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基于生物信息学分析探索SYNGR4表达对肝细胞癌的影响
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作者 王雨婷 胡斯雨 +1 位作者 王燕 邱志远 《黑龙江医学》 2025年第17期2064-2067,共4页
目的:探讨突触素4(SYNGR4)基因在肝细胞癌中的表达、预后意义及免疫浸润的关系。方法:从癌症基因组图谱(TCGA)下载泛癌和肝细胞癌所有原始RNA测序数据及临床资料,利用R4.2.1软件分析SYNGR4基因在肝细胞癌组织中表达及与预后的关系。通... 目的:探讨突触素4(SYNGR4)基因在肝细胞癌中的表达、预后意义及免疫浸润的关系。方法:从癌症基因组图谱(TCGA)下载泛癌和肝细胞癌所有原始RNA测序数据及临床资料,利用R4.2.1软件分析SYNGR4基因在肝细胞癌组织中表达及与预后的关系。通过基因富集分析(GSEA)分析SYNGR4基因相关的生物学功能和信号通路。基于单样本基因集富集分析(ssGSEA)分析SYNGR4是否与免疫细胞浸润水平相关。结果:TCGA结果显示,SYNGR4在泛癌和肝细胞癌组织中表达水平明显上调;Kapalan-Meier生存分析结果显示,SYNGR4表达与患者不良预后相关。免疫浸润分析显示SYNGR4表达与CD8+T细胞浸润水平呈负相关。结论:SYNGR4可作为判断SYNGR4预后和免疫浸润的生存标志物。 展开更多
关键词 肝细胞癌 突触素4 预后 免疫浸润
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SYNGR4 and PLEKHB1 deregulation in motor neurons of amyotrophic lateral sclerosis models: potential contributions to pathobiology
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作者 Rita F.Marques Kent E.Duncan 《Neural Regeneration Research》 SCIE CAS CSCD 2022年第2期266-270,共5页
Amyotrophic lateral sclerosis is the most common adult-onset neurodegenerative disease affecting motor neurons. Its defining feature is progressive loss of motor neuron function in the cortex, brainstem, and spinal co... Amyotrophic lateral sclerosis is the most common adult-onset neurodegenerative disease affecting motor neurons. Its defining feature is progressive loss of motor neuron function in the cortex, brainstem, and spinal cord, leading to paralysis and death. Despite major advances in identifying genes that can cause disease when mutated and model the disease in animals and cellular models, it still remains unclear why motor symptoms suddenly appear after a long pre-symptomatic phase of apparently normal function. One hypothesis is that age-related deregulation of specific proteins within key cell types, especially motor neurons themselves, initiates disease symptom appearance and may also drive progressive degeneration. Genome-wide in vivo cell-type-specific screening tools are enabling identification of candidates for such proteins. In this minireview, we first briefly discuss the methodology used in a recent study that applied a motor neuron-specific RNASeq screening approach to a standard model of TAR DNA-binding protein-43(TDP-43)-driven amyotrophic lateral sclerosis. A key finding of this study is that synaptogyrin-4 and pleckstrin homology domain-containing family B member 1 are also deregulated at the protein level within motor neurons of two unrelated mouse models of mutant TDP-43 driven amyotrophic lateral sclerosis. Guided by what is known about molecular and cellular functions of these proteins and their orthologs, we outline here specific hypotheses for how changes in their levels might potentially alter cellular physiology of motor neurons and detrimentally affect motor neuron function. Where possible, we also discuss how this information could potentially be used in a translational context to develop new therapeutic strategies for this currently incurable, devastating disease. 展开更多
关键词 amyotrophic lateral sclerosis glucagon-like peptide-1 receptor motor neuron disease mouse model NEURODEGENERATION PHOSPHATIDYLSERINE pleckstrin homology domain synaptogyrin TAR DNA-binding protein-43 vesicle transport
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