Sequencing technology has developed rapidly in recent years. Complete or nearly complete mitochondrial genomes(mitogenomes) of 155 species from 47 families in Heteroptera have been sequenced. However, the amounts of m...Sequencing technology has developed rapidly in recent years. Complete or nearly complete mitochondrial genomes(mitogenomes) of 155 species from 47 families in Heteroptera have been sequenced. However, the amounts of mitogenomes between those families are unbalanced, which makes it difficult to correctly discern the patterns of mitogenome rearrangement in Heteroptera. Among 21 species from ten families, ten variations in mitogenome rearrangement had been previously reported, among which the translocation between tRNA-Thr and tRNA-Pro was considered as a synapomorphy of Pyrrhocoroidea based on two mitogenomes. As only one mitogenome in each of Largidae and Pyrrhocoridae had been sequenced to conclude the synapomorphy, more mitogenomes of Pyrrhocoroidea need to be explored. In this study, additional two mitogenomes of Pyrrhocoroidea(Macrocheraia grandis grandis(Gray, 1832) and Myrmoplasta mira Gerst-cker, 1892) were sequenced. Both of them also possess the same translocation between tRNA-Thr and tRNA-Pro, which reaffirms that this kind of rearrangement is a molecular synapomorphy of Pyrrhocoroidea. Moreover, we discovered a more complex rearrangement in Myrmoplasta mira, in which six nearly identical duplications of tRNA-Thr were found located downstream of tRNA-Pro. Considering the high biodiversity of Heteroptera, more mitogenomic studies are needed to improve our knowledge about mitogenome rearrangements and the potential synapomorphies.展开更多
Deducing the function of certain sites within a protein necessitates a priori recognition of the strength of selective pressure. Currently, statistical method is the only option to evaluate the degree of conservation....Deducing the function of certain sites within a protein necessitates a priori recognition of the strength of selective pressure. Currently, statistical method is the only option to evaluate the degree of conservation. In the statistical framework, the types of selective pressure can be divided into classifications of negative, nearly neutral and positive. However, such quantitative methods may omit some crucial amino acid sites among the nearly neutral results. In this study, we propose that the cladistic information can be also important to evaluate the functional importance of various amino acid sites. The ribosomal proteins of 62 eukaryotic species were chosen as the case for statistical and cladistic analysis. The evolutionary changes of each site in the aligned sequences were matched on a currently well-accepted cladogram of eukaryotes. Hundreds of synapomorphic sites were discovered in various clades, in which only part of them were suggested to be potentially significant in the statistical framework. Notably, the mutation on His213 of RPL10 in human beings, which are synapomorphic in vertebrates but only be identified as being under neutral selection, is account for the disease Autism. Therefore, the cladistic information can be complementary to the statistical framework in understanding lineage-specific selection event. Additionally, the bias in the accumulation of apomorphic amino acids is significant when going from the Chordata to the Mammalia lineages. This study emphasizes the value of analyzing transcriptomic and proteomic data in a cladistic way to recognize the presence of group-specific selection on various sites in proteins.展开更多
基金financially supported by the Ministry of Culture of the Czech Republic(DKRVO 2019/5.I.a,National Museum,00023272)
文摘Sequencing technology has developed rapidly in recent years. Complete or nearly complete mitochondrial genomes(mitogenomes) of 155 species from 47 families in Heteroptera have been sequenced. However, the amounts of mitogenomes between those families are unbalanced, which makes it difficult to correctly discern the patterns of mitogenome rearrangement in Heteroptera. Among 21 species from ten families, ten variations in mitogenome rearrangement had been previously reported, among which the translocation between tRNA-Thr and tRNA-Pro was considered as a synapomorphy of Pyrrhocoroidea based on two mitogenomes. As only one mitogenome in each of Largidae and Pyrrhocoridae had been sequenced to conclude the synapomorphy, more mitogenomes of Pyrrhocoroidea need to be explored. In this study, additional two mitogenomes of Pyrrhocoroidea(Macrocheraia grandis grandis(Gray, 1832) and Myrmoplasta mira Gerst-cker, 1892) were sequenced. Both of them also possess the same translocation between tRNA-Thr and tRNA-Pro, which reaffirms that this kind of rearrangement is a molecular synapomorphy of Pyrrhocoroidea. Moreover, we discovered a more complex rearrangement in Myrmoplasta mira, in which six nearly identical duplications of tRNA-Thr were found located downstream of tRNA-Pro. Considering the high biodiversity of Heteroptera, more mitogenomic studies are needed to improve our knowledge about mitogenome rearrangements and the potential synapomorphies.
基金supported by the National Natural Science Foundation of China(31222051,J1210005)
文摘Deducing the function of certain sites within a protein necessitates a priori recognition of the strength of selective pressure. Currently, statistical method is the only option to evaluate the degree of conservation. In the statistical framework, the types of selective pressure can be divided into classifications of negative, nearly neutral and positive. However, such quantitative methods may omit some crucial amino acid sites among the nearly neutral results. In this study, we propose that the cladistic information can be also important to evaluate the functional importance of various amino acid sites. The ribosomal proteins of 62 eukaryotic species were chosen as the case for statistical and cladistic analysis. The evolutionary changes of each site in the aligned sequences were matched on a currently well-accepted cladogram of eukaryotes. Hundreds of synapomorphic sites were discovered in various clades, in which only part of them were suggested to be potentially significant in the statistical framework. Notably, the mutation on His213 of RPL10 in human beings, which are synapomorphic in vertebrates but only be identified as being under neutral selection, is account for the disease Autism. Therefore, the cladistic information can be complementary to the statistical framework in understanding lineage-specific selection event. Additionally, the bias in the accumulation of apomorphic amino acids is significant when going from the Chordata to the Mammalia lineages. This study emphasizes the value of analyzing transcriptomic and proteomic data in a cladistic way to recognize the presence of group-specific selection on various sites in proteins.
