Methane(CH4)production from ruminants accounts for 16%of the global greenhouse gas emissions and represents 2%to 12%of feed energy.Mitigating CH_(4) production from ruminants is of great importance for sustainable dev...Methane(CH4)production from ruminants accounts for 16%of the global greenhouse gas emissions and represents 2%to 12%of feed energy.Mitigating CH_(4) production from ruminants is of great importance for sustainable development of the ruminant industry.H_(2) is the primary substrate for CH_(4) production in the processes of ruminal methanogenesis.Sulfate reducing bacteria are able to compete with methanogens for H_(2) in the rumen,and consequently inhibit the methanogenesis.Enhancing the ruminal sulfate reducing pathway is an important approach to mitigate CH_(4) emissions in ruminants.The review summarized the effects of sulfate and elemental S on ruminal methanogenesis,and clarified the related mechanisms through the impacts of sulfate and elemental S on major ruminal sulfate reducing bacteria.Enhancing the activities of the major ruminal sulfate reducing bacteria including Desulfovibrio,Desulfohalobium and Sulfolobus through dietary sulfate addition,elemental S and dried distillers grains with solubles can effectively decrease the ruminal CH_(4) emissions.Suitable levels of dietary addition with different S sources for reducing the ruminal CH_(4) production,as well as maintaining the performance and health of ruminants,need to be investigated in the future.展开更多
Hydrogen peroxide(H_(2)O_(2))is a chemical that is widely of interest in both environmental and energy fields.On the one hand,as a clean oxidant,H_(2)O_(2)has been commonly used in the field of bleaching,disinfection,...Hydrogen peroxide(H_(2)O_(2))is a chemical that is widely of interest in both environmental and energy fields.On the one hand,as a clean oxidant,H_(2)O_(2)has been commonly used in the field of bleaching,disinfection,and advanced oxidation processes.On the other hand,H_(2)O_(2)has also been explored as a liquid fuel alternative to H_(2)or fossil fuels in fuel cells due to its high energy density.However,the current industrial production of H_(2)O_(2)relies on the anthraquinone(AO)method that involves palladium-catalyzed hydrogenation-oxidation steps.展开更多
One-carbon compounds,such as formate,are promising and sustainable feedstocks for microbial bioproduction of fuels and chemicals.Growth of Escherichia coli on formate was recently achieved by introducing the reductive...One-carbon compounds,such as formate,are promising and sustainable feedstocks for microbial bioproduction of fuels and chemicals.Growth of Escherichia coli on formate was recently achieved by introducing the reductive glycine pathway(rGlyP)into its genome,which is theoretically the most energy-efficient aerobic formate assimilation pathway.While adaptive laboratory evolution was used to enhance the growth rate and biomass yield significantly,still the best performing formatotrophic E.coli strain did not approach the theoretical optimal biomass yield of the rGlyP.In this study,we investigated these previously engineered formatotrophic E.coli strains to find out why the biomass yield was sub-optimal and how it may be improved.Through a combination of metabolic modelling,genomic and proteomic analysis,we identified several potential metabolic bottlenecks and future targets for optimization.This study also reveals further insights in the evolutionary mutations and related changes in proteome allocation that supported the already substantially improved growth of formatotrophic E.coli strains.This systems-level analysis provides key insights to realize high-yield,fast growing formatotrophic strains for future bioproduction.展开更多
Bathyarchaeota is believed to play a crucial role in the global carbon cycle due to its vast biomass,broad distribution,and diverse habitat.However,its physiological and metabolic features are hard to determine withou...Bathyarchaeota is believed to play a crucial role in the global carbon cycle due to its vast biomass,broad distribution,and diverse habitat.However,its physiological and metabolic features are hard to determine without pure culture.While metagenomic analyses have shown that Bathyarchaeota has a complete inorganic carbon fixation(Wood-Ljungdahl,WL)pathway,no direct functional confirmation has been reported.To explore the inorganic carbon fixation ability of Bathyarchaeota,we used lignin and sodium bicarbonate-^(13)C(NaH^(13)CO_(3))in the long-term incubation of marine sediment samples.We found that Bathyarchaeota grew continuously in the cultivation system with lignin,and its abundance increased up to 15.3 times after10 months,increasing its fraction of all archaea from 30%to 80%.We monitored theδ^(13)C of total organic carbon to identify microbial carbon fixation in the cultivation systems,finding that it increased in the first month while NaH^(13)CO_(3)was present but only increased continuously afterward when lignin was also present.Furthermore,ultracentrifugation was performed on DNA extracted from samples at different cultivation stages to separate DNA of different buoyant densities,and bathyarchaeotal and bacterial 16S ribosomal RNA(r RNA)gene abundance were quantified using qPCR.Compared to bacteria,bathyarchaeotal 16S rRNA tended to be concentrated in heavy layers after 4 months of incubation with lignin and NaH^(13)CO_(3),indicating that Bathyarchaeota DNA contained^(13)C through proliferation based on lignin utilization and NaH^(13)CO_(3)assimilation,proving the carbon fixation capacity of Bathyarchaeota.展开更多
The toxic and recalcitrant polychlorinated biphenyls （PCBs） adversely affect human and biota by bioaccumulation and biomagnification through food chain. In this study, an anaerobic microcosm was developed to extensi...The toxic and recalcitrant polychlorinated biphenyls （PCBs） adversely affect human and biota by bioaccumulation and biomagnification through food chain. In this study, an anaerobic microcosm was developed to extensively dechlorinate hexa- and hepta-CBs in Aroclor 1260. After 4 months of incubation in defined mineral salts medium amended PCBs （70μmol· L^-1） and lactate （10 mmol· L^-1）, the culture dechlorinated hexa-CBs from 40.2% to 8.7% and hepta-CBs 33.6% to 11.6%, with dechlorination efficiencies of 78.3% and 65.5%, respectively （all in moL ratio）. This dechlorination process led to tetra-CBs （46.4%） as the predominant dechlorination products, followed by penta- （22.1%） and tri-CBs （5.4%）. The number of meta chlorines per biphenyl decreased from 2.50 to 1.41. Results of quantitative real-time PCR show that Dehalococcoides cells increased from 2.39 × 10^5±0.5× 10^5 to 4.99 ×10^7±0.32 ×10^7 copies mL^-1 after 120 days of incubation, suggesting that Dehalococcoides play a major role in reductive dechlorination of PCBs. This study could prove the feasibility of anaerobic reductive culture enrichment for the dehalogenation of highly chlorinated PCBs, which is priorto be applied for in situ biorernediation of notorious halogenated compounds.展开更多
基金National Natural Science Foundation of China(Grant number 31572428).
文摘Methane(CH4)production from ruminants accounts for 16%of the global greenhouse gas emissions and represents 2%to 12%of feed energy.Mitigating CH_(4) production from ruminants is of great importance for sustainable development of the ruminant industry.H_(2) is the primary substrate for CH_(4) production in the processes of ruminal methanogenesis.Sulfate reducing bacteria are able to compete with methanogens for H_(2) in the rumen,and consequently inhibit the methanogenesis.Enhancing the ruminal sulfate reducing pathway is an important approach to mitigate CH_(4) emissions in ruminants.The review summarized the effects of sulfate and elemental S on ruminal methanogenesis,and clarified the related mechanisms through the impacts of sulfate and elemental S on major ruminal sulfate reducing bacteria.Enhancing the activities of the major ruminal sulfate reducing bacteria including Desulfovibrio,Desulfohalobium and Sulfolobus through dietary sulfate addition,elemental S and dried distillers grains with solubles can effectively decrease the ruminal CH_(4) emissions.Suitable levels of dietary addition with different S sources for reducing the ruminal CH_(4) production,as well as maintaining the performance and health of ruminants,need to be investigated in the future.
文摘Hydrogen peroxide(H_(2)O_(2))is a chemical that is widely of interest in both environmental and energy fields.On the one hand,as a clean oxidant,H_(2)O_(2)has been commonly used in the field of bleaching,disinfection,and advanced oxidation processes.On the other hand,H_(2)O_(2)has also been explored as a liquid fuel alternative to H_(2)or fossil fuels in fuel cells due to its high energy density.However,the current industrial production of H_(2)O_(2)relies on the anthraquinone(AO)method that involves palladium-catalyzed hydrogenation-oxidation steps.
基金support of the Dutch Research Council(NWO)via the Gravitation Project BaSyC(024.003.019)In addition,N.J.C.acknowledges support from his NWO Veni fellowship(VI.Veni.192.156).
文摘One-carbon compounds,such as formate,are promising and sustainable feedstocks for microbial bioproduction of fuels and chemicals.Growth of Escherichia coli on formate was recently achieved by introducing the reductive glycine pathway(rGlyP)into its genome,which is theoretically the most energy-efficient aerobic formate assimilation pathway.While adaptive laboratory evolution was used to enhance the growth rate and biomass yield significantly,still the best performing formatotrophic E.coli strain did not approach the theoretical optimal biomass yield of the rGlyP.In this study,we investigated these previously engineered formatotrophic E.coli strains to find out why the biomass yield was sub-optimal and how it may be improved.Through a combination of metabolic modelling,genomic and proteomic analysis,we identified several potential metabolic bottlenecks and future targets for optimization.This study also reveals further insights in the evolutionary mutations and related changes in proteome allocation that supported the already substantially improved growth of formatotrophic E.coli strains.This systems-level analysis provides key insights to realize high-yield,fast growing formatotrophic strains for future bioproduction.
基金supported by the State Key R&D Project of China(Grant No.2016YFA0601102)the National Natural Science Foundation of China(Grant Nos.91751205,41525011&41867057)。
文摘Bathyarchaeota is believed to play a crucial role in the global carbon cycle due to its vast biomass,broad distribution,and diverse habitat.However,its physiological and metabolic features are hard to determine without pure culture.While metagenomic analyses have shown that Bathyarchaeota has a complete inorganic carbon fixation(Wood-Ljungdahl,WL)pathway,no direct functional confirmation has been reported.To explore the inorganic carbon fixation ability of Bathyarchaeota,we used lignin and sodium bicarbonate-^(13)C(NaH^(13)CO_(3))in the long-term incubation of marine sediment samples.We found that Bathyarchaeota grew continuously in the cultivation system with lignin,and its abundance increased up to 15.3 times after10 months,increasing its fraction of all archaea from 30%to 80%.We monitored theδ^(13)C of total organic carbon to identify microbial carbon fixation in the cultivation systems,finding that it increased in the first month while NaH^(13)CO_(3)was present but only increased continuously afterward when lignin was also present.Furthermore,ultracentrifugation was performed on DNA extracted from samples at different cultivation stages to separate DNA of different buoyant densities,and bathyarchaeotal and bacterial 16S ribosomal RNA(r RNA)gene abundance were quantified using qPCR.Compared to bacteria,bathyarchaeotal 16S rRNA tended to be concentrated in heavy layers after 4 months of incubation with lignin and NaH^(13)CO_(3),indicating that Bathyarchaeota DNA contained^(13)C through proliferation based on lignin utilization and NaH^(13)CO_(3)assimilation,proving the carbon fixation capacity of Bathyarchaeota.
基金Acknowledgements This work was financial supported by grants from the National Natural Science Foundation of China （Grant Nos. 51108014 and 41671310）.
文摘The toxic and recalcitrant polychlorinated biphenyls （PCBs） adversely affect human and biota by bioaccumulation and biomagnification through food chain. In this study, an anaerobic microcosm was developed to extensively dechlorinate hexa- and hepta-CBs in Aroclor 1260. After 4 months of incubation in defined mineral salts medium amended PCBs （70μmol· L^-1） and lactate （10 mmol· L^-1）, the culture dechlorinated hexa-CBs from 40.2% to 8.7% and hepta-CBs 33.6% to 11.6%, with dechlorination efficiencies of 78.3% and 65.5%, respectively （all in moL ratio）. This dechlorination process led to tetra-CBs （46.4%） as the predominant dechlorination products, followed by penta- （22.1%） and tri-CBs （5.4%）. The number of meta chlorines per biphenyl decreased from 2.50 to 1.41. Results of quantitative real-time PCR show that Dehalococcoides cells increased from 2.39 × 10^5±0.5× 10^5 to 4.99 ×10^7±0.32 ×10^7 copies mL^-1 after 120 days of incubation, suggesting that Dehalococcoides play a major role in reductive dechlorination of PCBs. This study could prove the feasibility of anaerobic reductive culture enrichment for the dehalogenation of highly chlorinated PCBs, which is priorto be applied for in situ biorernediation of notorious halogenated compounds.
