目的:构建中草药来源的目标微小RNA(microRNA,miR)在小鼠肺组织中的靶基因谱检测方法,利用该方法检测清肺排毒汤所含miR-320—靶基因谱及其生物学功能,为清肺排毒汤治疗病毒性肺炎的分子机制补充miR维度的数据支撑。方法:采用二代高通...目的:构建中草药来源的目标微小RNA(microRNA,miR)在小鼠肺组织中的靶基因谱检测方法,利用该方法检测清肺排毒汤所含miR-320—靶基因谱及其生物学功能,为清肺排毒汤治疗病毒性肺炎的分子机制补充miR维度的数据支撑。方法:采用二代高通量测序测定目标miR(miR-320)在清肺排毒汤中的表达情况,利用“结合态miR—靶基因抓取测序技术(capturing and sequencing of miRNA-target complex technology,CSCT)”初步检测其在小鼠肺组织中的靶基因谱,并采用Alphafold3验证检测结果,取其交集作为目标miR的靶基因谱;进而分析靶基因谱的功能,阐释清肺排毒汤通过miR-320在小鼠肺组织中的调控功能;此外,将检测结果与TargetScan的预测结果进行比对,验证本检测方法(CSCT+Alphafold3序贯检测法)的优势。结果:高通量测序结果表明清肺排毒汤中富含miR-320,其表达含量居前50位。miR-320在小鼠肺组织中可作用于26类靶基因,其中19类为已知基因(18类为mRNA以及1类为转录增强子),其主要通过miR经典作用模式识别靶基因,与26类靶基因具有良好的碱基互补性,最小自由能在-35.8~-21.8 kcal·mol^(-1)之间;Alphafold3预测的靶基因的iPTM和PTM之和最小值为1.1,位于高置信度区域,100%验证了CSCT的检测结果,据此确证26类靶基因为miR-320作用谱;与TargetScan相比,本研究构建的“CSCT+Alphafold3序贯检测法”对于靶基因谱的检测准确率更高。这些靶基因具有多种功能,主要富集于白介素介导的免疫信号通路,在抗原处理与提呈、免疫因子或细胞介导的细胞凋亡、淋巴细胞增殖与活化等生物学过程中发挥作用。结论:清肺排毒汤所含miR-320在小鼠肺组织内主要富集于免疫调节相关通路,这可能是清肺排毒汤治疗病毒性肺炎的miR分子机制之一;本研究构建的“CSCT+Alphafold3”法对于miR靶基因谱的检测具有较高的可靠性和准确性,可作为中药汤剂中miR—靶基因互作谱检测技术。展开更多
Drought stress is a serious natural challenge for tea plants that significantly affects tea yield and quality.miR171s play critical roles in plant stress responses,however,their role in drought stress tolerance in tea...Drought stress is a serious natural challenge for tea plants that significantly affects tea yield and quality.miR171s play critical roles in plant stress responses,however,their role in drought stress tolerance in tea plants(Camellia sinensis)is poorly understood.This study experimentally verified the expression patterns of csn-miR171b-3p_2 and its target,scarecrow-like(SCL).We found that csn-miR171b-3p_2 could target and regulate CsSCL6-4 to play an important role in the defense against drought stress in tea plants.CsSCL6-4 is located in the nucleus and is selfactivated in vivo.In addition,we obtained 819 putative binding regions of CsSCL6-4 using DNA affinity purification sequencing analysis,which were assigned to 786 different genes,four of which were drought-resistant genes(CsPrx,CsSDR,CsFAD7,and CsCER1).Yeast one-hybrid and dual-luciferase reporter assays revealed that CsSCL6-4 directly promoted the expression of these four drought resistance genes by binding motifs 1/2/3 in their promoter regions.Both overexpression and suppression of CsSCL6-4 proved that CsSCL6-4 participated in the defense against drought stress in tea plants by regulating the expression of CsPrx,CsSDR,CsFAD7,and CsCER1.In addition,suppression of csn-miR171b-3p_2 expression significantly increased the expression of CsSCL6-4 and activated CsSCL6-4-bound gene transcription under drought stress.Therefore,the csn-miR171b-3p_2-CsSCL6-4 module participates in tea plant resistance to drought stress by promoting the expression of drought resistance genes.Our results revealed the function of csn-miR171b-3p_2 in tea plants and provided new insights into the mechanism of tea plant resistance to drought stress.展开更多
背景:目前发现miR-196b-5p在细胞增殖、迁移及抑制瘢痕增生中发挥作用,但在创面愈合过程中是否发挥作用缺乏相关研究。目的:探讨脂肪干细胞源性外泌体中miR-196b-5p对烧伤创面愈合的影响。方法:构建SD大鼠皮肤深Ⅱ度烧伤模型,随机分为4...背景:目前发现miR-196b-5p在细胞增殖、迁移及抑制瘢痕增生中发挥作用,但在创面愈合过程中是否发挥作用缺乏相关研究。目的:探讨脂肪干细胞源性外泌体中miR-196b-5p对烧伤创面愈合的影响。方法:构建SD大鼠皮肤深Ⅱ度烧伤模型,随机分为4组:空白对照组、外泌体组、agomiR-196b-5p组和外泌体+antagomiR-196b-5p组,每组10只,根据不同分组于创周注射PBS、脂肪干细胞源性外泌体、miR-196b-5p激动剂和miR-196b-5p抑制剂,伤后即刻和伤后7,14,21 d观察创面愈合情况,伤后7 d苏木精-伊红染色观察创面炎症表达,伤后14 d Masson染色观察创面胶原表达及免疫组化染色观察创面CD31表达,伤后7 d Western blot检测创面中α-平滑肌肌动蛋白、Ⅰ型胶原蛋白表达。结果与结论:①agomiR-196b-5p组创面愈合较快,空白对照组和外泌体+antagomiR-196b-5p组愈合较慢;②与空白对照组和外泌体+antagomiR-196b-5p组相比,外泌体组和agomiR-196b-5p组创面炎性细胞浸润较少,CD31表达明显增加(P<0.01);③与空白对照组和外泌体+antagomiR-196b-5p组相比,外泌体组和agomiR-196b-5p组中α-平滑肌肌动蛋白、Ⅰ型胶原蛋白表达升高(P<0.05)。结果表明,脂肪干细胞源性外泌体中miR-196b-5p能促进大鼠烧伤创面愈合。展开更多
文摘目的:构建中草药来源的目标微小RNA(microRNA,miR)在小鼠肺组织中的靶基因谱检测方法,利用该方法检测清肺排毒汤所含miR-320—靶基因谱及其生物学功能,为清肺排毒汤治疗病毒性肺炎的分子机制补充miR维度的数据支撑。方法:采用二代高通量测序测定目标miR(miR-320)在清肺排毒汤中的表达情况,利用“结合态miR—靶基因抓取测序技术(capturing and sequencing of miRNA-target complex technology,CSCT)”初步检测其在小鼠肺组织中的靶基因谱,并采用Alphafold3验证检测结果,取其交集作为目标miR的靶基因谱;进而分析靶基因谱的功能,阐释清肺排毒汤通过miR-320在小鼠肺组织中的调控功能;此外,将检测结果与TargetScan的预测结果进行比对,验证本检测方法(CSCT+Alphafold3序贯检测法)的优势。结果:高通量测序结果表明清肺排毒汤中富含miR-320,其表达含量居前50位。miR-320在小鼠肺组织中可作用于26类靶基因,其中19类为已知基因(18类为mRNA以及1类为转录增强子),其主要通过miR经典作用模式识别靶基因,与26类靶基因具有良好的碱基互补性,最小自由能在-35.8~-21.8 kcal·mol^(-1)之间;Alphafold3预测的靶基因的iPTM和PTM之和最小值为1.1,位于高置信度区域,100%验证了CSCT的检测结果,据此确证26类靶基因为miR-320作用谱;与TargetScan相比,本研究构建的“CSCT+Alphafold3序贯检测法”对于靶基因谱的检测准确率更高。这些靶基因具有多种功能,主要富集于白介素介导的免疫信号通路,在抗原处理与提呈、免疫因子或细胞介导的细胞凋亡、淋巴细胞增殖与活化等生物学过程中发挥作用。结论:清肺排毒汤所含miR-320在小鼠肺组织内主要富集于免疫调节相关通路,这可能是清肺排毒汤治疗病毒性肺炎的miR分子机制之一;本研究构建的“CSCT+Alphafold3”法对于miR靶基因谱的检测具有较高的可靠性和准确性,可作为中药汤剂中miR—靶基因互作谱检测技术。
基金supported by the Rural Revitalization Tea Industry Technical Service Project of Fujian Agriculture and Forestry University(Grant No.11899170145)the“Double firstclass”scientific and technological innovation capacity and enhancement cultivation plan of Fujian Agriculture and Forestry University(Grant No.KSYLP004)+4 种基金6.18 Tea Industry Technology Branch of Collaborative Innovation Institute(Grant No.K1520001A)Fujian Agriculture and Forestry University Construction Project for Technological Innovation and Service System of Tea Industry Chain(Grant No.K1520005A01)Tea Industry Branch of Collaborative Innovation Institute of Fujian Agriculture and Forestry University(Grant No.K1521015A)Science and Technology Innovation Special Fund Project of Fujian Agriculture and Forestry University(Grant No.KFb22020XA)the Special Fund for Science and Technology Innovation of Fujian Zhang Tianfu Tea Development Foundation(Grant No.FJZTF01).
文摘Drought stress is a serious natural challenge for tea plants that significantly affects tea yield and quality.miR171s play critical roles in plant stress responses,however,their role in drought stress tolerance in tea plants(Camellia sinensis)is poorly understood.This study experimentally verified the expression patterns of csn-miR171b-3p_2 and its target,scarecrow-like(SCL).We found that csn-miR171b-3p_2 could target and regulate CsSCL6-4 to play an important role in the defense against drought stress in tea plants.CsSCL6-4 is located in the nucleus and is selfactivated in vivo.In addition,we obtained 819 putative binding regions of CsSCL6-4 using DNA affinity purification sequencing analysis,which were assigned to 786 different genes,four of which were drought-resistant genes(CsPrx,CsSDR,CsFAD7,and CsCER1).Yeast one-hybrid and dual-luciferase reporter assays revealed that CsSCL6-4 directly promoted the expression of these four drought resistance genes by binding motifs 1/2/3 in their promoter regions.Both overexpression and suppression of CsSCL6-4 proved that CsSCL6-4 participated in the defense against drought stress in tea plants by regulating the expression of CsPrx,CsSDR,CsFAD7,and CsCER1.In addition,suppression of csn-miR171b-3p_2 expression significantly increased the expression of CsSCL6-4 and activated CsSCL6-4-bound gene transcription under drought stress.Therefore,the csn-miR171b-3p_2-CsSCL6-4 module participates in tea plant resistance to drought stress by promoting the expression of drought resistance genes.Our results revealed the function of csn-miR171b-3p_2 in tea plants and provided new insights into the mechanism of tea plant resistance to drought stress.
文摘背景:目前发现miR-196b-5p在细胞增殖、迁移及抑制瘢痕增生中发挥作用,但在创面愈合过程中是否发挥作用缺乏相关研究。目的:探讨脂肪干细胞源性外泌体中miR-196b-5p对烧伤创面愈合的影响。方法:构建SD大鼠皮肤深Ⅱ度烧伤模型,随机分为4组:空白对照组、外泌体组、agomiR-196b-5p组和外泌体+antagomiR-196b-5p组,每组10只,根据不同分组于创周注射PBS、脂肪干细胞源性外泌体、miR-196b-5p激动剂和miR-196b-5p抑制剂,伤后即刻和伤后7,14,21 d观察创面愈合情况,伤后7 d苏木精-伊红染色观察创面炎症表达,伤后14 d Masson染色观察创面胶原表达及免疫组化染色观察创面CD31表达,伤后7 d Western blot检测创面中α-平滑肌肌动蛋白、Ⅰ型胶原蛋白表达。结果与结论:①agomiR-196b-5p组创面愈合较快,空白对照组和外泌体+antagomiR-196b-5p组愈合较慢;②与空白对照组和外泌体+antagomiR-196b-5p组相比,外泌体组和agomiR-196b-5p组创面炎性细胞浸润较少,CD31表达明显增加(P<0.01);③与空白对照组和外泌体+antagomiR-196b-5p组相比,外泌体组和agomiR-196b-5p组中α-平滑肌肌动蛋白、Ⅰ型胶原蛋白表达升高(P<0.05)。结果表明,脂肪干细胞源性外泌体中miR-196b-5p能促进大鼠烧伤创面愈合。
