Diversity-biomass relationships(DBRs)in terrestrial ecosystems tend to vary across spatial scales,but,particularly in hyperdiverse forests,the mechanisms driving these trends remain uncertain.Until now,few have simult...Diversity-biomass relationships(DBRs)in terrestrial ecosystems tend to vary across spatial scales,but,particularly in hyperdiverse forests,the mechanisms driving these trends remain uncertain.Until now,few have simultaneously investigated the connections between tree species diversity,stand structural diversity,mycorrhizal associations,and ecosystem functioning.In addition,DBRs have only been studied at limited spatial scales,with limited focus on the direct and indirect effects of environmental factors.We addressed these research gaps using a 30-ha forest dynamics plot located in Pu'er City,Southwest China.Through piecewise structural equation models,we quantified the direct effects of tree species diversity(α,β,γ),stand structural diversity,mycorrhizal associations(AM,EcM),and the environmental factors(soil fertility and topography),as well as the indirect effects of the environmental factors on aboveground tree biomass across spatial scales ranging from 400 to 230,400 m^(2).We hypothesized that complex interactions among these factors underpin the variation in DBRs in natural ecosystems across spatial scales.Our results showed that environmental conditions indirectly affected the tree biomass via changes in tree species diversity,and these effects became stronger as the spatial scale increased.At small to moderate spatial scales,environmental factors were more predictive of tree biomass than tree species diversity(or its components);the effects of stand structural diversity on biomass also gradually increased with spatial scale.Conversely,from the intermediate to the largest spatial scales,mycorrhizal associations gradually became the best predictors of DBR dynamics.Our research offers novel empirical evidence demonstrating the importance of environmental conditions,structural diversity,and mycorrhizal associations in shaping cross-scale DBRs.Future comprehensive studies should consider these factors to assess the mechanisms shaping scale-dependent DBRs in complex natural ecosystems.展开更多
Background: The importance of structurally diverse forests for the conservation of biodiversity and provision of a wide range of ecosystem services has been widely recognised. However, tools to quantify structural div...Background: The importance of structurally diverse forests for the conservation of biodiversity and provision of a wide range of ecosystem services has been widely recognised. However, tools to quantify structural diversity of forests in an objective and quantitative way across many forest types and sites are still needed, for example to support biodiversity monitoring. The existing approaches to quantify forest structural diversity are based on small geographical regions or single forest types, typically using only small data sets.Results: Here we developed an index of structural diversity based on National Forest Inventory(NFI) data of BadenWurttemberg, Germany, a state with 1.3 million ha of diverse forest types in different ownerships. Based on a literature review, 11 aspects of structural diversity were identified a priori as crucially important to describe structural diversity. An initial comprehensive list of 52 variables derived from National Forest Inventory(NFI) data related to structural diversity was reduced by applying five selection criteria to arrive at one variable for each aspect of structural diversity. These variables comprise 1) quadratic mean diameter at breast height(DBH), 2) standard deviation of DBH, 3) standard deviation of stand height, 4) number of decay classes, 5) bark-diversity index, 6) trees with DBH ≥ 40 cm, 7) diversity of flowering and fructification, 8) average mean diameter of downed deadwood, 9) mean DBH of standing deadwood, 10) tree species richness and 11) tree species richness in the regeneration layer. These variables were combined into a simple,additive index to quantify the level of structural diversity, which assumes values between 0 and 1. We applied this index in an exemplary way to broad forest categories and ownerships to assess its feasibility to analyse structural diversity in large-scale forest inventories.Conclusions: The forest structure index presented here can be derived in a similar way from standard inventory variables for most other large-scale forest inventories to provide important information about biodiversity relevant forest conditions and thus provide an evidence-base for forest management and planning as well as reporting.展开更多
Structural diversity is the key attribute of a stand. A set of biodiversity measures in ecology was introduced in forest management for describing stand structure, of which Shannon information entropy (Shannon index) ...Structural diversity is the key attribute of a stand. A set of biodiversity measures in ecology was introduced in forest management for describing stand structure, of which Shannon information entropy (Shannon index) has been the most widely used measure of species diversity. It is generally thought that tree size diversity could serve as a good proxy for height diversity. However, tree size diversity and height diversity for stand structure is not completely consistent. Stand diameter cannot reflect height information completely. Either tree size diversity or height diversity is one-dimensional information entropy measure. This paper discussed the method of multiple-dimensional information entropy measure with the concept of joint entropy. It is suggested that joint entropy is a good measure for describing overall stand structural diversity.展开更多
The structural diversity in urban forests is highly important to protect biodiversity. In particular, fruit trees and bush species, cavity-bearing trees and coarse, woody debris provide habitats for animals to feed, n...The structural diversity in urban forests is highly important to protect biodiversity. In particular, fruit trees and bush species, cavity-bearing trees and coarse, woody debris provide habitats for animals to feed, nest and hide. Improper silvicultural practices, intensive recreational use and illegal harvesting lead to a decline in the structural diversity in forests within larger metropolitan cities. It is important to monitor the structural diversity at definite time intervals using effective technologies with a view to instituting the necessary conservation measures. The use of satellite images seems to be appropriate to this end. Here we aimed to identify the associations between the textural features derived from the satellite images with different spatial resolutions and the structural diversity indices in urban forest stands (Shannon-Wiener index, complexity index, dominance index and density of wildlife trees). RapidEye images with a spatial resolution of 5 m × 5 m, ASTER images with a spatial resolution of 15 m × 15 m and Landsat-8 ETM satellite images with a spatial resolution of 30 m × 30 m were used in this study. The first-order (standard deviation of gray levels) and second order (GLCM entropy, GLCM contrast and GLCM correlation) textural features were calculated from the satellite images. When associations between textural features in the images and the structural diversity indices were assessed using the Pearson correlation coefficient, very high associations were found between the image textural features and the diversity indices. The highest association was found between the standard deviation of gray levels (SDGL<sub>RAP</sub>) derived from RVI<sub>RAP</sub> of RapidEye image and the Shannon-Wiener index (H <sub>h</sub>) calculated on the basis of tree height (R <sup>2</sup> = 0.64). The findings revealed that RapidEye satellite images with a spatial resolution of 5 m × 5 m are most suitable for estimating the structural diversity in urban forests.展开更多
Four types of luminescent properties of metal-organic frameworks（MOFs） with formulas [Cd（1,2-BIYB）2（H2O）2]n·n（AQ-1,5-DAD）（1）, [Cd（AQ-1,5-DAD）（1,3-BIYB）2]n（2）, [Cd（1,3-BIYB）]n·n（AQ-1,5-DAD...Four types of luminescent properties of metal-organic frameworks（MOFs） with formulas [Cd（1,2-BIYB）2（H2O）2]n·n（AQ-1,5-DAD）（1）, [Cd（AQ-1,5-DAD）（1,3-BIYB）2]n（2）, [Cd（1,3-BIYB）]n·n（AQ-1,5-DAD）·n H2O（3）, and [Zn（1,4-BIYB）2]n·n（AQ-1,5-DAD）2·6H2O（4）,（Na2AQ-1,5-DAD = anthraquinone-1,5-disulfonic acid disodium, 1,2-BIYB = 1,2-bis（imidazol-1-ylmethyl）benzene, 1,3-BIYB = 1,3-bis（imidazol-1-ylmethyl）benzene, 1,4-BIYB = 1,4-bis（imidazol-1-ylmethyl）benzene） have been synthesized based on a rare sulfonate and imidazole Co-ligand system under different conditions. The structural features of four types of MOFs 1-4 are as follows： MOFs 1 show a 3D supramolecular compound in which the double one-dimensional chains are further cross-linked by hydrogen bonds. 2 exhibits a 2D network constructed by two different 1D chains. 3 features a 2D supramolecular network, in which the 1D chains and AQ-1,5-DAD are arranged alternately through hydrogen bonds. 4 posseses a 3D supramolecular structure constructed by a 2D network and one-dimensional hydrogen bonding chains. All compounds 1-4 are characterized by elemental analysis, infrared spectroscopy, and thermogravimetric analysis. The luminescence properties of 1-4 have been investigated.展开更多
Solvothermal reaction of manganese（II） salt with monosodium 2-sulfoterephthalate（2-NaH2stp） and two multi-pyridine N-containing auxiliary ligands results in the formation of two new complexes formulated with [Mn2...Solvothermal reaction of manganese（II） salt with monosodium 2-sulfoterephthalate（2-NaH2stp） and two multi-pyridine N-containing auxiliary ligands results in the formation of two new complexes formulated with [Mn2（Hstp）2（bpp）2（H2O）4]（1） and [Mn3（stp）2（tpy）3（H2O）]（H2O）5（2）（bpp = benz-2,3-pyrimidine-[2,3-f]-1,10-phenanthroline, tpy = 2,2＇：6＇,2＇＇-terpyridine）. X-ray diffraction structural analyses of two complexes reveal their structural diversity（0D and 1D） due to the difference of auxiliary ligands. 1 is a discrete structure, in which the Mn（Ⅱ） ion is hexa-coordinated with one stp, one bpp ligand and two water molecules. Complex 2 is a one-dimensional（1D） chain-like structure with three crystallographically independent Mn（Ⅱ） ions. The photoluminescent properties could be assigned to the π-π＊ transition of 2-sulfoterephthalate ligands.展开更多
The structural diversity of different tree-crop associations were studied at Gachabari Sal forest area of Madhupur Garh on Buffer and Peripheral Zone during 2006. The total density, basal area of trees in the Buffer a...The structural diversity of different tree-crop associations were studied at Gachabari Sal forest area of Madhupur Garh on Buffer and Peripheral Zone during 2006. The total density, basal area of trees in the Buffer and Peripheral Zone were 155.5 trees·hm^(-2), 795.4 trees·hm^(-2) and 3.9 m2·hm-2, 5.8 m^2·hm^(-2), respectively. No regeneration and natural trees were found in Peripheral Zone and the Zone is totally occupied by exotic species where the Buffer Zone comprised of both natural and exotic trees. The Peripheral Zone belonged to younger and smaller trees whereas the Buffer Zone belonged to mixture of smaller, taller, younger and mature trees simultaneously. For the practicing of different agroforestry systems both Zones have lost their original characters of Sal forest.展开更多
The original version of this article unfortunately contained three mistakes. （1） The spelling of the [A. Nishad＇] name was incorrect. The corrected spelling is given below.
Decision trees are a kind of off-the-shelf predictive models, and they have been successfully used as the base learners in ensemble learning. To construct a strong classi- fier ensemble, the individual classifiers sho...Decision trees are a kind of off-the-shelf predictive models, and they have been successfully used as the base learners in ensemble learning. To construct a strong classi- fier ensemble, the individual classifiers should be accurate and diverse. However, diversity measure remains a mystery although there were many attempts. We conjecture that a deficiency of previous diversity measures lies in the fact that they consider only behavioral diversity, i.e., how the classifiers behave when making predictions, neglecting the fact that classifiers may be potentially different even when they make the same predictions. Based on this recognition, in this paper, we advocate to consider structural diversity in addition to behavioral diversity, and propose the TMD （tree matching diversity） measure for decision trees. To investigate the usefulness of TMD, we empirically evaluate performances of selective ensemble approaches with decision forests by incorporating different diversity measures. Our results validate that by considering structural and behavioral diversities together, stronger ensembles can be constructed. This may raise a new direction to design better diversity measures and ensemble methods.展开更多
Ribosomal RNAs are important because they catalyze the synthesis of peptides and proteins.Comparative studies of the secondary structure of 18S rRNA have revealed the basic locations of its many length-conserved and l...Ribosomal RNAs are important because they catalyze the synthesis of peptides and proteins.Comparative studies of the secondary structure of 18S rRNA have revealed the basic locations of its many length-conserved and lengthvariable regions.In recent years,many more sequences of 18S rDNA with unusual lengths have been documented in GenBank.These data make it possible to recognize the diversity of the secondary and tertiary structures of 18S rRNAs and to identify the length-conserved parts of 18S rDNAs.The longest 18S rDNA sequences of almost every known eukaryotic phylum were included in this study.We illustrated the bioinformatics-based structure to show that,the regions that are more length-variable,regions that are less length-variable,the splicing sites for introns,and the sites of A-minor interactions are mostly distributed in different parts of the 18S rRNA.Additionally,this study revealed that some length-variable regions or insertion positions could be quite close to the functional part of the 18S rRNA of Foraminifera organisms.The tertiary structure as well as the secondary structure of 18S rRNA can be more diverse than what was previously supposed.Besides revealing how this interesting gene evolves,it can help to remove ambiguity from the alignment of eukaryotic 18S rDNAs and to improve the performance of 18S rDNA in phylogenetic reconstruction.Six nucleotides shared by Archaea and Eukaryota but rarely by Bacteria are also reported here for the first time,which might further support the supposed origin of eukaryote from archaeans.展开更多
Chromones serve as versatile heterocyclic scaffolds and are common core structural units in a variety of natural products and bioactive organic molecules.This area of research,at the forefront of organic synthesis,has...Chromones serve as versatile heterocyclic scaffolds and are common core structural units in a variety of natural products and bioactive organic molecules.This area of research,at the forefront of organic synthesis,has seen remarkable progress in recent years.Among the various synthetic methodologies for accessing chromone scaffolds,the tandem annulation of o-hydroxyaryl enaminones has emerged as a robust and practical strategy.This approach,through direct vinyl C-H bond functionalization of o-hydroxyaryl enaminones,enables the construction of structurally diverse chromones(including 3-substituted chromones,2-substituted chromones,and 2,3-disubstituted chromones)and their derivatives since mid-2019.In this review,we highlight recent advances in the synthesis of various types of chromones and their derivatives,achieved through tandem direct vinyl C-H activation and chromone annulation of o-hydroxyaryl enaminones.展开更多
The present investigation aims at unveiling the main causes of the recorded disparate phylogeographic patterning among the two highly dispersive coastal crab species Carcinus aestuarii and Pachygrapsus marmoratus in t...The present investigation aims at unveiling the main causes of the recorded disparate phylogeographic patterning among the two highly dispersive coastal crab species Carcinus aestuarii and Pachygrapsus marmoratus in the Mediterranean Sea.For this purpose,available mitochondrial and nuclear data for both species were re-analyzed and investigated for genetic polymorphism and differentiation patterns across three defined geographic scales in their distribution ranges,but also across the same locations in the Mediterranean Sea.The temporal frame of genetic diversification was also determined for both species in order to check whether observed differences in phylogeographic patterns among these coastal decapods could be attributed to different evolutionary histories.The obtained results revealed a more variable and diversified gene pool in the green crab C.aestuarii than the one recorded in the marbled crab P.marmoratus.Lack of significant correlation between pairwise genetic dissimilarities observed among C.aestuarii populations and those detected for P.marmoratus was notably discerned across the same defined Mediterranean locations.This finding indicates that the pattern of pairwise genetic differentiation does not vary in the same way in both examined crab species.Significant outputs of population genetic differentiation,retrieved within both species,were shown to be differently associated with the potential effects of various kinds of isolation processes(related to geography,environment and biogeographic boundary).Evolutionary history reconstruction showed older genetic diversification event in C.aestuarii than the one recorded in P.marmoratus.These recorded temporal frames suggest different modes of genetic diversification in both crab species(glacial vicariance for C.aestuarii and interglacial dispersal for P.marmoratus).They may also provide an explanation for the recorded differences in variation of patterns of population genetic diversity and structure,when integrated with species ecological requirements and life-history traits.展开更多
The relationship between Solidago canadensis L. invasion and soil microbial community diversity including functional and structure diversities was studied across the invasive gradients varying from 0 to 40%, 80%, and ...The relationship between Solidago canadensis L. invasion and soil microbial community diversity including functional and structure diversities was studied across the invasive gradients varying from 0 to 40%, 80%, and 100% coverage of Solidago canadensis L. using sole carbon source utilization profiles analyses, principle component analysis （PCA） and phospholipid fatty acids （PLFA） profiles analyses. The results show the characteristics of soil microbial community functional and structure diversity in invaded soils strongly changed by Solidago canadensis L. invasion. Solidago canadensis L. invasion tended to result in higher substrate richness, and functional diversity. As compared to the native and ecotones, average utilization of specific substrate guilds of soil microbe was the highest in Solidago canadensis L. monoculture. Soil microbial functional diversity in Solidago canadensis L. monoculture was distinctly separated from the native area and the ecotones. Aerobic bacteria, fungi and actinomycetes population significantly increased but anaerobic bacteria decreased in the soil with Solidago canadensis L. monoculture. The ratio of cyl9：0 to 18：1 co7 gradually declined but mono/sat and fung/bact PLFAs increased when Solidago canadensis L. became more dominant. The microbial community composition clearly separated the native soil from the invaded soils by PCA analysis, especially 18： lco7c, 16： lco7t, 16： lco5c and 18：2co6, 9 were present in higher concentrations for exotic soil. In conclusion, Solidago canadensis L. invasion could create better soil conditions by improving soil microbial community structure and functional diversity, which in turn was more conducive to the growth ofSolidago canadensis L.展开更多
This study aims to assess the impact of monospecific Tectona grandis forest plantation on the soil mite abundance and diversity. To achieve these objectives, two sites situated in Ivory Coast were investigated. The fi...This study aims to assess the impact of monospecific Tectona grandis forest plantation on the soil mite abundance and diversity. To achieve these objectives, two sites situated in Ivory Coast were investigated. The first, a primary forest was characterized by a very weak human activities whereas the second, a teak plantation was characterized by a high disturbance performed during the planting. After extracting, sorted and description, 116 mite species were described in the two sites. Mite densities were lower in teak plantation and also higher in the litter and decreased to the depth in both sites. Species richness re- corded in teak plantation （52 species） was significantly lower compared to primary forest （98 species）. The same trend was ob- served for Oribatida but not for Gamasida. The lower Oribatida （5 vs. 17） and higher Oribatida （24 vs. 41） were recorded respec- tively in teak plantation and primary forest. Mite Shannon index and evenness were significantly different between sites. High Jaccard index values and the appearance of exclusive species in both habitats showed that the sites are very distinct. Total number of species recorded corresponded to 58%-63% of the total number of species estimated by ACE and Chao 1＆2 estimators, indi- cating that the sampling effort was not sufficient. Mite abundance and diversity varied depending on the characteristics of habi- tats. Chemical element （Corn, Ctot, Ntot, and SOM） values were lower in teak plantation （disturbed habitat） and significantly dif- ferent to primary forest in the topsoil. Apart from litter height, soil depth, pH and C/N ratio, others variables were strongly corre- lated to mite abundance and diversity [Current Zoology 59 （5）： 633-643, 2013].展开更多
Tree species diversity and population structure at different community types were described and analyzed for primary and secondary lowland moist deciduous forests in Tripura. Overall 10,957 individual trees belonging ...Tree species diversity and population structure at different community types were described and analyzed for primary and secondary lowland moist deciduous forests in Tripura. Overall 10,957 individual trees belonging to 46 family, 103 genera and 144 species were counted at ≥30 cm DBH （diameter at breast height） using 28 permanent belt transects with a size of 1 ha （10 m × 1000 m）. Four different tree communities were identified. The primary forests was dominated by Shorea robusta （mean density 464.77 trees.ha^-1, 105 species） and Schima wallichii （336.25 trees.ha^-1, 82 species）, while the secondary forests was dominated by Tectona grandis （333.88 trees.ha^-1, 105 species） and Hevea brasiliensis （299.67 trees.ha^-1, 82 species）. Overall mean basal area in this study was 18.01m2.ha^-1; the maximum value was recorded in primary Shorea forest （26.21 m2.ha^-1）. Mean density and diversity indices were differed significantly within four different communities. No significant differences were observed in number of species, genera, family and tree basal cover area. Significant relationships were found between the species richness and different tree population groups across the communities. Results revealed that species diversity and density were increased in those forests due to past disturbances which resulted in slow accumu- lation of native oligarchic small tree species. Seventeen species were recorded with 〈2 individuals of which Saraca asoka （Roxb.） de Wilde and Entada phaseoloides （L.） Men＇. etc. extensively used in local ethnomedicinal formulations. The present S. robusta Gaertn dominated forest was recorded richer （105 species） than other reported studies. Moraceae was found more speciose family instead of Papilionaceae and Euphorbiaceae than other Indian moist deciduous forests. Seasonal phenological gap in such moist deciduous forests influenced the population of Trachypithecus pileatus and capped langur. The analysis of FIV suggested a slow trend of shifting the population of Lamiaceae group by Moraceae species in secondary T. grandis L. dominated community.展开更多
Arbuscular mycorrhizal fungi （AMF） have great potential for assisting heavy metal hyperaccumulators in the remediation of contaminated soils. However, little information is available about the community composition ...Arbuscular mycorrhizal fungi （AMF） have great potential for assisting heavy metal hyperaccumulators in the remediation of contaminated soils. However, little information is available about the community composition of AMF under natural conditions in soils contaminated by antimony （Sb）. The objective of this study was to investigate the characteristics of AMF molecular diversity, and to explore the effects of Sb content and soil properties on the AMF community structure in an Sb mining area. Four Sb mine spoils and one adjacent reference area were selected from around the Xikuangshan mine in southern China. The association of AMF molecular diversity and community composition with the rhizosphere soils of the dominant plant species was studied by Polymerase Chain Reaction-Denaturing Gradient Gel Electrophoresis （PCR-DGGE）. Results from all five studied sites showed that the diversity of AMF decreased with increasing Sb concentration. Principal component analysis （PC_A） indicated that the AMF community structure was markedly different among these groups. Further redundancy analysis （RDA） showed that Sb contamination was the dominating factor influencing the AMF community structure in the Sb mine area. However, the multivariate analysis showed that, apart from the soil Sb content, extractable nitrogen content and organic matter content also attributed to AMF sequence distribution type. Some AMF sequences were only found in the highly contaminated area and these might be ideal candidates for improving phytoremediation efficiency in Sb mining regions. Gene sequencing analysis revealed that most species were affiliated with Gloraus, suggesting that Glomus was the dominant AMF genus in the studied Sb mining area.展开更多
Pepper（Capsicum spp.） is an important vegetable crop in the world. Now the pepper in China contributes one-third of the world＇s peppers production. Genetic diversity of the pepper germplasm of China is expected int...Pepper（Capsicum spp.） is an important vegetable crop in the world. Now the pepper in China contributes one-third of the world＇s peppers production. Genetic diversity of the pepper germplasm of China is expected interesting to know. To explore the structure of genetic diversity in Chinese pepper germplasm resources and possible relationship with cultivar types or geographic origin, we sampled and compared 372 Gen Bank pepper accessions（local cultivars and landraces） from 31 provinces, autonomous regions and municipalities of China and 31 additional accessions from other countries. These accessions were genotyped using 28 simple sequence repeat（SSR） markers spanning the entire pepper genome. We then investigated the genetic structure of the sampled collection using model-based analysis in STRUCTURE v2.3.4 and examined genetic relationships by the unweighted pair-group method of mathematical averages（UPGMA） in MEGA. In addition to geographic origin, we evaluated eight plant and fruit traits. In total, 363 alleles were amplified using the 28 SSR primers. Gene diversity, polymorphism information content and heterozygosity of the 28 SSR loci were estimated as 0.09–0.92, 0.08–0.92 and 0.01–0.34, respectively. The UPGMA cluster analysis clearly distinguished Capsicum annuum L. from other cultivated pepper species. Population structure analysis of the 368 C. annuum accessions uncovered three genetic groups which also corresponded to distinct cultivar types with respect to the plant and fruit descriptors. The genetic structure was also related to the geographic origin of the landraces. Overall results indicate that genetic diversity of Chinese pepper landraces were structured by migration of genotypes followed by human selection for cultivar types in agreement with consumption modes and adaptation to the highly diversified agro-climatic conditions.展开更多
Island species and their ecosystems play an important role in global biodiversity preservation,and many vulnerable island species are conservation priorities.Although insular habitat likely facilitates the species div...Island species and their ecosystems play an important role in global biodiversity preservation,and many vulnerable island species are conservation priorities.Although insular habitat likely facilitates the species diversification process,it may also aggravate the fragility of these species with high risk of inbreeding.The Shedao pit-viper Gloydius shedaoensis is an island endemic species with an extremely high population density,which has been categorized as vulnerable in the IUCN(International Union for the Conservation of Nature and Natural Resources)Red List.We collected 13,148 SNP(Single Nucleotide Polymorphism)from across its genome and examined its genetic diversity and demographic history.The Shedao pit-viper has a low genetic diversity but shows no sign of inbreeding.Furthermore,population genetic structure analysis,including the neighbor-joining tree,principal coordinate analysis,clustering,and spatial autocorrelation,revealed a general lack of spatial structure.Only the isolation by distance residues suggested a weak patchiness.Overall,the population is nearly panmictic and gene flow is evenly distributed across the island.A large number of individuals,small size of the island,and the lack of population structure likely all contribute to the lack of inbreeding in this species.We also detected signs of male-biased dispersal,which likely is another inbreeding avoidance strategy.Historical demographic analysis suggested that the historical population size and distribution of the species are much larger than their current ones.The multiple transgressive–regressive events since the Late Pleistocene are likely the main cause of the population size changes.Taken together,our results provide a basic scientific foundation for the conservation of this interesting and important species.展开更多
A set of 50 rice genotypes comprising landraces, local selections, and improved varieties were characterized using simple sequence repeat（SSR） and inter simple sequence repeat（ISSR） markers to study genetic divers...A set of 50 rice genotypes comprising landraces, local selections, and improved varieties were characterized using simple sequence repeat（SSR） and inter simple sequence repeat（ISSR） markers to study genetic diversity and population structure. Following unweighted pair group method with arithmetic mean based clustering using binary data of polymorphic markers, the genotypes were grouped into 5 clusters and 11 sub-clusters, whereas population structure analysis separated 50 rice genotypes into 5 sub-populations. Grouping of rice genotypes showed better resemblance with the pedigree information of the genotypes. Both genetic diversity and population structure analysis separated majority of the improved varieties from landraces and local selections. Some of the SSR markers amplified unique alleles which were specific to a particular genotype and could distinguish them from the rest. The results indicate that these rice genotypes exhibit a higher genetic diversity and can be very useful in rice improvement program.展开更多
基金funded by Fundamental Research Funds of Chinese Academy of Forestry(No.CAFYBB2021ZA002).
文摘Diversity-biomass relationships(DBRs)in terrestrial ecosystems tend to vary across spatial scales,but,particularly in hyperdiverse forests,the mechanisms driving these trends remain uncertain.Until now,few have simultaneously investigated the connections between tree species diversity,stand structural diversity,mycorrhizal associations,and ecosystem functioning.In addition,DBRs have only been studied at limited spatial scales,with limited focus on the direct and indirect effects of environmental factors.We addressed these research gaps using a 30-ha forest dynamics plot located in Pu'er City,Southwest China.Through piecewise structural equation models,we quantified the direct effects of tree species diversity(α,β,γ),stand structural diversity,mycorrhizal associations(AM,EcM),and the environmental factors(soil fertility and topography),as well as the indirect effects of the environmental factors on aboveground tree biomass across spatial scales ranging from 400 to 230,400 m^(2).We hypothesized that complex interactions among these factors underpin the variation in DBRs in natural ecosystems across spatial scales.Our results showed that environmental conditions indirectly affected the tree biomass via changes in tree species diversity,and these effects became stronger as the spatial scale increased.At small to moderate spatial scales,environmental factors were more predictive of tree biomass than tree species diversity(or its components);the effects of stand structural diversity on biomass also gradually increased with spatial scale.Conversely,from the intermediate to the largest spatial scales,mycorrhizal associations gradually became the best predictors of DBR dynamics.Our research offers novel empirical evidence demonstrating the importance of environmental conditions,structural diversity,and mycorrhizal associations in shaping cross-scale DBRs.Future comprehensive studies should consider these factors to assess the mechanisms shaping scale-dependent DBRs in complex natural ecosystems.
基金supported by a grant from the Ministry of Science,Research and the Arts of Baden-Württemberg(7533-10-5-78)to Jürgen BauhusFelix Storch received additional support through the BBW ForWerts Graduate Program
文摘Background: The importance of structurally diverse forests for the conservation of biodiversity and provision of a wide range of ecosystem services has been widely recognised. However, tools to quantify structural diversity of forests in an objective and quantitative way across many forest types and sites are still needed, for example to support biodiversity monitoring. The existing approaches to quantify forest structural diversity are based on small geographical regions or single forest types, typically using only small data sets.Results: Here we developed an index of structural diversity based on National Forest Inventory(NFI) data of BadenWurttemberg, Germany, a state with 1.3 million ha of diverse forest types in different ownerships. Based on a literature review, 11 aspects of structural diversity were identified a priori as crucially important to describe structural diversity. An initial comprehensive list of 52 variables derived from National Forest Inventory(NFI) data related to structural diversity was reduced by applying five selection criteria to arrive at one variable for each aspect of structural diversity. These variables comprise 1) quadratic mean diameter at breast height(DBH), 2) standard deviation of DBH, 3) standard deviation of stand height, 4) number of decay classes, 5) bark-diversity index, 6) trees with DBH ≥ 40 cm, 7) diversity of flowering and fructification, 8) average mean diameter of downed deadwood, 9) mean DBH of standing deadwood, 10) tree species richness and 11) tree species richness in the regeneration layer. These variables were combined into a simple,additive index to quantify the level of structural diversity, which assumes values between 0 and 1. We applied this index in an exemplary way to broad forest categories and ownerships to assess its feasibility to analyse structural diversity in large-scale forest inventories.Conclusions: The forest structure index presented here can be derived in a similar way from standard inventory variables for most other large-scale forest inventories to provide important information about biodiversity relevant forest conditions and thus provide an evidence-base for forest management and planning as well as reporting.
基金National Natural Science Foundation of China (Grant No. 30371157)
文摘Structural diversity is the key attribute of a stand. A set of biodiversity measures in ecology was introduced in forest management for describing stand structure, of which Shannon information entropy (Shannon index) has been the most widely used measure of species diversity. It is generally thought that tree size diversity could serve as a good proxy for height diversity. However, tree size diversity and height diversity for stand structure is not completely consistent. Stand diameter cannot reflect height information completely. Either tree size diversity or height diversity is one-dimensional information entropy measure. This paper discussed the method of multiple-dimensional information entropy measure with the concept of joint entropy. It is suggested that joint entropy is a good measure for describing overall stand structural diversity.
基金supported by the Scientific and Technological Research Council of Turkey(TBTAK)under the project no.114O015
文摘The structural diversity in urban forests is highly important to protect biodiversity. In particular, fruit trees and bush species, cavity-bearing trees and coarse, woody debris provide habitats for animals to feed, nest and hide. Improper silvicultural practices, intensive recreational use and illegal harvesting lead to a decline in the structural diversity in forests within larger metropolitan cities. It is important to monitor the structural diversity at definite time intervals using effective technologies with a view to instituting the necessary conservation measures. The use of satellite images seems to be appropriate to this end. Here we aimed to identify the associations between the textural features derived from the satellite images with different spatial resolutions and the structural diversity indices in urban forest stands (Shannon-Wiener index, complexity index, dominance index and density of wildlife trees). RapidEye images with a spatial resolution of 5 m × 5 m, ASTER images with a spatial resolution of 15 m × 15 m and Landsat-8 ETM satellite images with a spatial resolution of 30 m × 30 m were used in this study. The first-order (standard deviation of gray levels) and second order (GLCM entropy, GLCM contrast and GLCM correlation) textural features were calculated from the satellite images. When associations between textural features in the images and the structural diversity indices were assessed using the Pearson correlation coefficient, very high associations were found between the image textural features and the diversity indices. The highest association was found between the standard deviation of gray levels (SDGL<sub>RAP</sub>) derived from RVI<sub>RAP</sub> of RapidEye image and the Shannon-Wiener index (H <sub>h</sub>) calculated on the basis of tree height (R <sup>2</sup> = 0.64). The findings revealed that RapidEye satellite images with a spatial resolution of 5 m × 5 m are most suitable for estimating the structural diversity in urban forests.
基金supported by the National Natural Science Foundation of China(21503183)Yanan university field scientific research projects(YDBK2015-02)
文摘Four types of luminescent properties of metal-organic frameworks（MOFs） with formulas [Cd（1,2-BIYB）2（H2O）2]n·n（AQ-1,5-DAD）（1）, [Cd（AQ-1,5-DAD）（1,3-BIYB）2]n（2）, [Cd（1,3-BIYB）]n·n（AQ-1,5-DAD）·n H2O（3）, and [Zn（1,4-BIYB）2]n·n（AQ-1,5-DAD）2·6H2O（4）,（Na2AQ-1,5-DAD = anthraquinone-1,5-disulfonic acid disodium, 1,2-BIYB = 1,2-bis（imidazol-1-ylmethyl）benzene, 1,3-BIYB = 1,3-bis（imidazol-1-ylmethyl）benzene, 1,4-BIYB = 1,4-bis（imidazol-1-ylmethyl）benzene） have been synthesized based on a rare sulfonate and imidazole Co-ligand system under different conditions. The structural features of four types of MOFs 1-4 are as follows： MOFs 1 show a 3D supramolecular compound in which the double one-dimensional chains are further cross-linked by hydrogen bonds. 2 exhibits a 2D network constructed by two different 1D chains. 3 features a 2D supramolecular network, in which the 1D chains and AQ-1,5-DAD are arranged alternately through hydrogen bonds. 4 posseses a 3D supramolecular structure constructed by a 2D network and one-dimensional hydrogen bonding chains. All compounds 1-4 are characterized by elemental analysis, infrared spectroscopy, and thermogravimetric analysis. The luminescence properties of 1-4 have been investigated.
基金supported by the Postdoctoral Science Foundation of China(No.2014M562403)National Natural Science Foundation of China(No.21573189)
文摘Solvothermal reaction of manganese（II） salt with monosodium 2-sulfoterephthalate（2-NaH2stp） and two multi-pyridine N-containing auxiliary ligands results in the formation of two new complexes formulated with [Mn2（Hstp）2（bpp）2（H2O）4]（1） and [Mn3（stp）2（tpy）3（H2O）]（H2O）5（2）（bpp = benz-2,3-pyrimidine-[2,3-f]-1,10-phenanthroline, tpy = 2,2＇：6＇,2＇＇-terpyridine）. X-ray diffraction structural analyses of two complexes reveal their structural diversity（0D and 1D） due to the difference of auxiliary ligands. 1 is a discrete structure, in which the Mn（Ⅱ） ion is hexa-coordinated with one stp, one bpp ligand and two water molecules. Complex 2 is a one-dimensional（1D） chain-like structure with three crystallographically independent Mn（Ⅱ） ions. The photoluminescent properties could be assigned to the π-π＊ transition of 2-sulfoterephthalate ligands.
文摘The structural diversity of different tree-crop associations were studied at Gachabari Sal forest area of Madhupur Garh on Buffer and Peripheral Zone during 2006. The total density, basal area of trees in the Buffer and Peripheral Zone were 155.5 trees·hm^(-2), 795.4 trees·hm^(-2) and 3.9 m2·hm-2, 5.8 m^2·hm^(-2), respectively. No regeneration and natural trees were found in Peripheral Zone and the Zone is totally occupied by exotic species where the Buffer Zone comprised of both natural and exotic trees. The Peripheral Zone belonged to younger and smaller trees whereas the Buffer Zone belonged to mixture of smaller, taller, younger and mature trees simultaneously. For the practicing of different agroforestry systems both Zones have lost their original characters of Sal forest.
文摘The original version of this article unfortunately contained three mistakes. （1） The spelling of the [A. Nishad＇] name was incorrect. The corrected spelling is given below.
基金The authors would like to thank anonymous reviewers for their helpful comments and suggestions. This research was supported by the National Natural Science Foundation of China （Grant No. 61333014）.
文摘Decision trees are a kind of off-the-shelf predictive models, and they have been successfully used as the base learners in ensemble learning. To construct a strong classi- fier ensemble, the individual classifiers should be accurate and diverse. However, diversity measure remains a mystery although there were many attempts. We conjecture that a deficiency of previous diversity measures lies in the fact that they consider only behavioral diversity, i.e., how the classifiers behave when making predictions, neglecting the fact that classifiers may be potentially different even when they make the same predictions. Based on this recognition, in this paper, we advocate to consider structural diversity in addition to behavioral diversity, and propose the TMD （tree matching diversity） measure for decision trees. To investigate the usefulness of TMD, we empirically evaluate performances of selective ensemble approaches with decision forests by incorporating different diversity measures. Our results validate that by considering structural and behavioral diversities together, stronger ensembles can be constructed. This may raise a new direction to design better diversity measures and ensemble methods.
基金the National Education Project in Basic Science for Special Subjects(Insect Systematics)[grant No.J0630963]the National Science Foundation Project[Grant No.30970350]the National Science Foundation Project for Distinguished Young Scholars[Grant No.30725005].
文摘Ribosomal RNAs are important because they catalyze the synthesis of peptides and proteins.Comparative studies of the secondary structure of 18S rRNA have revealed the basic locations of its many length-conserved and lengthvariable regions.In recent years,many more sequences of 18S rDNA with unusual lengths have been documented in GenBank.These data make it possible to recognize the diversity of the secondary and tertiary structures of 18S rRNAs and to identify the length-conserved parts of 18S rDNAs.The longest 18S rDNA sequences of almost every known eukaryotic phylum were included in this study.We illustrated the bioinformatics-based structure to show that,the regions that are more length-variable,regions that are less length-variable,the splicing sites for introns,and the sites of A-minor interactions are mostly distributed in different parts of the 18S rRNA.Additionally,this study revealed that some length-variable regions or insertion positions could be quite close to the functional part of the 18S rRNA of Foraminifera organisms.The tertiary structure as well as the secondary structure of 18S rRNA can be more diverse than what was previously supposed.Besides revealing how this interesting gene evolves,it can help to remove ambiguity from the alignment of eukaryotic 18S rDNAs and to improve the performance of 18S rDNA in phylogenetic reconstruction.Six nucleotides shared by Archaea and Eukaryota but rarely by Bacteria are also reported here for the first time,which might further support the supposed origin of eukaryote from archaeans.
基金financially supported by National Natural Science Foundation of China(No.22161022).
文摘Chromones serve as versatile heterocyclic scaffolds and are common core structural units in a variety of natural products and bioactive organic molecules.This area of research,at the forefront of organic synthesis,has seen remarkable progress in recent years.Among the various synthetic methodologies for accessing chromone scaffolds,the tandem annulation of o-hydroxyaryl enaminones has emerged as a robust and practical strategy.This approach,through direct vinyl C-H bond functionalization of o-hydroxyaryl enaminones,enables the construction of structurally diverse chromones(including 3-substituted chromones,2-substituted chromones,and 2,3-disubstituted chromones)and their derivatives since mid-2019.In this review,we highlight recent advances in the synthesis of various types of chromones and their derivatives,achieved through tandem direct vinyl C-H activation and chromone annulation of o-hydroxyaryl enaminones.
文摘The present investigation aims at unveiling the main causes of the recorded disparate phylogeographic patterning among the two highly dispersive coastal crab species Carcinus aestuarii and Pachygrapsus marmoratus in the Mediterranean Sea.For this purpose,available mitochondrial and nuclear data for both species were re-analyzed and investigated for genetic polymorphism and differentiation patterns across three defined geographic scales in their distribution ranges,but also across the same locations in the Mediterranean Sea.The temporal frame of genetic diversification was also determined for both species in order to check whether observed differences in phylogeographic patterns among these coastal decapods could be attributed to different evolutionary histories.The obtained results revealed a more variable and diversified gene pool in the green crab C.aestuarii than the one recorded in the marbled crab P.marmoratus.Lack of significant correlation between pairwise genetic dissimilarities observed among C.aestuarii populations and those detected for P.marmoratus was notably discerned across the same defined Mediterranean locations.This finding indicates that the pattern of pairwise genetic differentiation does not vary in the same way in both examined crab species.Significant outputs of population genetic differentiation,retrieved within both species,were shown to be differently associated with the potential effects of various kinds of isolation processes(related to geography,environment and biogeographic boundary).Evolutionary history reconstruction showed older genetic diversification event in C.aestuarii than the one recorded in P.marmoratus.These recorded temporal frames suggest different modes of genetic diversification in both crab species(glacial vicariance for C.aestuarii and interglacial dispersal for P.marmoratus).They may also provide an explanation for the recorded differences in variation of patterns of population genetic diversity and structure,when integrated with species ecological requirements and life-history traits.
基金Project(2009QNA6015) supported by the Fundamental Research Funds for the Central Universities of ChinaProject(Y3110055)supported by the Natural Science Foundation of Zhejiang Province,ChinaProject(Y200803219) supported by the Foundation of Zhejiang Educational Committee of China
文摘The relationship between Solidago canadensis L. invasion and soil microbial community diversity including functional and structure diversities was studied across the invasive gradients varying from 0 to 40%, 80%, and 100% coverage of Solidago canadensis L. using sole carbon source utilization profiles analyses, principle component analysis （PCA） and phospholipid fatty acids （PLFA） profiles analyses. The results show the characteristics of soil microbial community functional and structure diversity in invaded soils strongly changed by Solidago canadensis L. invasion. Solidago canadensis L. invasion tended to result in higher substrate richness, and functional diversity. As compared to the native and ecotones, average utilization of specific substrate guilds of soil microbe was the highest in Solidago canadensis L. monoculture. Soil microbial functional diversity in Solidago canadensis L. monoculture was distinctly separated from the native area and the ecotones. Aerobic bacteria, fungi and actinomycetes population significantly increased but anaerobic bacteria decreased in the soil with Solidago canadensis L. monoculture. The ratio of cyl9：0 to 18：1 co7 gradually declined but mono/sat and fung/bact PLFAs increased when Solidago canadensis L. became more dominant. The microbial community composition clearly separated the native soil from the invaded soils by PCA analysis, especially 18： lco7c, 16： lco7t, 16： lco5c and 18：2co6, 9 were present in higher concentrations for exotic soil. In conclusion, Solidago canadensis L. invasion could create better soil conditions by improving soil microbial community structure and functional diversity, which in turn was more conducive to the growth ofSolidago canadensis L.
文摘This study aims to assess the impact of monospecific Tectona grandis forest plantation on the soil mite abundance and diversity. To achieve these objectives, two sites situated in Ivory Coast were investigated. The first, a primary forest was characterized by a very weak human activities whereas the second, a teak plantation was characterized by a high disturbance performed during the planting. After extracting, sorted and description, 116 mite species were described in the two sites. Mite densities were lower in teak plantation and also higher in the litter and decreased to the depth in both sites. Species richness re- corded in teak plantation （52 species） was significantly lower compared to primary forest （98 species）. The same trend was ob- served for Oribatida but not for Gamasida. The lower Oribatida （5 vs. 17） and higher Oribatida （24 vs. 41） were recorded respec- tively in teak plantation and primary forest. Mite Shannon index and evenness were significantly different between sites. High Jaccard index values and the appearance of exclusive species in both habitats showed that the sites are very distinct. Total number of species recorded corresponded to 58%-63% of the total number of species estimated by ACE and Chao 1＆2 estimators, indi- cating that the sampling effort was not sufficient. Mite abundance and diversity varied depending on the characteristics of habi- tats. Chemical element （Corn, Ctot, Ntot, and SOM） values were lower in teak plantation （disturbed habitat） and significantly dif- ferent to primary forest in the topsoil. Apart from litter height, soil depth, pH and C/N ratio, others variables were strongly corre- lated to mite abundance and diversity [Current Zoology 59 （5）： 633-643, 2013].
基金supported by DBT Network Project (BT/PR7928/NDB/52/9/2006)Department of Biotechnology(DBT),Govt. of India
文摘Tree species diversity and population structure at different community types were described and analyzed for primary and secondary lowland moist deciduous forests in Tripura. Overall 10,957 individual trees belonging to 46 family, 103 genera and 144 species were counted at ≥30 cm DBH （diameter at breast height） using 28 permanent belt transects with a size of 1 ha （10 m × 1000 m）. Four different tree communities were identified. The primary forests was dominated by Shorea robusta （mean density 464.77 trees.ha^-1, 105 species） and Schima wallichii （336.25 trees.ha^-1, 82 species）, while the secondary forests was dominated by Tectona grandis （333.88 trees.ha^-1, 105 species） and Hevea brasiliensis （299.67 trees.ha^-1, 82 species）. Overall mean basal area in this study was 18.01m2.ha^-1; the maximum value was recorded in primary Shorea forest （26.21 m2.ha^-1）. Mean density and diversity indices were differed significantly within four different communities. No significant differences were observed in number of species, genera, family and tree basal cover area. Significant relationships were found between the species richness and different tree population groups across the communities. Results revealed that species diversity and density were increased in those forests due to past disturbances which resulted in slow accumu- lation of native oligarchic small tree species. Seventeen species were recorded with 〈2 individuals of which Saraca asoka （Roxb.） de Wilde and Entada phaseoloides （L.） Men＇. etc. extensively used in local ethnomedicinal formulations. The present S. robusta Gaertn dominated forest was recorded richer （105 species） than other reported studies. Moraceae was found more speciose family instead of Papilionaceae and Euphorbiaceae than other Indian moist deciduous forests. Seasonal phenological gap in such moist deciduous forests influenced the population of Trachypithecus pileatus and capped langur. The analysis of FIV suggested a slow trend of shifting the population of Lamiaceae group by Moraceae species in secondary T. grandis L. dominated community.
基金supported by grants from the National Natural Science Foundation of China (Nos 41271338, 41303066)the Special Environmental Protection Foundation for Public Welfare Projects (No. 201009032)+1 种基金the National Science Foundation for Post-doctoral Scientists of China (No. 2013M530685)the State Key Laboratory Program (No. SKLECRA2013OFP03)
文摘Arbuscular mycorrhizal fungi （AMF） have great potential for assisting heavy metal hyperaccumulators in the remediation of contaminated soils. However, little information is available about the community composition of AMF under natural conditions in soils contaminated by antimony （Sb）. The objective of this study was to investigate the characteristics of AMF molecular diversity, and to explore the effects of Sb content and soil properties on the AMF community structure in an Sb mining area. Four Sb mine spoils and one adjacent reference area were selected from around the Xikuangshan mine in southern China. The association of AMF molecular diversity and community composition with the rhizosphere soils of the dominant plant species was studied by Polymerase Chain Reaction-Denaturing Gradient Gel Electrophoresis （PCR-DGGE）. Results from all five studied sites showed that the diversity of AMF decreased with increasing Sb concentration. Principal component analysis （PC_A） indicated that the AMF community structure was markedly different among these groups. Further redundancy analysis （RDA） showed that Sb contamination was the dominating factor influencing the AMF community structure in the Sb mine area. However, the multivariate analysis showed that, apart from the soil Sb content, extractable nitrogen content and organic matter content also attributed to AMF sequence distribution type. Some AMF sequences were only found in the highly contaminated area and these might be ideal candidates for improving phytoremediation efficiency in Sb mining regions. Gene sequencing analysis revealed that most species were affiliated with Gloraus, suggesting that Glomus was the dominant AMF genus in the studied Sb mining area.
基金supported by the National Key Technology Research and Development Program of China(2011BAZ01732)the Project of the Ministry of Agriculture of China(CARS-25)+2 种基金the Core Research Budget of the Non-profit Governmental Research Institute,China(ICS,CAAS1610032011011)the Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences(CAAS-ASTIP-IVFCAAS)
文摘Pepper（Capsicum spp.） is an important vegetable crop in the world. Now the pepper in China contributes one-third of the world＇s peppers production. Genetic diversity of the pepper germplasm of China is expected interesting to know. To explore the structure of genetic diversity in Chinese pepper germplasm resources and possible relationship with cultivar types or geographic origin, we sampled and compared 372 Gen Bank pepper accessions（local cultivars and landraces） from 31 provinces, autonomous regions and municipalities of China and 31 additional accessions from other countries. These accessions were genotyped using 28 simple sequence repeat（SSR） markers spanning the entire pepper genome. We then investigated the genetic structure of the sampled collection using model-based analysis in STRUCTURE v2.3.4 and examined genetic relationships by the unweighted pair-group method of mathematical averages（UPGMA） in MEGA. In addition to geographic origin, we evaluated eight plant and fruit traits. In total, 363 alleles were amplified using the 28 SSR primers. Gene diversity, polymorphism information content and heterozygosity of the 28 SSR loci were estimated as 0.09–0.92, 0.08–0.92 and 0.01–0.34, respectively. The UPGMA cluster analysis clearly distinguished Capsicum annuum L. from other cultivated pepper species. Population structure analysis of the 368 C. annuum accessions uncovered three genetic groups which also corresponded to distinct cultivar types with respect to the plant and fruit descriptors. The genetic structure was also related to the geographic origin of the landraces. Overall results indicate that genetic diversity of Chinese pepper landraces were structured by migration of genotypes followed by human selection for cultivar types in agreement with consumption modes and adaptation to the highly diversified agro-climatic conditions.
基金Key Laboratory of Southwest China Wildlife Resources Conservation(Ministry of Education),China West Normal University(XNYB18-02)Nature Conservation of Snake Island and Laotieshan Mountain,Dalian,China(Y8Y3041).
文摘Island species and their ecosystems play an important role in global biodiversity preservation,and many vulnerable island species are conservation priorities.Although insular habitat likely facilitates the species diversification process,it may also aggravate the fragility of these species with high risk of inbreeding.The Shedao pit-viper Gloydius shedaoensis is an island endemic species with an extremely high population density,which has been categorized as vulnerable in the IUCN(International Union for the Conservation of Nature and Natural Resources)Red List.We collected 13,148 SNP(Single Nucleotide Polymorphism)from across its genome and examined its genetic diversity and demographic history.The Shedao pit-viper has a low genetic diversity but shows no sign of inbreeding.Furthermore,population genetic structure analysis,including the neighbor-joining tree,principal coordinate analysis,clustering,and spatial autocorrelation,revealed a general lack of spatial structure.Only the isolation by distance residues suggested a weak patchiness.Overall,the population is nearly panmictic and gene flow is evenly distributed across the island.A large number of individuals,small size of the island,and the lack of population structure likely all contribute to the lack of inbreeding in this species.We also detected signs of male-biased dispersal,which likely is another inbreeding avoidance strategy.Historical demographic analysis suggested that the historical population size and distribution of the species are much larger than their current ones.The multiple transgressive–regressive events since the Late Pleistocene are likely the main cause of the population size changes.Taken together,our results provide a basic scientific foundation for the conservation of this interesting and important species.
文摘A set of 50 rice genotypes comprising landraces, local selections, and improved varieties were characterized using simple sequence repeat（SSR） and inter simple sequence repeat（ISSR） markers to study genetic diversity and population structure. Following unweighted pair group method with arithmetic mean based clustering using binary data of polymorphic markers, the genotypes were grouped into 5 clusters and 11 sub-clusters, whereas population structure analysis separated 50 rice genotypes into 5 sub-populations. Grouping of rice genotypes showed better resemblance with the pedigree information of the genotypes. Both genetic diversity and population structure analysis separated majority of the improved varieties from landraces and local selections. Some of the SSR markers amplified unique alleles which were specific to a particular genotype and could distinguish them from the rest. The results indicate that these rice genotypes exhibit a higher genetic diversity and can be very useful in rice improvement program.
