Based on the ideas of controlling relative quality and rearranging bitplanes, a new ROI coding method for JPEG2000 was proposed, which shifts and rearranges bitplanes in units of bitplane groups. It can code arbitrary...Based on the ideas of controlling relative quality and rearranging bitplanes, a new ROI coding method for JPEG2000 was proposed, which shifts and rearranges bitplanes in units of bitplane groups. It can code arbitrary shaped ROI without shape coding, and reserve almost arbitrary percent of background information. It also can control the relative quality of progressive decoded images. In addition, it is easy to be implemented and has low computational cost.展开更多
In the present work, the class of metrics connected with subsets of the linear space on the field, GF(2), is considered and a number of facts are established, which allow us to express the correcting capacity of codes...In the present work, the class of metrics connected with subsets of the linear space on the field, GF(2), is considered and a number of facts are established, which allow us to express the correcting capacity of codes for the additive channel in terms of this metrics. It is also considered a partition of the metric space, Bn, by means of D-representable codes. The equivalence of D-representable and the perfect codes in the additive channel is proved.展开更多
[Objective] To discuss the effects of major mapping methods for DNA sequence on the accuracy of protein coding regions prediction,and to find out the effective mapping methods.[Method] By taking Approximate Correlatio...[Objective] To discuss the effects of major mapping methods for DNA sequence on the accuracy of protein coding regions prediction,and to find out the effective mapping methods.[Method] By taking Approximate Correlation（AC） as the full measure of the prediction accuracy at nucleotide level,the windowed narrow pass-band filter（WNPBF） based prediction algorithm was applied to study the effects of different mapping methods on prediction accuracy.[Result] In DNA data sets ALLSEQ and HMR195,the Voss and Z-Curve methods are proved to be more effective mapping methods than paired numeric（PN）,Electron-ion Interaction Potential（EIIP） and complex number methods.[Conclusion] This study lays the foundation to verify the effectiveness of new mapping methods by using the predicted AC value,and it is meaningful to reveal DNA structure by using bioinformatics methods.展开更多
目的基于二代测序平台评估法医常见体液样本的编码区单核苷酸多态性(coding region single nucleotide polymorphism,cSNP)在DNA和RNA水平分型一致性。方法经大量文献检索,选取外周血、精液和阴道分泌液中的8个体液特异性mRNA分子上的25...目的基于二代测序平台评估法医常见体液样本的编码区单核苷酸多态性(coding region single nucleotide polymorphism,cSNP)在DNA和RNA水平分型一致性。方法经大量文献检索,选取外周血、精液和阴道分泌液中的8个体液特异性mRNA分子上的25个c SNP位点,基于MiSeq FGx测序平台,分别构建DNA水平的c SNP位点复合检验体系和RNA水平的cSNP位点复合检验体系,共使用45份体液样本(包括14份外周血,15份精液,16份阴道分泌液)进行测序并分析各cSNP位点的分型结果,利用Sanger测序技术对在DNA和RNA水平分型结果不一致的位点进行复核。结果外周血特异的标记在DNA和RNA水平的cSNP分型结果完全一致。在15个精液样本中,精液特异标记TGM4基因上rs1995640、rs1995641均有3例分型不一致。在16个阴道分泌液样本中,阴道分泌液特异性标记MUC22基因上rs3869098、rs10947121、rs12110470分别出现2例、1例、2例检验结果不一致的情况。结论本研究基于MiSeq FGx测序平台结合Sanger测序技术检验的25个具有体液组织特异性的cSNP位点中,共有20个位点在DNA和RNA水平分型结果一致,TGM4和MUC22基因上共5个位点在相应体液个别样本的DNA和RNA水平上有差异,本研究为cSNP在法医实战应用中评估其在DNA与RNA水平的分型一致性提供数据基础和方法参考。展开更多
A new way of indexing and processing twig patterns in an XML documents is proposed in this paper. Every path in XML document can be transformed into a sequence of labels by Structure-Encoded that constructs a one-to-o...A new way of indexing and processing twig patterns in an XML documents is proposed in this paper. Every path in XML document can be transformed into a sequence of labels by Structure-Encoded that constructs a one-to-one correspondence between XML tree and sequence. Base on identifying characteristics of nodes in XML tree, the elements are classified and clustered. During query proceeding, the twig pattern is also transformed into its Structure-Encoded. By performing subsequence matching on the set of sequences in XML documents, all the occurrences of path in the XML documents are refined. Using the index, the numbers of elements retrieved are minimized. The search results with pertinent format provide more structure information without any false dismissals or false alarms. The index also supports keyword search Experiment results indicate the index has significantly efficiency with high precision.展开更多
Mitochondrial DNA sequences of the entire control region and three coding regions were analyzed in 108 unrelated individuals from three regions of Bangladesh. Sequence evaluation was performed with validated primers a...Mitochondrial DNA sequences of the entire control region and three coding regions were analyzed in 108 unrelated individuals from three regions of Bangladesh. Sequence evaluation was performed with validated primers and combined sequence comparison led to the identification of 14 different haplotypes characterized by 37 variable polymorphic sites. The Bangladeshi sequences exhibited high variations and low random match probability, indicating for forensic application. The mean pairwise difference between individual was 9.698 ± 1.8658 nucleotides (95% CI 9.67 - 9.69), compared to a mean pairwise difference of 9.890 ± 4.189 nucleotides reported from Northeast Asia and suggested significant differences in the mtDNA composition of the various populations. The sequence diversity of 108 Bangladeshi Bengali samples (n = 216 chromosomes) was estimated to be 0.8475 ± 0.13406. This study first time reports that the comparison of closely related mtDNA sequences can be very useful for improving mtDNA database quality, as well as provide haplotype information for forensic study in mainstream population of Bangladesh.展开更多
Myostatin, with a highly conservative gene among breeds is a negative regulator of muscle. The 3′ coding regions of wild boar and crossbred pig myostatin were cloned by RT-PCR and sequenced respectively. The homology...Myostatin, with a highly conservative gene among breeds is a negative regulator of muscle. The 3′ coding regions of wild boar and crossbred pig myostatin were cloned by RT-PCR and sequenced respectively. The homology of the nucleotide sequence between wild boar and crossbred pig was 100% and there was no difference in this region compared with pig myostatin gene of Genbank. This indicated that there was not change of gene sequence in this region during the evolution processes.展开更多
In this work, we consider a multi-antenna channel with orthogonally multiplexed non-cooperative users, and present its achievable information rate regions with and without channel knowledge at the transmitter. With an...In this work, we consider a multi-antenna channel with orthogonally multiplexed non-cooperative users, and present its achievable information rate regions with and without channel knowledge at the transmitter. With an informed transmitter, we maximize the rate for each user. With an uninformed transmitter, we consider the optimal power allocation that causes the fastest convergence to zero of the fraction of channels whose mutual information is less than any given rate as the transmitter channel knowledge converges to zero. We assume a deterministic space and time dispersive multipath channel with multiple transmit and receive antennas, generating an orthogonally multiplexed Multiple-Input Multiple-Output (MIMO) broadcast system. Under limited transmit power;we consider different user specific space-time modulation formats that represent assignments of signal dimensions to transmit antennas. For the two-user orthogonally multiplexed MIMO broadcast channels, the achievable rate regions, with and without transmitter channel knowledge, evolve from a triangular region at low SNR to a rectangular region at high SNR. We also investigate the maximum sum rate for these regions and derive the associated power allocations at low and high SNR. Furthermore, we present numerical results for a two-user system that illustrate the effects of channel knowledge at the transmitter, the multi-dimensional space-time modulation format and features of the multipath channel.展开更多
To get the high compression ratio as well as the high-quality reconstructed image, an effective image compression scheme named irregular segmentation region coding based on spiking cortical model（ISRCS） is presented...To get the high compression ratio as well as the high-quality reconstructed image, an effective image compression scheme named irregular segmentation region coding based on spiking cortical model（ISRCS） is presented. This scheme is region-based and mainly focuses on two issues. Firstly, an appropriate segmentation algorithm is developed to partition an image into some irregular regions and tidy contours, where the crucial regions corresponding to objects are retained and a lot of tiny parts are eliminated. The irregular regions and contours are coded using different methods respectively in the next step. The other issue is the coding method of contours where an efficient and novel chain code is employed. This scheme tries to find a compromise between the quality of reconstructed images and the compression ratio. Some principles and experiments are conducted and the results show its higher performance compared with other compression technologies, in terms of higher quality of reconstructed images, higher compression ratio and less time consuming.展开更多
基金Electronic Development Fund of Ministry ofInformation Industry of China(No[2004]479)
文摘Based on the ideas of controlling relative quality and rearranging bitplanes, a new ROI coding method for JPEG2000 was proposed, which shifts and rearranges bitplanes in units of bitplane groups. It can code arbitrary shaped ROI without shape coding, and reserve almost arbitrary percent of background information. It also can control the relative quality of progressive decoded images. In addition, it is easy to be implemented and has low computational cost.
文摘In the present work, the class of metrics connected with subsets of the linear space on the field, GF(2), is considered and a number of facts are established, which allow us to express the correcting capacity of codes for the additive channel in terms of this metrics. It is also considered a partition of the metric space, Bn, by means of D-representable codes. The equivalence of D-representable and the perfect codes in the additive channel is proved.
基金Supported by Ningxia Natural Science Foundation (NZ1024)the Scientific Research the Project of Ningxia Universities (201027)~~
文摘[Objective] To discuss the effects of major mapping methods for DNA sequence on the accuracy of protein coding regions prediction,and to find out the effective mapping methods.[Method] By taking Approximate Correlation（AC） as the full measure of the prediction accuracy at nucleotide level,the windowed narrow pass-band filter（WNPBF） based prediction algorithm was applied to study the effects of different mapping methods on prediction accuracy.[Result] In DNA data sets ALLSEQ and HMR195,the Voss and Z-Curve methods are proved to be more effective mapping methods than paired numeric（PN）,Electron-ion Interaction Potential（EIIP） and complex number methods.[Conclusion] This study lays the foundation to verify the effectiveness of new mapping methods by using the predicted AC value,and it is meaningful to reveal DNA structure by using bioinformatics methods.
文摘目的基于二代测序平台评估法医常见体液样本的编码区单核苷酸多态性(coding region single nucleotide polymorphism,cSNP)在DNA和RNA水平分型一致性。方法经大量文献检索,选取外周血、精液和阴道分泌液中的8个体液特异性mRNA分子上的25个c SNP位点,基于MiSeq FGx测序平台,分别构建DNA水平的c SNP位点复合检验体系和RNA水平的cSNP位点复合检验体系,共使用45份体液样本(包括14份外周血,15份精液,16份阴道分泌液)进行测序并分析各cSNP位点的分型结果,利用Sanger测序技术对在DNA和RNA水平分型结果不一致的位点进行复核。结果外周血特异的标记在DNA和RNA水平的cSNP分型结果完全一致。在15个精液样本中,精液特异标记TGM4基因上rs1995640、rs1995641均有3例分型不一致。在16个阴道分泌液样本中,阴道分泌液特异性标记MUC22基因上rs3869098、rs10947121、rs12110470分别出现2例、1例、2例检验结果不一致的情况。结论本研究基于MiSeq FGx测序平台结合Sanger测序技术检验的25个具有体液组织特异性的cSNP位点中,共有20个位点在DNA和RNA水平分型结果一致,TGM4和MUC22基因上共5个位点在相应体液个别样本的DNA和RNA水平上有差异,本研究为cSNP在法医实战应用中评估其在DNA与RNA水平的分型一致性提供数据基础和方法参考。
基金Supported by the National Natural Science Foundation of China (60473085)
文摘A new way of indexing and processing twig patterns in an XML documents is proposed in this paper. Every path in XML document can be transformed into a sequence of labels by Structure-Encoded that constructs a one-to-one correspondence between XML tree and sequence. Base on identifying characteristics of nodes in XML tree, the elements are classified and clustered. During query proceeding, the twig pattern is also transformed into its Structure-Encoded. By performing subsequence matching on the set of sequences in XML documents, all the occurrences of path in the XML documents are refined. Using the index, the numbers of elements retrieved are minimized. The search results with pertinent format provide more structure information without any false dismissals or false alarms. The index also supports keyword search Experiment results indicate the index has significantly efficiency with high precision.
文摘Mitochondrial DNA sequences of the entire control region and three coding regions were analyzed in 108 unrelated individuals from three regions of Bangladesh. Sequence evaluation was performed with validated primers and combined sequence comparison led to the identification of 14 different haplotypes characterized by 37 variable polymorphic sites. The Bangladeshi sequences exhibited high variations and low random match probability, indicating for forensic application. The mean pairwise difference between individual was 9.698 ± 1.8658 nucleotides (95% CI 9.67 - 9.69), compared to a mean pairwise difference of 9.890 ± 4.189 nucleotides reported from Northeast Asia and suggested significant differences in the mtDNA composition of the various populations. The sequence diversity of 108 Bangladeshi Bengali samples (n = 216 chromosomes) was estimated to be 0.8475 ± 0.13406. This study first time reports that the comparison of closely related mtDNA sequences can be very useful for improving mtDNA database quality, as well as provide haplotype information for forensic study in mainstream population of Bangladesh.
文摘Myostatin, with a highly conservative gene among breeds is a negative regulator of muscle. The 3′ coding regions of wild boar and crossbred pig myostatin were cloned by RT-PCR and sequenced respectively. The homology of the nucleotide sequence between wild boar and crossbred pig was 100% and there was no difference in this region compared with pig myostatin gene of Genbank. This indicated that there was not change of gene sequence in this region during the evolution processes.
文摘In this work, we consider a multi-antenna channel with orthogonally multiplexed non-cooperative users, and present its achievable information rate regions with and without channel knowledge at the transmitter. With an informed transmitter, we maximize the rate for each user. With an uninformed transmitter, we consider the optimal power allocation that causes the fastest convergence to zero of the fraction of channels whose mutual information is less than any given rate as the transmitter channel knowledge converges to zero. We assume a deterministic space and time dispersive multipath channel with multiple transmit and receive antennas, generating an orthogonally multiplexed Multiple-Input Multiple-Output (MIMO) broadcast system. Under limited transmit power;we consider different user specific space-time modulation formats that represent assignments of signal dimensions to transmit antennas. For the two-user orthogonally multiplexed MIMO broadcast channels, the achievable rate regions, with and without transmitter channel knowledge, evolve from a triangular region at low SNR to a rectangular region at high SNR. We also investigate the maximum sum rate for these regions and derive the associated power allocations at low and high SNR. Furthermore, we present numerical results for a two-user system that illustrate the effects of channel knowledge at the transmitter, the multi-dimensional space-time modulation format and features of the multipath channel.
基金supported by the National Science Foundation of China(60872109)the Program for New Century Excellent Talents in University(NCET-06-0900)
文摘To get the high compression ratio as well as the high-quality reconstructed image, an effective image compression scheme named irregular segmentation region coding based on spiking cortical model（ISRCS） is presented. This scheme is region-based and mainly focuses on two issues. Firstly, an appropriate segmentation algorithm is developed to partition an image into some irregular regions and tidy contours, where the crucial regions corresponding to objects are retained and a lot of tiny parts are eliminated. The irregular regions and contours are coded using different methods respectively in the next step. The other issue is the coding method of contours where an efficient and novel chain code is employed. This scheme tries to find a compromise between the quality of reconstructed images and the compression ratio. Some principles and experiments are conducted and the results show its higher performance compared with other compression technologies, in terms of higher quality of reconstructed images, higher compression ratio and less time consuming.
