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氨基酸与钠离子非共价键相互作用的电喷雾质谱研究 被引量:3
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作者 吴胜明 杨松成 +6 位作者 王杰 王鸿丽 刘炳玉 李爱玲 何昆 魏开华 张学敏 《分析测试学报》 CAS CSCD 北大核心 2004年第z1期66-67,共2页
  实验研究中常常观察到钠离子与一些多肽或蛋白质有较强的非共价键结合能力,这种非共价键相互作用可能与生物的一些功能和活性有关.为了进一步了解这一结合作用,我们应用电喷雾质谱研究了常见的20种氨基酸与钠离子在溶液中的非共价...   实验研究中常常观察到钠离子与一些多肽或蛋白质有较强的非共价键结合能力,这种非共价键相互作用可能与生物的一些功能和活性有关.为了进一步了解这一结合作用,我们应用电喷雾质谱研究了常见的20种氨基酸与钠离子在溶液中的非共价键相互作用.实验研究中发现脯氨酸和苯丙胺酸与钠离子有较强的非共价键结合能力.…… 展开更多
关键词 Sodium ion Amino acids non - covalent interaction ESI - MS
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Learning non-local molecular interactions via equivariant local representations and charge equilibration
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作者 Paul Fuchs MichałSanocki Julija Zavadlav 《npj Computational Materials》 2025年第1期3124-3133,共10页
Graph Neural Network(GNN)potentials relying on chemical locality offer near-quantum mechanical accuracy at significantly reduced computational costs.Message-passing GNNs model interactions beyond their immediate neigh... Graph Neural Network(GNN)potentials relying on chemical locality offer near-quantum mechanical accuracy at significantly reduced computational costs.Message-passing GNNs model interactions beyond their immediate neighborhood by propagating local information between neighboring particles while remaining effectively local.However,locality precludes modeling long-range effects critical to many real-world systems,such as charge transfer,electrostatic interactions,and dispersion effects.In this work,we propose the Charge Equilibration Layer for Long-range Interactions(CELLI)to address the challenge of efficiently modeling non-local interactions.This novel architecture generalizes the classical charge equilibration(Qeq)method to a model-agnostic building block for modern equivariant GNN potentials.Therefore,CELLI extends the capability of GNNs to model longrange interactions while providing high interpretability through explicitly modeled charges.On benchmark systems,CELLI achieves state-of-the-art results for strictly local models.CELLI generalizes to diverse datasets and large structureswhile providing high computational efficiency and robust predictions. 展开更多
关键词 chemical locality charge transferelectrostatic interactionsand graph neural network gnn potentials non local molecular interactions charge equilibration graph neural network equivariant local representations propagating local information
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