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Pathogenic genes and clinical prognosis in hypertrophic cardiomyopathy
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作者 Ying Hong Hu-Tao Xi +2 位作者 Xin-Yi Yang Wilber W Su Xiao-Ping Li 《World Journal of Cardiology》 2025年第1期47-54,共8页
Hypertrophic cardiomyopathy(HCM)is an autosomal dominant inherited cardiomyopathy characterized by left ventricular hypertrophy.It is one of the chief causes of sudden cardiac death in younger people and athletes.Mole... Hypertrophic cardiomyopathy(HCM)is an autosomal dominant inherited cardiomyopathy characterized by left ventricular hypertrophy.It is one of the chief causes of sudden cardiac death in younger people and athletes.Molecular-genetic studies have confirmed that the vast majority of HCM is caused by mutations in genes encoding sarcomere proteins.HCM has a relatively wide phenotypic heterogeneity,varying from asymptomatic to sudden cardiac death,because of the many different mutations and pathogenic genes underlying it.Many studies have explored the clinical symptoms and prognosis of HCM,emphasizing the importance of genotype in evaluating patient prognosis and guiding the clinical management of HCM.To elaborate the main pathogenic genes and phenotypic prognosis in HCM to promote a better understanding of this genetic disease.Retrospective analysis of literature to evaluate the association between underlying gene mutations and clinical phenotypes in HCM patients.As sequencing technology advances,the pathogenic gene mutation spectrum and phenotypic characteristics of HCM are gradually becoming clearer.HCM is a widespread inherited disease with a highly variable clinical phenotype.The precise mechanisms linking known pathogenic gene mutations and the clinical course of this heterogeneous condition remain elusive. 展开更多
关键词 Hypertrophic cardiomyopathy GENOTYPE PHENOTYPE Pathogenic genes PROGNOSIS
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Study of pathogenic genes in a pedigree with familial dilated cardiomyopathy 被引量:1
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作者 Xin-Ru Zhang Hang Ren +2 位作者 Fang Yao Yang Liu Chun-Li Song 《World Journal of Clinical Cases》 SCIE 2023年第11期2412-2422,共11页
BACKGROUND Dilated cardiomyopathy(DCM)is a genetically heterogeneous cardiac disorder characterized by left ventricular dilation and contractile dysfunction.The substantial genetic heterogeneity evident in patients wi... BACKGROUND Dilated cardiomyopathy(DCM)is a genetically heterogeneous cardiac disorder characterized by left ventricular dilation and contractile dysfunction.The substantial genetic heterogeneity evident in patients with DCM contributes to variable disease severity and complicates overall prognosis,which can be very poor.AIM To identify pathogenic genes in DCM through pedigree analysis.METHODS Our research team identified a patient with DCM in the clinic.Through invest-igation,we found that the family of this patient has a typical DCM pedigree.High-throughput sequencing technology,next-generation sequencing,was used to sequence the whole exomes of seven samples in the pedigree.RESULTS A novel and potentially pathogenic gene mutation-ANK2p.F3067L-was discovered.The mutation was completely consistent with the clinical information for this DCM pedigree.Sanger sequencing was used to further verify the locus of the mutation in pedigree samples.These results were consistent with those of high-throughput sequencing.CONCLUSIONS ANK2p.F3067L is considered a novel and potentially pathogenic gene mutation in DCM. 展开更多
关键词 Dilated cardiomyopathy Gene mutation Whole exomes sequencing Sanger sequencing ANK2p.F3067L Potentially pathogenic gene
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Bioinformatics Analysis on Pathogenic Genes of Botrytis cinerea Pers. 被引量:2
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作者 Qiang ZHANG Wenting DAI +1 位作者 Xinwen JIN Xuhui WANG 《Agricultural Biotechnology》 CAS 2018年第1期57-61,86,共6页
With reported pathogenic genes of Botrytis cirterea Pers. and unknown proteins related to pathogencity as experimental materials, the pathogenic genes were studied by bioinformatics methods, and these unknown proteins... With reported pathogenic genes of Botrytis cirterea Pers. and unknown proteins related to pathogencity as experimental materials, the pathogenic genes were studied by bioinformatics methods, and these unknown proteins were analyzed with bioinforrnaties tools and softwares, so as to lay a theoretical basis for the control of tomato grey mould at molecular level in future. The results showed that through the alignment analysis by DNAMAN software, three pairs of unknown pro- teins with higher comprehensive matching degrees were obtained, and these proteins were predicted to be coded by hrp gene cluster of type Ili secretion system; through Bioedit and ProtParam, the amino acid composition, size, molecular weight, isoelectrie point and hydrophobicity of the each of the six unknown proteins were obtained; and corresponding secondary structures were obtained using DNAMAN. The results of this study could guide deep research of such genes. 展开更多
关键词 TOMATO Grey mould Pathogenic gene BIOINFORMATICS
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水稻白叶枯病菌在寄主体内外不同生长条件下致病基因差异表达的分析 被引量:1
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作者 高世强 张新建 +1 位作者 吴茂森 何晨阳 《植物病理学报》 CAS CSCD 北大核心 2009年第6期653-658,共6页
To demonstrate the expression profiling of Xanthomonas oryzae pv.oryzae(Xoo) in vitro and in planta,DNA microarrays of 371 genes potentially associated with pathogenicity and virulence were used to compare the transcr... To demonstrate the expression profiling of Xanthomonas oryzae pv.oryzae(Xoo) in vitro and in planta,DNA microarrays of 371 genes potentially associated with pathogenicity and virulence were used to compare the transcriptional level alteration of the wild-type strain PXO99A and gene deletion mutants ΔgacAxoo and ΔfleQxoo of Xoo grown in the rich medium NBY vs.hrp-inducing minimal medium XOM2 or leaf tissues of rice.Results indicated that 17 and 38 genes of PXO99A were differentially expressed in XOM2 and the leaf tissues of rice relative to NBY,respectively.Twenty-eight genes of ΔgacAxoo grown in XOM2 and 12 genes of ΔfleQxoo in NBY were differentially expressed relative to PXO99A.The identification of differentially-expressed genes,GacAxoo-and FleQxoo-regulons and novel candidate genes of Xoo strains would provide us the target genes for further functional analysis in pathogenesis of Xoo. 展开更多
关键词 Xanthomonas oryzae pv.oryzae growth in vitro and in planta DNA microarrays pathogenicity gene differentially-expressed genes
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Adaptation of pine wood nematode,Bursaphelenchus xylophilus,early in its interaction with two Pinus species that differ in resistance 被引量:2
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作者 Yaqi Feng Lin Rui +1 位作者 Xinyu Wang Xiaoqin Wu 《Journal of Forestry Research》 SCIE CAS CSCD 2022年第4期1391-1400,共10页
Pine wilt disease(PWD)is one of the most devastating diseases of Pinu s spp.and is caused by the pine wood nematode(PWN),Bursaphelenchus xylophilus(Steiner&Buhrer)Nickle.To study adaptation of PWN to survive in ho... Pine wilt disease(PWD)is one of the most devastating diseases of Pinu s spp.and is caused by the pine wood nematode(PWN),Bursaphelenchus xylophilus(Steiner&Buhrer)Nickle.To study adaptation of PWN to survive in hosts that differ in resistance,we examined the self-regulatory characteristics of PWN at the biological and molecular levels early in the interaction.Two-year-old susceptible Pinus thunbergii and resistant Pinus taeda were selected for this experiment,and changes in PWNs after inoculation were assessed.q RT-PCR was used to detect changes in genes related to PWN pathogenicity and detoxification.The results showed that the migration and reproductive abilities of PWNs in P.thunbergii were stronger than those of PWNs in P.taeda.After 7 d,the number of nematodes in P.thunbergii was approximately 3.2-fold higher than in P.taeda.After 15 d,the number of nematodes in P.thunbergii was approximately twofold higher than that in P.taeda.Because PWN can adjust its sex ratio after infection,we compared the sex ratio of uninoculated PWNs,to that in the two pine species.In P.thunbergii,the female to male ratio first decreased and then stabilized over time;in P.taeda first decreased and then increased.Relative fat accumulation in PWNs increased significantly after the PWNs entered the tree body;the accumulation rate in P.thunbergii was higher than in P.taeda at 7 d,but lower after 15 d.Scanning electron microscopy(SEM)showed significantly more bacteria on the surface of PWNs in P.taeda compared with PWNs in susceptible P.thunbergii.At 12 h after inoculation,the expression of genes related to cell-wall degradation(Bx Beta1-4 and Bxpel1),effectors(Bx CDP1,Bx Sap B1),and active oxygen metabolism(Bxy-ctl-1 and Bx GST3)was 2–6×higher in the resistant pine than in the susceptible one.In contrast,in PWNs,the expression of autophagy-related genes Bx ATG1 and Bx ATG16 was 1.5–2 times higher in P.thunbergii than in P.taeda.These results indicate that the interaction between PWNs and pine trees with different resistance levels elicits a series of physiological and molecular adaptations that affect nematode reproduction and virulence.This study will help elucidate the adaptive mechanisms of PWN in different pine trees. 展开更多
关键词 Pine wood nematode SELF-REGULATION Pinus thunbergii Pinus taeda pathogenicity and detoxificationrelated genes
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Characterization of an Organ Specific and Pathogen Responsive CC-NBS-LRR Gene from Cotton(Gossypium hirsutum L.) 被引量:3
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作者 ZHANG Bao-long,NI Wan-chao,YANG Yu-wen,SHEN Xin-lian(Institute of Agro-biotechnology,Jiangsu Academy of Agricultural Sciences,Zhongling Street 50,Nanjing 210014,China) 《棉花学报》 CSCD 北大核心 2008年第S1期74-,共1页
Cotton diseases represent a major challenge to cotton growth.Cloning of a cotton pathogen response gene and promoter is of great importance to improve disease resistance.In this study,a
关键词 LRR NBS Characterization of an Organ Specific and Pathogen Responsive CC-NBS-LRR Gene from Cotton CC
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Evaluation of bacterial pathogen diversity,abundance and health risks in urban recreational water by amplicon next-generation sequencing and quantitative PCR 被引量:7
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作者 Qijia Cui Tingting Fang +2 位作者 Yong Huang Peiyan Dong Hui Wang 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2017年第7期137-149,共13页
The microbial quality of urban recreational water is of great concern to public health.The monitoring of indicator organisms and several pathogens alone is not sufficient to accurately and comprehensively identify mic... The microbial quality of urban recreational water is of great concern to public health.The monitoring of indicator organisms and several pathogens alone is not sufficient to accurately and comprehensively identify microbial risks.To assess the levels of bacterial pathogens and health risks in urban recreational water,we analyzed pathogen diversity and quantified four pathogens in 46 water samples collected from waterbodies in Beijing Olympic Forest Park in one year.The pathogen diversity revealed by 16 S r RNA gene targeted next-generation sequencing(NGS) showed that 16 of 40 genera and 13 of 76 reference species were present.The most abundant species were Acinetobacter johnsonii,Mycobacterium avium and Aeromonas spp.Quantitative polymerase chain reaction(q PCR) of Escherichia coli(uid A),Aeromonas(aer A),M.avium(16S r RNA),Pseudomonas aeruginosa(oaa) and Salmonella(inv A) showed that the aer A genes were the most abundant,occurring in all samples with concentrations of 10^(4–6) genome copies/100 m L,followed by oaa,inv A and M.avium.In total,34.8% of the samples harbored all genes,indicating the prevalence of these pathogens in this recreational waterbody.Based on the q PCR results,a quantitative microbial risk assessment(QMRA) showed that the annual infection risks of Salmonella,M.avium and P.aeruginosa in five activities were mostly greater than the U.S.EPA risk limit for recreational contacts,and children playing with water may be exposed to the greatest infection risk.Our findings provide a comprehensive understanding of bacterial pathogen diversity and pathogen abundance in urban recreational water by applying both NGS and q PCR. 展开更多
关键词 Human pathogens Urban water Recreational activities 16S rRNA gene targeted NGS qPCR Quantitative microbial risk assessment
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A Mutant Gene Found to Be the Pathogenic Origin of Infantile Cataract
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作者 (Zhao Baohua Guo Haiyan) 《Bulletin of the Chinese Academy of Sciences》 2002年第3期137-137,共1页
  According to a report in the June 24 issue of Nature Genetics, mutations in a gene named heat-shock transcription factor 4 (HSF4) have been discovered to be responsible for lamellar and Marner cataract. Experts be...   According to a report in the June 24 issue of Nature Genetics, mutations in a gene named heat-shock transcription factor 4 (HSF4) have been discovered to be responsible for lamellar and Marner cataract. Experts believe that this will open new horizons for revealing the pathogenic origin of congenital cataract. …… 展开更多
关键词 BE A Mutant Gene Found to Be the Pathogenic Origin of Infantile Cataract HSF
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Molecular basis of pathogenesis of postharvest pathogenic Fungi and control strategy in fruits: progress and prospect 被引量:7
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作者 Zhan-Quan Zhang Tong Chen +2 位作者 Bo-Qiang Li Guo-Zheng Qin Shi-Ping Tian 《Molecular Horticulture》 2021年第1期183-192,共10页
The disease caused by pathogenic fungi is the main cause of postharvest loss of fresh fruits.The formulation of disease control strategies greatly depends on the understanding of pathogenic mechanism of fungal pathoge... The disease caused by pathogenic fungi is the main cause of postharvest loss of fresh fruits.The formulation of disease control strategies greatly depends on the understanding of pathogenic mechanism of fungal pathogens and control strategy.In recent years,based on the application of various combinatorial research methods,some pathogenic genes of important postharvest fungal pathogens in fruit have been revealed,and their functions and molecular regulatory networks of virulence have been explored.These progresses not only provide a new perspective for understanding the molecular basis and regulation mechanism of pathogenicity of postharvest pathogenic fungi,but also are beneficial to giving theoretical guidance for the creation of new technologies of postharvest disease control.Here,we synthesized these recent advances and illustrated conceptual frameworks,and identified several issues on the focus of future studies. 展开更多
关键词 Pathogenic genes Regulation mechanism Postharvest disease Control strategy FRUIT
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Arhgap29 deficiency causes EEC like syndrome in mice
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作者 Dandan Chi Yumeng Wang +5 位作者 Lili Yu Wenyan Ruan Beibei Zhang Jian Ma Xiaohong Duan Yongqing Huang 《Genes & Diseases》 2025年第4期54-57,共4页
Cleft lip/palate(CL/P)is generally divided into two main types,non-syndromic and syndromic CL/P,with a global incidence of approximately 1 in 700.^(1)Previous studies have identified various susceptibility genes assoc... Cleft lip/palate(CL/P)is generally divided into two main types,non-syndromic and syndromic CL/P,with a global incidence of approximately 1 in 700.^(1)Previous studies have identified various susceptibility genes associated with non-syndromic CL/P,while the pathogenic gene of syndromic CL/P and the related mechanisms are not well docu-mented.Ectrodactylyeectodermal dysplasiaecleft lip/palate(EEC)syndrome is a representative syndromic CL/P. 展开更多
关键词 cleft lip palate susceptibility genes non syndromic cleft lip palate pathogenic gene arhgap deficiency EEC syndrome syndromic cleft lip palate ECTRODACTYLY
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Epidemiological and phylogenetic characteristics of human metapneumovirus in Beijing,China,2014–2024
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作者 Aihua Li Cheng Gong +12 位作者 Liang Wang Yuling Han Lu Kang Geng Hu Jian Cao Maozhong Li Xuejiao Guan Ming Luo Lei Yu Yuchuan Li Fang Huang George F.Gao Quanyi Wang 《Signal Transduction and Targeted Therapy》 2025年第10期5514-5523,共10页
In November 2024,there was an unusual surge in human metapneumovirus(hMPV)infection cases in Beijing.We performed an epidemiological investigation among cases with acute respiratory tract infection(ARTI).We enrolled A... In November 2024,there was an unusual surge in human metapneumovirus(hMPV)infection cases in Beijing.We performed an epidemiological investigation among cases with acute respiratory tract infection(ARTI).We enrolled ARTI cases from 35 sentinel hospitals,collected samples and medical records,conducted comprehensive pathogen testing,sequenced target genes or whole genomes,and performed phylogenetic analysis.A total of 79,793 cases were included in this study from 2014 to 2024.The hMPV epidemic exhibited typical seasonality from December to April of the following year,with an overall positivity rate of hMPV of 1.6%.The positivity rate of hMPV was highest in the 0–4 year age group(3.4%)and remained relatively high(1.2%)among populations over 60 years of age.Genotypes A and B were cocirculated,with predominant genotypes alternating every two years.We identified two variants of A2c with 180 or 111 nucleotide duplications in the G gene since 2016,and the A2c_(111nt-dup)has been predominant(56.9%)over the parent A2c since 2018.HMPV infection experienced an unusual surge beginning in November 2024 and peaked in December(9.5%).Subgenotype B2(98.3%)returned to the predominant position instead of the A2c_(111nt-dup)and seemed to be associated with milder illness.Twenty hMPV isolates collected in 2024 were identified as known subgenotypes(A2c and B2)via whole-genome analyses.In conclusion,hMPV exhibited a typical seasonality in Beijing,with the predominant genotypes alternating every two years.Its unusual surge in November 2024 was attributed to the reoccurrence of hMPV B2 rather than a novel variant. 展开更多
关键词 whole genomesand EPIDEMIOLOGY acute respiratory tract infection arti we medical recordsconducted human metapneumovirus hmpv infection epidemiological investigation phylogenetic analysisa pathogen testingsequenced target genes
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Reproductive medicine and congenital heart disease 被引量:1
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作者 Wei Sheng Guoying Huang 《Journal of Bio-X Research》 2018年第3期124-127,共4页
With the development of medical genetics,reproductive medicine has made considerable contributions to treatment of birth defects,a reduction in the incidence of birth defects,implementation of eugenics and fertility,a... With the development of medical genetics,reproductive medicine has made considerable contributions to treatment of birth defects,a reduction in the incidence of birth defects,implementation of eugenics and fertility,and improvement of population quality.Congenital heart disease is a common birth defect and is the most serious among all birth defect diseases and seriously endangers the physical and mental health of children in China.In this article,we review the latest research progress of congenital heart disease in the field of reproduction. 展开更多
关键词 BIOINFORMATICS birth defect chromosomal abnormality DNA methylation environmental pollution high-throughput sequencing histone modification medical genetics MICRO-ARRAY MICRORNA pathogenic gene
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Genetic polymorphisms,biomarkers and signaling pathways associated with septic shock:from diagnosis to therapeutic targets
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作者 Mingzheng Wu Bobin Mi +5 位作者 Liu Liu Haoli Ma Cheng Jiang Shan Jiang Yulin Li Yan Zhao 《Burns & Trauma》 2024年第1期393-411,共19页
Septic shock is a severe form of sepsis characterized by high global mortality rates and significant heritability.Clinicians have long been perplexed by the differential expression of genes,which poses challenges for ... Septic shock is a severe form of sepsis characterized by high global mortality rates and significant heritability.Clinicians have long been perplexed by the differential expression of genes,which poses challenges for early diagnosis and prompt treatment of septic shock.Genetic polymorphisms play crucial roles in determining susceptibility to,mortality from,and the prognosis of septic shock.Research indicates that pathogenic genes are known to cause septic shock through specific alleles,and protective genes have been shown to confer beneficial effects on affected individuals.Despite the existence of many biomarkers linked to septic shock,their clinical use remains limited.Therefore,further investigation is needed to identify specific biomarkers that can facilitate early prevention,diagnosis and risk stratification.Septic shock is closely associated with multiple signaling pathways,including the toll-like receptor 2/toll-like receptor 4,tumor necrosis factor-α,phosphatidylinositol 3-kinase/protein kinase B,mitogen-activated protein kinase,nuclear factorκB,Janus kinase/signal transducer and activator of transcription,mammalian target of rapamycin,NOD-like receptor thermal protein domain-associated protein 3 and hypoxia-induced-factor-1 pathways.Understanding the regulation of these signaling pathways may lead to the identification of therapeutic targets for the development of novel drugs to treat sepsis or septic shock.In conclusion,identifying differential gene expression during the development of septic shock allows physicians to stratify patients according to risk at an early stage.Furthermore,auxiliary examinations can assist physicians in identifying therapeutic targets within relevant signaling pathways,facilitating early diagnosis and treatment,reducing mortality and improving the prognosis of septic shock patients.Although there has been significant progress in studying the genetic polymorphisms,specific biomarkers and signaling pathways involved in septic shock,the journey toward their clinical application and widespread implementation still lies ahead. 展开更多
关键词 Septic shock SEPSIS Gene polymorphism Pathogenic gene BIOMARKER Signaling pathway
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