芝麻是八大类食物过敏原之一,快速准确识别芝麻过敏原对预防其过敏有重要意义。核酸适配体可以高效识别靶标过敏原,在过敏原检测中有良好的应用前景。为了获得芝麻主要过敏原Ses i 2的特异性核酸适体,本研究以Ses i 2为靶标,通过磁珠筛...芝麻是八大类食物过敏原之一,快速准确识别芝麻过敏原对预防其过敏有重要意义。核酸适配体可以高效识别靶标过敏原,在过敏原检测中有良好的应用前景。为了获得芝麻主要过敏原Ses i 2的特异性核酸适体,本研究以Ses i 2为靶标,通过磁珠筛选法(磁珠-SELEX)开展10轮筛选,经由高通量测序获得6条候补序列(S1~S6),并进行家族性、同源性分析及二级结构预测。结果表明,6条候选核酸适体的重复率可达46.38%,其自由能在-9.02到-2.47 kcal·moL^(-1)之间,根据自由能能量稳定原则,S1和S5吉布斯自由能最低最稳定,分别为-6.70和-9.02 kcal·moL^(-1)。利用ELISA试验进行亲和力测试,结果表明核酸适体S1和S2的亲和能力较强,S1:KD=67.02 nmol·L^(-1),R2=0.925 8,S2:KD=97.65 nmol·L^(-1),R2=0.795 1。核酸适体S1与过敏原Ses i 2的结合力和其他过敏原蛋白相比有显著差异,可视为具有特异性。本研究最终获得一条兼具良好亲和力和特异性的核酸适体S1,为芝麻过敏原快速检测提供了技术支撑。展开更多
Sesame is one of the eight major allergens that cause food allergies.Study of the epitopes of sesame allergens is important for understanding their sensitization mechanisms.Currently,less information is available on t...Sesame is one of the eight major allergens that cause food allergies.Study of the epitopes of sesame allergens is important for understanding their sensitization mechanisms.Currently,less information is available on the epitope studies of sesame allergens.In this study,we analyzed the molecular characteristics,structure and homology of Ses i 3,one of the important sesame allergens.We predicted the B-cell linear epitopes of Ses i 3 using bioinformatics tools and characterized them by slot blot immuno-microarrays technology.Eight peptides as B-cell linear epitopes of Ses i 3 were identified,in addition,key amino acids in these epitopes were predicted and leucine 422 was identified as a key amino acid.The present work will contribute to further understanding of the sesame allergen and provide some help in the prevention and treatment of sesame allergy.展开更多
Shrimp farming is a major global aquaculture activity;however,its social and ecological impacts raise sustainability concerns.While previous research has focused on isolated social or environmental aspects of sustaina...Shrimp farming is a major global aquaculture activity;however,its social and ecological impacts raise sustainability concerns.While previous research has focused on isolated social or environmental aspects of sustainability in shrimp farming,integrated assessments of these factors using a social-ecological systems(SES)approach are rare.A framework for assessing the sustainability of shrimp farming-comprising a set of social and ecological indicators-is developed and conceptualized in this study for the first time,using an integrated,interdisciplinary,and empirical SES approach.We first identified key social and ecological indicators and developed a conceptual framework based on SES approach,then surveyed 90 shrimp farms across 3 coastal regions(including Satkhira,Bagerhat,and Cox’s Bazar districts)in Bangladesh.Nearly all farmers in Satkhira(97%)and all in Bagerhat(100%)expressed dissatisfaction with the decreasing pattern of shrimp production and profitability over the last decade.In contrast,nearly all respondents in Cox’s Bazar(97%)reported satisfaction with increasing shrimp production.Except in Cox’s Bazar,equity in labor payment remained a concern for the social sustainability of the shrimp farming system.The changing pattern of shrimp production and profitability,which does not ensure equity,poses a threat to the sustainability of shrimp farming.Most of the surveyed farmers recognized the mutual benefits of mangrove forests and shrimp farming(97%in Satkhira and 77%in Cox’s Bazar),which suggests potential for the development of policy on integrated mangrove-shrimp farming with community-based management.This research could help assess the sustainability of the shrimp farming system and contribute to achieving Sustainable Development Goals 2(zero hunger)and 8(decent work and economic growth).By examining existing practices and developing a novel framework,this study highlights informed decision-making and guides methodological discussion on assessing the sustainability of shrimp farming using the SES approach in coastal regions and different aquaculture systems worldwide.展开更多
Background:Limited data are available for sirolimus-eluting stent(SES,Cypher)implantation in patients with coronary artery disease in small vessels.The clinical longtermoutcomes of SES in patients with coronary artery...Background:Limited data are available for sirolimus-eluting stent(SES,Cypher)implantation in patients with coronary artery disease in small vessels.The clinical longtermoutcomes of SES in patients with coronary artery disease after intracoronary stenting in small vessels has not been yet evaluated.展开更多
为预测芝麻过敏原Ses i 3的B细胞线性抗原表位和三级结构,使用SOPMA、DNAStar和The BepiPred1.0 Server等生物信息学软件,采用多种方案对Ses i 3抗原性指数、亲水性、表面可及性、柔韧性等参数及其二级结构进行预测,对预测抗原表位综合...为预测芝麻过敏原Ses i 3的B细胞线性抗原表位和三级结构,使用SOPMA、DNAStar和The BepiPred1.0 Server等生物信息学软件,采用多种方案对Ses i 3抗原性指数、亲水性、表面可及性、柔韧性等参数及其二级结构进行预测,对预测抗原表位综合分析。利用SWISS-MODEL程序进行同源建模并用Ramachandran软件评价结构稳定性。结果:序列SESKDP,RQKHQGEHG,NRKSP,QHG,YQREKGRQDDDNPTDPEKQY,RRQG,KYREQQGREGGRGE,EGR,EQGR,QHG,RQDR,ENP,RHE,ESK,RPTH,ASQ,SRSRGSYQGETRGRP,ANNNE,SRSQQ,GPRQQQQGR最可能是Ses i 3蛋白的B细胞线性抗原表位。以5e1r.2为模板,同源建模的方式成功构建了芝麻过敏原Ses i 3蛋白的三级结构,并经Ramachandran评价显示蛋白模型构象稳定。此结果为制备特异性抗体肽段及过敏原检测等提供了依据。展开更多
文摘芝麻是八大类食物过敏原之一,快速准确识别芝麻过敏原对预防其过敏有重要意义。核酸适配体可以高效识别靶标过敏原,在过敏原检测中有良好的应用前景。为了获得芝麻主要过敏原Ses i 2的特异性核酸适体,本研究以Ses i 2为靶标,通过磁珠筛选法(磁珠-SELEX)开展10轮筛选,经由高通量测序获得6条候补序列(S1~S6),并进行家族性、同源性分析及二级结构预测。结果表明,6条候选核酸适体的重复率可达46.38%,其自由能在-9.02到-2.47 kcal·moL^(-1)之间,根据自由能能量稳定原则,S1和S5吉布斯自由能最低最稳定,分别为-6.70和-9.02 kcal·moL^(-1)。利用ELISA试验进行亲和力测试,结果表明核酸适体S1和S2的亲和能力较强,S1:KD=67.02 nmol·L^(-1),R2=0.925 8,S2:KD=97.65 nmol·L^(-1),R2=0.795 1。核酸适体S1与过敏原Ses i 2的结合力和其他过敏原蛋白相比有显著差异,可视为具有特异性。本研究最终获得一条兼具良好亲和力和特异性的核酸适体S1,为芝麻过敏原快速检测提供了技术支撑。
基金supported by the Fundamental Research Funds for the Public Research Institutes of Chinese Academy of Inspection and Quarantine(2022JK04).
文摘Sesame is one of the eight major allergens that cause food allergies.Study of the epitopes of sesame allergens is important for understanding their sensitization mechanisms.Currently,less information is available on the epitope studies of sesame allergens.In this study,we analyzed the molecular characteristics,structure and homology of Ses i 3,one of the important sesame allergens.We predicted the B-cell linear epitopes of Ses i 3 using bioinformatics tools and characterized them by slot blot immuno-microarrays technology.Eight peptides as B-cell linear epitopes of Ses i 3 were identified,in addition,key amino acids in these epitopes were predicted and leucine 422 was identified as a key amino acid.The present work will contribute to further understanding of the sesame allergen and provide some help in the prevention and treatment of sesame allergy.
基金Prime Minister Fellowship, Government of the People’s Republic of Bangladesh, for providing a PhD fellowship to Kazi Atiah TAIYEBIGraduate Research and Travel Awards (GRATA) under the School of Social&Environmental Sustainability, University of Glasgow, for supporting the field work in Bangladesh。
文摘Shrimp farming is a major global aquaculture activity;however,its social and ecological impacts raise sustainability concerns.While previous research has focused on isolated social or environmental aspects of sustainability in shrimp farming,integrated assessments of these factors using a social-ecological systems(SES)approach are rare.A framework for assessing the sustainability of shrimp farming-comprising a set of social and ecological indicators-is developed and conceptualized in this study for the first time,using an integrated,interdisciplinary,and empirical SES approach.We first identified key social and ecological indicators and developed a conceptual framework based on SES approach,then surveyed 90 shrimp farms across 3 coastal regions(including Satkhira,Bagerhat,and Cox’s Bazar districts)in Bangladesh.Nearly all farmers in Satkhira(97%)and all in Bagerhat(100%)expressed dissatisfaction with the decreasing pattern of shrimp production and profitability over the last decade.In contrast,nearly all respondents in Cox’s Bazar(97%)reported satisfaction with increasing shrimp production.Except in Cox’s Bazar,equity in labor payment remained a concern for the social sustainability of the shrimp farming system.The changing pattern of shrimp production and profitability,which does not ensure equity,poses a threat to the sustainability of shrimp farming.Most of the surveyed farmers recognized the mutual benefits of mangrove forests and shrimp farming(97%in Satkhira and 77%in Cox’s Bazar),which suggests potential for the development of policy on integrated mangrove-shrimp farming with community-based management.This research could help assess the sustainability of the shrimp farming system and contribute to achieving Sustainable Development Goals 2(zero hunger)and 8(decent work and economic growth).By examining existing practices and developing a novel framework,this study highlights informed decision-making and guides methodological discussion on assessing the sustainability of shrimp farming using the SES approach in coastal regions and different aquaculture systems worldwide.
文摘Background:Limited data are available for sirolimus-eluting stent(SES,Cypher)implantation in patients with coronary artery disease in small vessels.The clinical longtermoutcomes of SES in patients with coronary artery disease after intracoronary stenting in small vessels has not been yet evaluated.
文摘为预测芝麻过敏原Ses i 3的B细胞线性抗原表位和三级结构,使用SOPMA、DNAStar和The BepiPred1.0 Server等生物信息学软件,采用多种方案对Ses i 3抗原性指数、亲水性、表面可及性、柔韧性等参数及其二级结构进行预测,对预测抗原表位综合分析。利用SWISS-MODEL程序进行同源建模并用Ramachandran软件评价结构稳定性。结果:序列SESKDP,RQKHQGEHG,NRKSP,QHG,YQREKGRQDDDNPTDPEKQY,RRQG,KYREQQGREGGRGE,EGR,EQGR,QHG,RQDR,ENP,RHE,ESK,RPTH,ASQ,SRSRGSYQGETRGRP,ANNNE,SRSQQ,GPRQQQQGR最可能是Ses i 3蛋白的B细胞线性抗原表位。以5e1r.2为模板,同源建模的方式成功构建了芝麻过敏原Ses i 3蛋白的三级结构,并经Ramachandran评价显示蛋白模型构象稳定。此结果为制备特异性抗体肽段及过敏原检测等提供了依据。
