures,which in turn enhances the complexity of the slag network structure,slowing the dissolution rate of alumina inclusions.In contrast,the slag system with a higher CaO content has a relatively simpler network structure,promoting faster alumina inclusion dissolution. 展开更多
关键词 Molecular dynamics simulation Slag structure Dissolution behaviour Alumina inclusion Dissolution rate
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EDIS:A simulation software for dynamic ion intercalation/deintercalation processes in electrode materials
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作者 Liqi Wang Ruijuan Xiao Hong Li 《Chinese Physics B》 2026年第1期188-203,共16页
As the core determinant of lithium-ion battery performance,electrode materials play a crucial role in defining the battery's capacity,cycling stability,and durability.During charging and discharging,electrode mate... As the core determinant of lithium-ion battery performance,electrode materials play a crucial role in defining the battery's capacity,cycling stability,and durability.During charging and discharging,electrode materials undergo complex ion intercalation and deintercalation processes,accompanied by defect formation and structural evolution.However,the microscopic mechanisms underlying processes such as cation disordering,lattice oxygen loss,and stage structure formation are still not fully understood.To address these challenges,we have developed the Electrode Dynamic Ion Intercalation/Deintercalation Simulator(EDIS),a software platform designed to simulate the dynamic processes of ion intercalation and deintercalation in electrode materials.Leveraging high-precision machine learning potentials,EDIS can efficiently model structural evolution and lithium-ion diffusion behavior under various states of charge and discharge,achieving accuracy approaching that of quantum mechanical methods in relevant chemical spaces.The software supports quantitative analysis of how variations in lithium-ion concentration and distribution affect lithium-ion transport properties,enables evaluation of the impact of structural defects,and allows for tracking of both structural evolution and transport characteristics during continuous cycling.EDIS is versatile and can be extended to sodium-ion batteries and related systems.By enabling in-depth analysis of these microscopic processes,EDIS provides a robust theoretical tool for mechanistic studies and the rational design of high-performance electrode materials for next-generation lithium-ion batteries. 展开更多
关键词 electrode materials ion(de)intercalation dynamic simulation machine learning potential
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Dislocation Propagation and Mechanical Properties in Poly(p-phenylene terephthalamide) Fibers: An All-atom Molecular Dynamics Simulation
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作者 Jia Wan Ran Chen +1 位作者 Chuan-Fu Luo Xiao-Niu Yang 《Chinese Journal of Polymer Science》 2026年第2期549-559,I0017,共12页
This study uses all-atom molecular dynamics simulations to investigate the dislocation propagation, stress transmission, and mechanical properties in poly(p-phenylene terephthalamide) fibers under uniaxial tension. Th... This study uses all-atom molecular dynamics simulations to investigate the dislocation propagation, stress transmission, and mechanical properties in poly(p-phenylene terephthalamide) fibers under uniaxial tension. The results indicate that the dislocation propagates and the stress transfers not only along the fiber axis but also between adjacent molecular chains through hydrogen bonds, demonstrating their influence on the yield behavior. As the degree of polymerization increases, breakage of covalent bonds and interchain slippage contribute to the yield of fibers together. This work provides theoretical guidance for the design and manufacturing of high-performance fibers. 展开更多
关键词 Molecular dynamic simulation Poly(p-phenylene terephthalamide)fiber Mechanical property Hydrogen bond
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Enabling Intrinsic Antiferroelectricity in Two-dimensional NbOCl_(2):Molecular Dynamics Simulations based on Deep Learning Interatomic Potential
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作者 Jiawei Mao Yinglu Jia +2 位作者 Gaoyang Gou Shi Liu Xiao Cheng Zeng 《Chinese Physics Letters》 2026年第1期156-178,共23页
Compared to the well-studied two-dimensional(2D)ferroelectricity,the appearance of 2D antiferroelectricity is much rarer,where local dipoles from the nonequivalent sublattices within 2D monolayers are oppositely orien... Compared to the well-studied two-dimensional(2D)ferroelectricity,the appearance of 2D antiferroelectricity is much rarer,where local dipoles from the nonequivalent sublattices within 2D monolayers are oppositely oriented.Using NbOCl_(2) monolayer with competing ferroelectric(FE)and antiferroelectric(AFE)phases as a 2D material platform,we demonstrate the emergence of intrinsic antiferroelectricity in NbOCl_(2) monolayer under experimentally accessible shear strain,along with new functionality associated with electric field-induced AFE-to-FE phase transition.Specifically,the complex configuration space accommodating FE and AFE phases,polarization switching kinetics,and finite temperature thermodynamic properties of 2D NbOCl_(2) are all accurately predicted by large-scale molecular dynamics simulations based on deep learning interatomic potential model.Moreover,room temperature stable antiferroelectricity with low polarization switching barrier and one-dimensional collinear polarization arrangement is predicted in shear-deformed NbOCl_(2) monolayer.The transition from AFE to FE phase in 2D NbOCl_(2) can be triggered by a low critical electric field,leading to a double polarization–electric(P–E)loop with small hysteresis.A new type of optoelectronic device composed of AFE-NbOCl_(2) is proposed,enabling electric“writing”and nonlinear optical“reading”logical operation with fast operation speed and low power consumption. 展开更多
关键词 d monolayers local dipoles nonequivalent sublattices intrinsic antiferroelectricity two dimensional nbocl d antiferroelectricity experimentally accessible shear strainalong molecular dynamics simulations
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Dynamical analysis and circuit simulation of a new three-dimensional chaotic system 被引量:1
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作者 王爱元 凌志浩 《Chinese Physics B》 SCIE EI CAS CSCD 2010年第7期96-101,共6页
This paper reports a new three-dimensional autonomous chaotic system. It contains six control parameters and three nonlinear terms. Two cross-product terms are respectively in two equations. And one square term is in ... This paper reports a new three-dimensional autonomous chaotic system. It contains six control parameters and three nonlinear terms. Two cross-product terms are respectively in two equations. And one square term is in the third equation. Basic dynamic properties of the new system are investigated by means of theoretical analysis, numerical simulation, sensitivity to initial, power spectrum, Lyapunov exponent, and Poincar~ diagrams. The dynamic properties affected by variable parameters are also analysed. Finally, the chaotic system is simulated by circuit. The results verify the existence and implementation of the system. 展开更多
关键词 chaotic system dynamical properties circuit simulation nonlinear analysis
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Three-Dimensional Simulation of Hydrodynamic Mechanism of Fluidized Bed Methanation
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作者 Xiaojia Wang Danyang Shao +2 位作者 Delu Chen Yutong Gong Fengxia An 《Journal of Renewable Materials》 EI 2023年第7期3155-3175,共21页
Organic solid waste(OSW)contains many renewable materials.The pyrolysis and gasification of OSW can realize resource utilization,and its products can be used for methanation reaction to produce synthetic natural gas i... Organic solid waste(OSW)contains many renewable materials.The pyrolysis and gasification of OSW can realize resource utilization,and its products can be used for methanation reaction to produce synthetic natural gas in the specific reactor.In order to understand the dynamic characteristics of the reactor,a three-dimensional numerical model has been established by the method of Computational Fluid Dynamics(CFD).Along the height of the reactor,the particle distribution in the bed becomes thinner and the mean solid volume fraction decreases from 4.18%to 0.37%.Meanwhile,the pressure fluctuation range decreased from 398.76 Pa at the entrance to a much lower value of 74.47 Pa at the exit.In this simulation,three parameters of gas inlet velocity,operating temperature and solid particle diameter are changed to explore their influences on gas-solid multiphase flow.The results show that gas velocity has a great influence on particle distribution.When the gas inlet velocity decreases from 6.51 to 1.98 m/s,the minimum height that particles can reach decreases from 169 to 100 mm.Additionally,as the operating temperature increases,the particle holdup inside the reactor changes from 0.843%to 0.700%.This indicates that the particle residence time reduces,which is not conducive to the follow-up reaction.Moreover,with the increase of particle size,the fluctuation range of the pressure at the bottom of the reactor increases,and its standard deviation increases from 55.34 to 1266.37 Pa. 展开更多
关键词 Organic solid waste methanation reactor multiphase flow three-dimensional simulation
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Dynamic impact simulation tests of deep roadways affected by high stress and fault slip 被引量:1
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作者 Qi Wang Yuncai Wang +3 位作者 Zhenhua Jiang Hongpu Kang Chong Zhang Bei Jiang 《International Journal of Mining Science and Technology》 2025年第4期519-537,共19页
As coal mining depth increases,the combined effects of high stress,mining stress,and fault structures make dynamic impact hazards more frequent.The reproduction of dynamic impact phenomena is basis for studying their ... As coal mining depth increases,the combined effects of high stress,mining stress,and fault structures make dynamic impact hazards more frequent.The reproduction of dynamic impact phenomena is basis for studying their occurrence patterns and control mechanisms.Physical simulation test represents an efficacious methodology.However,there is currently a lack of simulation devices that can effectively simulate two types of dynamic impact phenomena,including high stress and fault slip dynamic impact.To solve aforementioned issues,the physical simulation test system for dynamic impact in deep roadways developed by authors is employed to carry out comparative tests of high stress and fault slip dynamic impact.The phenomena of high stress and fault slip dynamic impact are reproduced successfully.A comparative analysis is conducted on dynamic phenomena,stress evolution,roadway deformation,and support force.The high stress dynamic impact roadway instability mode,which is characterized by the release of high energy accompanied by symmetric damage,and the fault slip dynamic impact roadway instability mode,which is characterized by the propagation of unilateral stress waves accompanied by asymmetric damage,are clarified.On the basis,the differentiated control concepts for different types of dynamic impact in deep roadways are proposed. 展开更多
关键词 Deep roadway dynamic impact simulation High stress Fault slip Occurrence law
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Multi-target inhibition property of Persicaria hydropiper phytochemicals against gram-positive and gram-negative bacteria via molecular docking,dynamics simulation,and ADMET analysis 被引量:1
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作者 Golak Majumdar Shyamapada Mandal 《Digital Chinese Medicine》 2025年第1期76-89,共14页
Objective To evaluate the antibacterial potential of bioactive compounds from Persicaria hydropiper(L.)(P.hydropiper)against bacterial virulence proteins through molecular docking(MD)and experimental validation.Method... Objective To evaluate the antibacterial potential of bioactive compounds from Persicaria hydropiper(L.)(P.hydropiper)against bacterial virulence proteins through molecular docking(MD)and experimental validation.Methods Six bioactive compounds from P.hydropiper were investigated:catechin(CAT1),hyperin(HYP1),ombuin(OMB1),pinosylvin(PSV1),quercetin 3-sulfate(QSF1),and scutellarein(SCR1).Their binding affinities and potential binding pockets were assessed through MD against four bacterial target proteins with Protein Data Bank identifiers(PDB IDs):topoisomerase IV from Escherichia coli(E.coli)(PDB ID:3FV5),Staphylococcus aureus(S.aureus)gyrase ATPase binding domain(PDB ID:3U2K),CviR from Chromobacterium violaceum(C.violaceum)(PDB ID:3QP1),and glycosyl hydrolase from Pseudomonas aeruginosa(P.aeruginosa)(PDB ID:5BX9).Molecular dynamics simulations(MDS)were performed on the most promising compound-protein complexes for 50 nanoseconds(ns).Drug-likeness was evaluated using Lipinski's Rule of Five(RO5),followed by absorption,distribution,metabolism,excretion,and toxicity(ADMET)analysis using SwissADME and pkCSM web servers.Antibacterial activity was evaluated through disc diffusion assays,testing both individual compounds and combinations with conventional antibiotics[cefotaxime(CTX1,30μg/disc),ceftazidime(CAZ1,30μg/disc),and piperacillin(PIP1,100μg/disc)].Results MD revealed strong binding affinity(ranging from-9.3 to-5.9 kcal/mol)for all compounds,with CAT1 showing exceptional binding to 3QP1(-9.3 kcal/mol)and 5BX9(-8.4 kcal/mol).MDS confirmed the stability of CAT1-protein complexes with binding free energies of-84.71 kJ/mol(5BX9-CAT1)and-95.59 kJ/mol(3QP1-CAT1).Five compounds(CAT1,SCR1,PSV1,OMB1,and QSF1)complied with Lipinski's RO5 and showed favorable ADMET profiles.All compounds were non-carcinogenic,with CAT1 classified in the lowest toxicity class(VI).In antibacterial assays,CAT1 demonstrated significant activity against both gram-positive bacteria[Streptococcus pneumoniae(S.pneumoniae),S.aureus,and Bacillus cereus(B.cereus)][zone diameter of inhibition(ZDI):10-22 mm]and gram-negative bacteria[Acinetobacter baumannii(A.baumannii),E.coli,and P.aeruginosa](ZDI:14-27 mm).Synergistic effects were observed when CAT1 was combined with antibiotics and the growth inhibitory indices(GII)was 0.69-1.00.Conclusion P.hydropiper bioactive compounds,particularly CAT1,show promising antibacterial potential through multiple mechanisms,including direct inhibition of bacterial virulence proteins and synergistic activity with conventional antibiotics.The favorable pharmacological properties and low toxicity profiles support their potential development as therapeutic agents against bacterial infections. 展开更多
关键词 Persicaria hydropiper phytochemicals Molecular docking Molecular dynamics simulation Bacterial pathogenicity-related proteins PHARMACOKINETICS
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Molecular Dynamics Simulations of Micromechanical Behaviours for AlCoCrFeNi_(2.1)High Entropy Alloy during Nanoindentation 被引量:1
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作者 Ji-Peng Yang Hai-Feng Zhang +1 位作者 Hong-Chao Ji Nan Jia 《Acta Metallurgica Sinica(English Letters)》 2025年第2期218-232,共15页
Eutectic high entropy alloys are noted for their excellent castability and comprehensive mechanical properties.The excellent mechanical properties are closely related to the activation and evolution of deformation mec... Eutectic high entropy alloys are noted for their excellent castability and comprehensive mechanical properties.The excellent mechanical properties are closely related to the activation and evolution of deformation mechanisms at the atomic scale.In this work,AlCoCrFeNi2.1 alloy is taken as the research object.The mechanical behaviors and deformation mechanisms of the FCC and B2 single crystals with different orientations and the FCC/B2 composites with K-S orientation relationship during nanoindentation processes are systematically studied by molecular dynamics simulations.The results show that the mechanical behaviors of FCC single crystals are significantly orientation-dependent,meanwhile,the indentation force of[110]single crystal is the lowest at the elastic-plastic transition point,and that for[100]single crystal is the lowest in plastic deformation stage.Compared with FCC,the stress for B2 single crystals at the elastic-plastic transition point is higher.However,more deformation systems such as stacking faults,twins and dislocation loops are activated in FCC single crystal during the plastic deformation process,resulting in higher indentation force.For composites,the flow stress increases with the increase of B2 phase thickness during the initial stage of deformation.When indenter penetrates heterogeneous interface,the significantly increased deformation system in FCC phase leads to a significant increase in indentation force.The mechanical behaviors and deformation mechanisms depend on the component single crystal.When the thickness of the component layer is less than 15 nm,the heterogeneous interfaces fail to prevent the dislocation slip and improve the indentation force.The results will enrich the plastic deformation mechanisms of multi-principal eutectic alloys and provide guidance for the design of nanocrystalline metallic materials. 展开更多
关键词 High entropy alloy Mechanical behavior Plastic deformation mechanism NANOINDENTATION Molecular dynamics simulation
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Dynamic modeling of a three-dimensional braided composite thin plate considering braiding directions 被引量:1
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作者 Chentong GAO Huiyu SUN +1 位作者 Jianping GU W.M.HUANG 《Applied Mathematics and Mechanics(English Edition)》 2025年第1期123-138,共16页
Currently,there are a limited number of dynamic models available for braided composite plates with large overall motions,despite the incorporation of three-dimensional(3D)braided composites into rotating blade compone... Currently,there are a limited number of dynamic models available for braided composite plates with large overall motions,despite the incorporation of three-dimensional(3D)braided composites into rotating blade components.In this paper,a dynamic model of 3D 4-directional braided composite thin plates considering braiding directions is established.Based on Kirchhoff's plate assumptions,the displacement variables of the plate are expressed.By incorporating the braiding directions into the constitutive equation of the braided composites,the dynamic model of the plate considering braiding directions is obtained.The effects of the speeds,braiding directions,and braided angles on the responses of the plate with fixed-axis rotation and translational motion,respectively,are investigated.This paper presents a dynamic theory for calculating the deformation of 3D braided composite structures undergoing both translational and rotational motions.It also provides a simulation method for investigating the dynamic behavior of non-isotropic material plates in various applications. 展开更多
关键词 three-dimensional(3D)braided composite braiding direction composite thin plate large overall motion dynamic model
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Discovery of selective HDAC6 inhibitors driven by artificial intelligence and molecular dynamics simulation approaches 被引量:1
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作者 Xingang Liu Hao Yang +10 位作者 Xinyu Liu Minjie Mou Jie Liu Wenying Yan Tianle Niu Ziyang Zhang He Shi Xiangdong Su Xuedong Li Yang Zhang Qingzhong Jia 《Journal of Pharmaceutical Analysis》 2025年第8期1860-1872,共13页
Increasing evidence showed that histone deacetylase 6(HDAC6)dysfunction is directly associated with the onset and progression of various diseases,especially cancers,making the development of HDAC6-targeted anti-tumor ... Increasing evidence showed that histone deacetylase 6(HDAC6)dysfunction is directly associated with the onset and progression of various diseases,especially cancers,making the development of HDAC6-targeted anti-tumor agents a research hotspot.In this study,artificial intelligence(AI)technology and molecular simulation strategies were fully integrated to construct an efficient and precise drug screening pipeline,which combined Voting strategy based on compound-protein interaction(CPI)prediction models,cascade molecular docking,and molecular dynamic(MD)simulations.The biological potential of the screened compounds was further evaluated through enzymatic and cellular activity assays.Among the identified compounds,Cmpd.18 exhibited more potent HDAC6 enzyme inhibitory activity(IC_(50)=5.41 nM)than that of tubastatin A(TubA)(IC_(50)=15.11 nM),along with a favorable subtype selectivity profile(selectivity index z 117.23 for HDAC1),which was further verified by the Western blot analysis.Additionally,Cmpd.18 induced G2/M phase arrest and promoted apoptosis in HCT-116 cells,exerting desirable antiproliferative activity(IC_(50)=2.59 mM).Furthermore,based on long-term MD simulation trajectory,the key residues facilitating Cmpd.18's binding were identified by decomposition free energy analysis,thereby elucidating its binding mechanism.Moreover,the representative conformation analysis also indicated that Cmpd.18 could stably bind to the active pocket in an effective conformation,thus demonstrating the potential for in-depth research of the 2-(2-phenoxyethyl)pyridazin-3(2H)-one scaffold. 展开更多
关键词 Artificial intelligence Virtual screening Compound-protein interaction Molecular dynamic simulation Selective HDAC6 inhibitor
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A Hybrid Simulation-Experimental Method for Deriving Equivalent Dynamic Parameters of O-Ring Support Systems
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作者 LIU Yi YE He +3 位作者 ZHANG Lingfeng LI Shujia CHEN Ge WANG Yongxing 《Journal of Donghua University(English Edition)》 2025年第4期425-434,共10页
The high-speed winding spindle employs a flexible support system incorporating rubber O-rings.By precisely configuring the structural parameters and the number of the O-rings,the spindle can stably surpass its critica... The high-speed winding spindle employs a flexible support system incorporating rubber O-rings.By precisely configuring the structural parameters and the number of the O-rings,the spindle can stably surpass its critical speed points and maintain operational stability across the entire working speed range.However,the support stiffness and damping of rubber O-rings exhibit significant nonlinear frequency dependence.Conventional experimental methods for deriving equivalent stiffness and damping,based on the principle of the forced non-resonance method,require fabricating custom setups for each O-ring specification and conducting vibration tests at varying frequencies,resulting in low efficiency and high costs.This study proposes a hybrid simulation-experimental method for dynamic parameter identification.Firstly,the frequency-dependent dynamic parameters of a specific O-ring support system are experimentally obtained.Subsequently,a corresponding parametric finite element model is established to simulate and solve the equivalent elastic modulus and equivalent stiffness-damping coefficient of this O-ring support system.Ultimately,after iterative simulation,the simulated and experimental results achieve a 99.7%agreement.The parametric finite element model developed herein can directly simulate and inversely estimate frequency-dependent dynamic parameters for O-rings of different specifications but identical elastic modulus. 展开更多
关键词 O-RING equivalent dynamic parameter forced non-resonance method inverse parameter estimation dynamic simulation
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Molecular dynamics simulations of collision cascades in polycrystalline tungsten
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作者 Lixia Liu Mingxuan Jiang +3 位作者 Ning Gao Yangchun Chen Wangyu Hu Hiuqiu Deng 《Chinese Physics B》 2025年第4期468-476,共9页
Using molecular dynamics methods,simulations of collision cascades in polycrystalline tungsten(W)have been conducted in this study,including different primary-knock-on atom(PKA)directions,grain sizes,and PKA energies ... Using molecular dynamics methods,simulations of collision cascades in polycrystalline tungsten(W)have been conducted in this study,including different primary-knock-on atom(PKA)directions,grain sizes,and PKA energies between 1 keV and 150 keV.The results indicate that a smaller grain size leads to more defects forming in grain boundary regions during cascade processes.The impact of high-energy PKA may cause a certain degree of distortion of the grain boundaries,which has a higher probability in systems with smaller grain sizes and becomes more pronounced as the PKA energy increases.The direction of PKA can affect the formation and diffusion pathways of defects.When the PKA direction is perpendicular to the grain boundary,defects preferentially form near the grain boundary regions;by contrast,defects are more inclined to form in the interior of the grains.These results are of great significance for comprehending the changes in the performance of polycrystalline W under the high-energy fusion environments and can provide theoretical guidance for further optimization and application of W-based plasma materials. 展开更多
关键词 collision cascades molecular dynamics simulations TUNGSTEN POLYCRYSTALLINE
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Improving the reliability of classical molecular dynamics simulations in battery electrolyte design
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作者 Xin He Yujie Zhang +5 位作者 Haomiao Li Min Zhou Wei Wang Ruxing Wang Kai Jiang Kangli Wang 《Journal of Energy Chemistry》 2025年第2期34-41,I0002,共9页
Explorations into new electrolytes have highlighted the critical impact of solvation structure on battery performance,Classical molecular dynamics(CMD)using semi-empirical force fields has become an essential tool for... Explorations into new electrolytes have highlighted the critical impact of solvation structure on battery performance,Classical molecular dynamics(CMD)using semi-empirical force fields has become an essential tool for simulating solvation structures.However,mainstream force fields often lack accuracy in describing strong ion-solvent interactions,causing disparities between CMD simulations and experimental observations.Although some empirical methods have been employed in some of the studies to address this issue,their effectiveness has been limited.Our CMD research,supported by quantum chemical calculations and experimental data,reveals that the solvation structure is influenced not only by the charge model but also by the polarization description.Previous empirical approaches that focused solely on adjusting ion-solvent interaction strengths overlooked the importance of polarization effects.Building on this insight,we propose integrating the Drude polarization model into mainstream force fields and verify its feasibility in carbonate,ether,and nitrile electrolytes.Our experimental results demonstrate that this approach significantly enhances the accuracy of CMD-simulated solvation structures.This work is expected to provide a more reliable CMD method for electrolyte design,shielding researchers from the pitfalls of erroneous simulation outcomes. 展开更多
关键词 ELECTROLYTE Classical molecular dynamics Solvation structure simulations
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Dynamics Simulation and Optimization of Hydraulic Excavator Working Device
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作者 Dongjun He 《机械工程与设计(中英文版)》 2025年第2期1-6,共6页
The performance and efficiency of hydraulic excavators heavily depend on the design and optimization of their working devices.The working device,which consists of the boom,arm,and bucket,plays a crucial role in determ... The performance and efficiency of hydraulic excavators heavily depend on the design and optimization of their working devices.The working device,which consists of the boom,arm,and bucket,plays a crucial role in determining the machine's digging capacity,stability,and overall operational efficiency.This paper presents a comprehensive study on the dynamics simulation and optimization of hydraulic excavator working devices.The paper outlines the fundamental principles of dynamic modeling,incorporating multi-body dynamics and hydraulic system analysis.It further explores various simulation techniques to evaluate the performance of the working device under varying operational conditions,including load and hydraulic system effects.The study also addresses performance optimization,focusing on multi-objective optimization methods that balance multiple factors such as energy efficiency,speed,and load capacity.Additionally,the paper discusses key factors influencing performance,such as mechanical design,material properties,and operational conditions.The results of the dynamic simulations and optimization analyses demonstrate potential improvements in operational efficiency and system stability,providing a valuable framework for the design and enhancement of hydraulic excavator working devices. 展开更多
关键词 Hydraulic Excavator Working Device dynamic Modeling Performance Optimization Multi-body dynamics Hydraulic System simulation Design Optimization Multi-objective Optimization Excavator Performance
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A molecular dynamics simulation route towards Eu-doped multi-component transparent spectral conversion glass-ceramics
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作者 Xiuxia Xu Chenhao Wang +7 位作者 Di Wang Wenyan Zheng Zhiyu Liu Jincheng Du Xusheng Qiao Xianping Fan Zhiyu Wang Guodong Qian 《Journal of Rare Earths》 2025年第1期146-152,I0006,共8页
Eu^(2+)doped fluorosilicate glass-ceramics containing BaF_(2) nanocrystals have high potential as spectral conversion materials for organic solar cells.However,it is difficult to realize the efficient design of BaF_(2... Eu^(2+)doped fluorosilicate glass-ceramics containing BaF_(2) nanocrystals have high potential as spectral conversion materials for organic solar cells.However,it is difficult to realize the efficient design of BaF_(2):Eu^(2+)doped fluorosilicate glass and to vividly observe the glass microstructure in experiment through traditional trial-and-error glass preparation method.BaF_(2):Eu^(2+)doped fluorosilicate glassceramics with high transparency,and high photoluminescence(PL)performance were predicted,designed and prepared via molecular dynamics(MD)simulation method.By MD simulation prediction,self-organized nanocrystallization was realized to inhibit the abnormal growth of nanocrystals due to[AlO_(4)]tetrahedra formed in the fluoride-oxide interface.The introduction of NaF reduces the effective phonon energy of the glass because Na+will prompt Al^(3+)to migrate from the fluoride phase to the silicate phase and interface.The local environment of Eu^(2+)is optimized by predicting the doping concentration of EuF_(3) and 2 mol%EuF3 is the best concentration in this work.Glass-ceramics sample GC2Eu as spectral conversion layer was successfully applied on organic solar cells to obtain more available visible phonons with a high photoelectric conversion efficiency(PCE).This work confirms the guidance of molecular dynamics simulation methods for fluorosilicate glasses design. 展开更多
关键词 Molecular dynamics simulation Fluorosilicateglass Spectral conversion Organic solarcell RAREEARTHS
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Influence of Intermolecular Forces and Spatial Effects on the Mechanical Properties of Silicone Sealant by Molecular Dynamics Simulation
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作者 Wen Qi Yu-Fei Du +2 位作者 Bo-Han Chen Gui-Lei An Chun Lu 《Computers, Materials & Continua》 2025年第11期2763-2780,共18页
In the production process of silicone sealant,mineral oil is used to replace methyl silicone oil plasticizer in silicone sealant to reduce costs and increase efficiency.However,the silicone sealant content in mineral ... In the production process of silicone sealant,mineral oil is used to replace methyl silicone oil plasticizer in silicone sealant to reduce costs and increase efficiency.However,the silicone sealant content in mineral oil is prone to premature aging,which significantly reduces the mechanical properties of the silicone sealant and severely affects its service life.At the same time,there are few reports on the simulation research of the performance of silicone sealant.In this study,three mixed system models of crosslinking silicone sealant/plasticizer are constructed by the molecular dynamics simulationmethod,and the effect of three influencing factors,namely,crosslinking degree of silicone sealant,plasticizer content and external temperature on the mechanical properties of silicone sealant system is analyzed.The results show that at room temperature,the mechanical properties of the silicone sealant system are enhanced with the increase of its crosslinking degree;At a high crosslinking degree,with the increase of plasticizer content,themechanical properties of the silicone sealant system show an overall decreasing trend.When the methyl silicone oil in the range of 20%,themechanical properties of the silicone sealant appeared tobe a small degree of enhancement;As the temperature increases,the doped mineral oil mechanical properties of silicone sealant declined significantly,while doped with methyl silicone oil silicone sealant and doped with double-ended vinyl silicone oil silicone sealant mechanical properties have better heat resistance.It will provide scientific theoretical guidance for improving and predicting the mechanical properties of silicone sealant. 展开更多
关键词 Silicone sealant molecular dynamic simulation MICROSTRUCTURE mechanical property cross-linking
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