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Identification of therapeutic targets for giant cell arteritis through integrated analysis of multi-omics datasets
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作者 Bi-Qing Huang Yi-Xiao Tian Lan-Juan Li 《Hepatobiliary & Pancreatic Diseases International》 2026年第1期62-75,共14页
Background:Giant cell arteritis(GCA),the most common systemic vasculitis affecting elderly individuals,currently lacks specific therapies.This study aimed to systematically identify therapeutic targets for GCA through... Background:Giant cell arteritis(GCA),the most common systemic vasculitis affecting elderly individuals,currently lacks specific therapies.This study aimed to systematically identify therapeutic targets for GCA through integration of large-scale multi-omics datasets.Methods:We constructed a multi-stage analytical framework encompassing 32 proteomic datasets(covering 2914 unique plasma proteins)and 6 transcriptomic datasets.Multi-omics integration strategies,including two-sample Mendelian randomization,colocalization analysis,and functional enrichment analysis,were employed to identify and validate causal relationships between candidate targets and GCA risk across 4 independent European-ancestry GCA cohorts.Single-cell RNA sequencing analysis of peripheral blood mononuclear cells from untreated GCA patients was performed to characterize hub gene-immune cell relationships.Results:We identified 43 plasma proteins causally associated with GCA[false discovery rate(FDR)<0.05],with 17 representing novel therapeutic targets.Through dual validation using proteome-wide association studies and transcriptome-wide association studies,we identified 13 high-confidence candidate targets with distinct tissue-specific expression patterns.Unc-51 like kinase 3(ULK3)emerged as the strongest protective factor(odds ratio=0.47,95%confidence interval:0.37–0.71)through autophagy regulation,while SLAMF7 represents an immediate drug repositioning opportunity as the target of food and drug administration-approved elotuzumab.Five targets have existing approved drugs(SLAMF7,ICAM1,IL18,IL6ST,CTSS).Single-cell analysis revealed profound disruption of hub gene-immune cell relationships in untreated GCA patients,with cell-type-specific alterations in inflammatory gene expression,and TYMP as the most critical hub gene.Conclusions:This study provides a clinically-actionable atlas of 43 potential therapeutic targets in GCA,identifying novel mechanisms including autophagy modulation and metabolic reprogramming,with immediate drug repositioning opportunities and precision medicine strategies based on tissue-specific and cell-type-specific expression patterns.These findings require experimental validation before clinical translation. 展开更多
关键词 Giant cell arteritis Therapeutic targets Drug repositioning multi-omics integration Precision medicine Mendelian randomization
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Motion Performance Analysis of Offshore Lifting for Wind-Fishery Integrated Aquaculture Net Cage Considering Multi-Body Coupling Effects
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作者 WANG Wanqi YU Tongshun +2 位作者 LU Peng ZHAO Hui TAO Wei 《南方能源建设》 2026年第1期1-15,共15页
[Objective]This study aims to investigate the multi-body hydrodynamic interaction mechanisms during offshore lifting operations of aquaculture net cages in wind-fishery integration systems.By integrating numerical sim... [Objective]This study aims to investigate the multi-body hydrodynamic interaction mechanisms during offshore lifting operations of aquaculture net cages in wind-fishery integration systems.By integrating numerical simulations and dynamic analysis methods,this study systematically investigates the coupled dynamic response characteristics during the cage-carrier vessel separation process to reveal its dynamic evolution patterns and key influence mechanisms.[Method]Based on potential flow theory,a fully coupled dynamic analysis model of crane vessel-net cage-semi-submersible barge was established for a marine ranch project in Guangdong.The complete lifting process was dynamically simulated using SESAM software.Five typical operating sea states were configured to investigate the influence of wave parameters on the system's motion response under combined wave-current-wind actions.[Result]The results demonstrate that wave period dominates the system stability.Under short-period conditions,the system maintains stable motion with relatively small horizontal relative displacements,while long-period conditions excite low-frequency resonance,leading to significant slow-drift motions.Vertical response analysis reveals that long-period waves cause severe relative displacement fluctuations between the cage and semi-submersible vessel,with actual displacement amplitudes doubling the preset safety target of 2.045 m.Quantitative analysis further indicates that when significant wave height increases from 1.0 m to 1.5 m,the actual displacement amplitude increases by approximately 20%relative to the target displacement of 2.045 m,demonstrating that its influence is significantly weaker than the displacement variations induced by wave period changes.The complete dynamic simulation successfully captures the continuous dynamic response characteristics during the lifting process.[Conclusion]This research clarifies the influence mechanisms of wave parameters on the cage lifting process,identifying wave period as the crucial factor for operational safety.An operation window assessment method incorporating multi-body coupling effects is established,proposing a safety criterion with peak period not exceeding six seconds as the core requirement.The findings provide theoretical foundation for safe installation of marine ranch net cages and offer valuable references for similar offshore lifting operations. 展开更多
关键词 wind-fishery integration offshore lifting hydrodynamic analysis multi-body coupling analysis motion response safe operation window
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Structural Reliability Analysis Based on Differential Evolution Algorithm and Hypersphere Integration
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作者 CHEN Zhenzhong HAN Zhuo +4 位作者 WANG Peiyu PAN Qianghua LI Xiaoke GAN Xuehui CHEN Ge 《Journal of Donghua University(English Edition)》 2026年第1期118-130,共13页
In reliability analyses,the absence of a priori information on the most probable point of failure(MPP)may result in overlooking critical points,thereby leading to biased assessment outcomes.Moreover,second-order relia... In reliability analyses,the absence of a priori information on the most probable point of failure(MPP)may result in overlooking critical points,thereby leading to biased assessment outcomes.Moreover,second-order reliability methods exhibit limited accuracy in highly nonlinear scenarios.To overcome these challenges,a novel reliability analysis strategy based on a multimodal differential evolution algorithm and a hypersphere integration method is proposed.Initially,the penalty function method is employed to reformulate the MPP search problem as a conditionally constrained optimization task.Subsequently,a differential evolution algorithm incorporating a population delineation strategy is utilized to identify all MPPs.Finally,a paraboloid equation is constructed based on the curvature of the limit-state function at the MPPs,and the failure probability of the structure is calculated by using the hypersphere integration method.The localization effectiveness of the MPPs is compared through multiple numerical cases and two engineering examples,with accuracy comparisons of failure probabilities against the first-order reliability method(FORM)and the secondorder reliability method(SORM).The results indicate that the method effectively identifies existing MPPs and achieves higher solution precision. 展开更多
关键词 reliability analysis design point positioning differential evolution algorithm hypersphere integration
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Deciphering Haplotype-level Chromosome Conformation Alteration in Down Syndrome by Haplotype-resolved Multi-omics Analysis
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作者 Chengchao Wu Tianshu Zhou +16 位作者 Wenfu Ke Wei Xiong Zhihui Zhang Siheng Zhang Jinyue Wang Lulu Deng Keji Yan Man Wang Shenglong He Qi Gong Chao Ma Xiaping Chen Yan Li He Long Chong Guo Gang Cao Zhijun Zhang 《Genomics, Proteomics & Bioinformatics》 2025年第4期33-44,共12页
For chromosome abnormalities(CAs),such as Down syndrome(DS),the influence of genomic variations on chromosome conformation and gene transcription remains elusive.Based on the complete genomic sequences from the parent... For chromosome abnormalities(CAs),such as Down syndrome(DS),the influence of genomic variations on chromosome conformation and gene transcription remains elusive.Based on the complete genomic sequences from the parents of a DS trisomy patient,we systematically delineated an atlas of parental-specific,haplotype-resolved single nucleotide polymorphisms(SNPs),copy number variations(CNVs),threedimensional(3D)genome architecture,and RNA expression profiles in the diencephalon of the DS patient.The integrated haplotype-resolved multi-omics analysis demonstrated that one-dimensional(1D)genomic variations including SNPs and CNVs in the DS patient are highly correlated with the alterations in the 3D genome organization and the subsequent changes in gene transcription.This correlation remains valid at the haplotype level.Moreover,we revealed the 3D genome alteration-associated dysregulation of DS-related genes,which facilitates understanding the pathogenesis of CAs.Together,our study contributes to deciphering the coding from 1D genomic variations to 3D genome architecture and the subsequent gene transcription outcomes in both health and disease. 展开更多
关键词 Haplotype-resolved multi-omics analysis Chromosome conformation Down syndrome Parental allele-specific Transcriptional regulation
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Transient analysis of functionally graded curved shells using a nonuniform shape parameter integrated radial basis function approach
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作者 Vay Siu Lo Andrzej Katunin Thien Tich Truong 《Theoretical & Applied Mechanics Letters》 2025年第3期296-308,共13页
In this study,an improved integrated radial basis function with nonuniform shape parameter is introduced.The proposed shape parameter varies in each support domain and is defined byθ=1/d_(max),where d_(max)is the max... In this study,an improved integrated radial basis function with nonuniform shape parameter is introduced.The proposed shape parameter varies in each support domain and is defined byθ=1/d_(max),where d_(max)is the maximum distance of any pair of nodes in the support domain.The proposed method is verified and shows good performance.The results are stable and accurate with any number of nodes and an arbitrary nodal distribution.Notably,the support domain should be large enough to obtain accurate results.This method is then applied for transient analysis of curved shell structures made from functionally graded materials with complex geometries.Through several numerical examples,the accuracy of the proposed approach is demonstrated and discussed.Additionally,the influence of various factors on the dynamic behavior of the structures,including the power-law index,different materials,loading conditions,and geometrical parameters of the structures,was investigated. 展开更多
关键词 integrated radial basis function Shape parameter Functionally graded material Curved shell Transient analysis
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Integrated Sensing and Communication Enabled Sensing Base Station:System Design,Beamforming,Interference Cancellation and Performance Analysis
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作者 Jiang Wangjun Wei Zhiqing +1 位作者 Feng Zhiyong Chen Xu 《China Communications》 2025年第1期111-127,共17页
This paper studies the sensing base station(SBS)that has great potential to improve the safety of vehicles and pedestrians on roads.SBS can detect the targets on the road with communication signals using the integrate... This paper studies the sensing base station(SBS)that has great potential to improve the safety of vehicles and pedestrians on roads.SBS can detect the targets on the road with communication signals using the integrated sensing and communication(ISAC)technique.Compared with vehicle-mounted radar,SBS has a better sensing field due to its higher deployment position,which can help solve the problem of sensing blind areas.In this paper,key technologies of SBS are studied,including the beamforming algorithm,beam scanning scheme,and interference cancellation algorithm.To transmit and receive ISAC signals simultaneously,a double-coupling antenna array is applied.The free detection beam and directional communication beam are proposed for joint communication and sensing to meet the requirements of beamwidth and pointing directions.The joint timespace-frequency domain division multiple access algorithm is proposed to cancel the interference of SBS,including multiuser interference and duplex interference between sensing and communication.Finally,the sensing and communication performance of SBS under the industrial scientific medical power limitation is analyzed and simulated.Simulation results show that the communication rate of SBS can reach over 100 Mbps and the range of sensing and communication can reach about 500 m. 展开更多
关键词 BEAMFORMING integrated sensing and communication(ISAC) interference cancellation performance analysis sensing base station
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Performance analysis in 3G/ad hoc integrated network
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作者 李旭杰 沈连丰 《Journal of Southeast University(English Edition)》 EI CAS 2011年第3期233-238,共6页
An analytical approach to evaluate the performance of the 3G/ad hoc integrated network is presented. A channel model capturing both path loss and shadowing is applied to the analysis so as to characterize power fallof... An analytical approach to evaluate the performance of the 3G/ad hoc integrated network is presented. A channel model capturing both path loss and shadowing is applied to the analysis so as to characterize power falloff vs. distance. The 3G/ad hoc integrated network scenario model is introduced briefly. Based on this model, several performances of the 3G/ ad hoc integrated network in terms of outage probability, call dropping probability and new call blocking probability are evaluated. The corresponding performance formulae are deduced in accordance with the analytical models. Meanwhile, the formula of the 3G/ad hoc integrated network capacity is deduced on the basis of the formula of the outage probability. It is observed from extensive simulation and numerical analysis that the 3G/ad hoc integrated network remarkably outperforms the 3G network with regards to the network performance. This derived evaluation approach can be applied into planning and optimization of the 3G/ad hoc network. 展开更多
关键词 performance analysis 3G network ad hoc network integrated network
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Harnessing deep learning for the discovery of latent patterns in multi-omics medical data
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作者 Okechukwu Paul-Chima Ugwu Fabian COgenyi +8 位作者 Chinyere Nkemjika Anyanwu Melvin Nnaemeka Ugwu Esther Ugo Alum Mariam Basajja Joseph Obiezu Chukwujekwu Ezeonwumelu Daniel Ejim Uti Ibe Michael Usman Chukwuebuka Gabriel Eze Simeon Ikechukwu Egba 《Medical Data Mining》 2026年第1期32-45,共14页
The rapid growth of biomedical data,particularly multi-omics data including genomes,transcriptomics,proteomics,metabolomics,and epigenomics,medical research and clinical decision-making confront both new opportunities... The rapid growth of biomedical data,particularly multi-omics data including genomes,transcriptomics,proteomics,metabolomics,and epigenomics,medical research and clinical decision-making confront both new opportunities and obstacles.The huge and diversified nature of these datasets cannot always be managed using traditional data analysis methods.As a consequence,deep learning has emerged as a strong tool for analysing numerous omics data due to its ability to handle complex and non-linear relationships.This paper explores the fundamental concepts of deep learning and how they are used in multi-omics medical data mining.We demonstrate how autoencoders,variational autoencoders,multimodal models,attention mechanisms,transformers,and graph neural networks enable pattern analysis and recognition across all omics data.Deep learning has been found to be effective in illness classification,biomarker identification,gene network learning,and therapeutic efficacy prediction.We also consider critical problems like as data quality,model explainability,whether findings can be repeated,and computational power requirements.We now consider future elements of combining omics with clinical and imaging data,explainable AI,federated learning,and real-time diagnostics.Overall,this study emphasises the need of collaborating across disciplines to advance deep learning-based multi-omics research for precision medicine and comprehending complicated disorders. 展开更多
关键词 deep learning multi-omics integration biomedical data mining precision medicine graph neural networks autoencoders and transformers
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AI-assisted design of 3 D-printed prosthesis for integrated replacement of the hip,femur,and knee caused by osseous hydatidosis
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作者 Yanlong Han Haoyuan Lei +7 位作者 Ruozhen Jia Wei Zhao Habaxi Kaken Deli Wang Yongsheng Liu Zhen Tan Li Wang Changchun Zhou 《Bio-Design and Manufacturing》 2026年第1期94-99,I0017,共7页
Cases of widespread bone hydatid infection are relatively rare in clinical practice.In this study,we reported for the first time a validated integrated repair therapy for multiple bone tissues,including the hip,femur,... Cases of widespread bone hydatid infection are relatively rare in clinical practice.In this study,we reported for the first time a validated integrated repair therapy for multiple bone tissues,including the hip,femur,and knee,caused by echinococ cosis.Artificial intelligence(AI)was used to develop a targeted surgical plan and to design a personalized prosthesis.Finite element analysis(FEA)was used to optimize the mechanical effectiveness of a customized integrated replacement prosthesis and to model stress distribution in the surrounding bone.Three-dimensional(3 D)printing was used to fabricate a customized prosthesis.With the assistance of AI,FEA,and 3 D printing technology,a personalized surgical plan and customized prosthesis were successfully constructed based on the patient’s disease.This approach achieved a successful therapeutic effect,demonstrating that AI-assisted personalized medicine holds great promise for the future. 展开更多
关键词 develop targeted surgical plan optimize mechanical effectiveness AI assisted design D printed prosthesis design personalized prosthesisfinite element analysis fea bone tissuesincluding bone hydatid infection integrated repair therapy
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A variationally consistent nodal integration for cubic serendipity finite elements with optimal convergence in explicit transient heat conduction analysis
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作者 Songyang Hou Zhiwei Lin +1 位作者 Zhenyu Wu Dongdong Wang 《Theoretical & Applied Mechanics Letters》 2025年第6期597-609,共13页
The 13-node quadrilateral and 39-node hexahedral cubic serendipity elements produce nodally integrated positive-definite lumped heat capacity matrices in higher-order finite element analysis.However,these elements dis... The 13-node quadrilateral and 39-node hexahedral cubic serendipity elements produce nodally integrated positive-definite lumped heat capacity matrices in higher-order finite element analysis.However,these elements display severe convergence deterioration in explicit transient heat conduction analysis with lumped heat ca-pacity matrices.This convergence decay is due to the violation of variational integration consistency by the standard Galerkin formulation with lumped heat capacity matrices.This issue is resolved by introducing the boundary-enhanced Galerkin weak form that incorporates the elemental boundary contribution in the discrete finite element formulation.Subsequently,it is theoretically proven that a direct nodal integration identically fulfills the variational integration consistency in the context of the boundary-enhanced Galerkin weak form.The proposed variationally consistent nodal integration therefore enables optimal convergence for explicit transient heat conduction analysis with lumped heat capacity matrices.The efficacy of the proposed variationally con-sistent nodal integration formulation for the 13-node quadrilateral and 39-node hexahedral cubic elements is thoroughly demonstrated via numerical examples. 展开更多
关键词 Cubic serendipity element Heat conduction analysis Nodal integration Lumped heat capacity matrix Variational integration consistency Optimal convergence
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Structural Reliability Analysis Method Based on Kriging and Spherical Cap Area Integral
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作者 ZHANG Jixiang CHEN Zhenzhong +3 位作者 CHEN Ge LI Xiaoke ZHAO Pengcheng PAN Qianghua 《Journal of Donghua University(English Edition)》 2025年第4期409-416,共8页
In the structural reliability analysis,the first-order reliability method(FORM)often yields significant errors when addressing nonlinear problems.Although the second-order reliability method(SORM)can provide higher ac... In the structural reliability analysis,the first-order reliability method(FORM)often yields significant errors when addressing nonlinear problems.Although the second-order reliability method(SORM)can provide higher accuracy,the additional computation of the Hessian matrix leads to lower computational efficiency.Additionally,when the dimensionality of the random variables is high,the approximation formula of SORM can result in larger errors.To address these issues,a structural reliability analysis method based on Kriging and spherical cap area integral is proposed.Firstly,this method integrates FORM with the quasi-Newton algorithm Broyden-Fletcher-Goldfarb-Shanno(BFGS),trains the Kriging model by using sample points from the algorithm’s iteration process,and combines the Kriging model with gradient information to approximate the Hessian matrix.Then,the failure surface is approximated as a rotating paraboloid,utilizing the spherical cap to replace the complex surface.For the n-dimensional case,the hyperspherical cap area expression is combined with the integral method to calculate the failure probability.Finally,the method is validated through three examples,demonstrating improved computational accuracy and efficiency compared to traditional methods. 展开更多
关键词 structural reliability analysis quasi-Newton algorithm Kriging model spherical cap area integral
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Integrated Design and Accuracy Analysis of Star Sensor and Gyro on the Same Benchmark for Satellite Attitude Determination System 被引量:4
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作者 Bowen Hou Zhangming He +1 位作者 Haiyin Zhou Jiongqi Wang 《IEEE/CAA Journal of Automatica Sinica》 SCIE EI CSCD 2019年第4期1074-1080,共7页
As an important sensor in the navigation systems,star sensors and the gyro play important roles in spacecraft attitude determination system.Complex environmental factors are the main sources of error in attitude deter... As an important sensor in the navigation systems,star sensors and the gyro play important roles in spacecraft attitude determination system.Complex environmental factors are the main sources of error in attitude determination.The error influence of different benchmarks and the disintegration mode between the star sensor and the gyro is analyzed in theory.The integrated design of the star sensor and the gyro on the same benchmark can effectively avoid the error influence and improves the spacecraft attitude determination accuracy.Simulation results indicate that when the stars sensor optical axis vectors overlap the reference coordinate axis of the gyro in the same benchmark,the attitude determination accuracy improves. 展开更多
关键词 ACCURACY analysis ATTITUDE determination GYRO integrated design SAME BENCHMARK STAR sensor
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INTEGRATED ANALYSIS APPROACHES TO ROCK MECHANICS PROBLEMS 被引量:8
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作者 Hudson J A 《岩石力学与工程学报》 EI CAS CSCD 北大核心 2002年第11期1702-1707,共6页
In order to effectively cope with exponent increase of the complexity faced to the rock mechanics analysis problems and the large incompatibility existing between the information level required to model the rock mass ... In order to effectively cope with exponent increase of the complexity faced to the rock mechanics analysis problems and the large incompatibility existing between the information level required to model the rock mass and engineering and our obtainable information level at hand,the integrated approaches with intelligent characters are proposed. Many previous standard methods,such as precedent type analysis,rock classification,analytic method stress-based,basic numerical methods (BEM,FEM,DEM,hybrid),and their extended numerical methods (fully coupled) to be developed,can be selected respectively or integrated accordingly. It is alternative to develop basic/fully integrated system,and internet-based approaches. These novel methods can also be selected or integrated each other or with the standard methods to perform rock mechanics analysis. Some key techniques to develop these alternative methods are discussed. It may focus in future on developing fully integrated systems and internet-based approaches. Developing an environmental,virtual facility/space shall be firstly done for this collaborative research on internet. 展开更多
关键词 rock mechanics analysis integrated approach expert system rock engineering system neural network numerical method coupled modeling Internet-based approaches
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Technology-Driven and Evidence-Based Genomic Analysis for Integrated Pediatric and Prenatal Genetics Evaluation 被引量:4
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作者 Yuan Wei Fang Xu Peining Li 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2013年第1期1-14,共14页
The first decade since the completion of the Human Genome Project has been marked with rapid development of genomic technologies and their immediate clinical applications. Genomic analysis using oligonucleotide array ... The first decade since the completion of the Human Genome Project has been marked with rapid development of genomic technologies and their immediate clinical applications. Genomic analysis using oligonucleotide array comparative genomic hybridization (aCGH) or single nucleotide polymorphism (SNP) chips has been applied to pediatric patients with developmental and intellectual disabilities (DD/ ID), multiple congenital anomalies (MCA) and autistic spectrum disorders (ASD). Evaluation of analytical and clinical validities of aCGH showed 〉 99% sensitivity and specificity and increased analytical resolution by higher density probe coverage. Reviews of case series, multi-center comparison and large patient-control studies demonstrated a diagnostic yield of 12%--20%; approximately 60% of these abnormalities were recurrent genomic disorders. This pediatric experience has been extended toward prenatal diagnosis. A series of reports indicated approximately 10% of pregnancies with ultrasound-detected structural anomalies and normal cytogenetic findings had genomic abnormalities, and 30% of these abnormalities were syndromic genomic disorders. Evidence-based practice guidelines and standards for implementing genomic analysis and web-delivered knowledge resources for interpreting genomic findings have been established. The progress from this technology-driven and evidence-based genomic analysis provides not only opportunities to dissect disease-causing mechanisms and develop rational therapeutic interventions but also important lessons for integrating genomic sequencing into pediatric and prenatal genetic evaluation. 展开更多
关键词 Genomic analysis Analytical and clinical validity Evidence-based standards and guidelines integrated genetic evaluation
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A process-level hierarchical structural decomposition analysis (SDA) of energy consumption in an integrated steel plant 被引量:3
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作者 刘骁浚 廖胜明 +1 位作者 饶政华 刘刚 《Journal of Central South University》 SCIE EI CAS CSCD 2017年第2期402-412,共11页
A hierarchical structural decomposition analysis(SDA) model has been developed based on process-level input-output(I-O) tables to analyze the drivers of energy consumption changes in an integrated steel plant during 2... A hierarchical structural decomposition analysis(SDA) model has been developed based on process-level input-output(I-O) tables to analyze the drivers of energy consumption changes in an integrated steel plant during 2011-2013. By combining the principle of hierarchical decomposition into D&L method, a hierarchical decomposition model for multilevel SDA is obtained. The developed hierarchical IO-SDA model would provide consistent results and need less computation effort compared with the traditional SDA model. The decomposition results of the steel plant suggest that the technology improvement and reduced steel final demand are two major reasons for declined total energy consumption. The technical improvements of blast furnaces, basic oxygen furnaces, the power plant and the by-products utilization level have contributed mostly in reducing energy consumption. A major retrofit of ancillary process units and solving fuel substitution problem in the sinter plant and blast furnace are important for further energy saving. Besides the empirical results, this work also discussed that why and how hierarchical SDA can be applied in a process-level decomposition analysis of aggregated indicators. 展开更多
关键词 structural decomposition analysis input-output table energy consumption embodied energy integrated steel plant
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SWOT Analysis and Challenges of Nile Basin Initiative:An Integrated Water Resource Management Perspective 被引量:4
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作者 Alebel Abebe Belay Henry Musoke Semakula +1 位作者 George James Wambura Labohy Jan 《Chinese Journal of Population,Resources and Environment》 2010年第1期8-17,共10页
River Nile is one of the longest transboundery rivers and it is shared and used by Burundi,Democratic Republic of Congo,Egypt,Ethiopia,Eritrea,Kenya,Rwanda,Sudan,Tanzania and Uganda.As of today,the Nile is a crucial r... River Nile is one of the longest transboundery rivers and it is shared and used by Burundi,Democratic Republic of Congo,Egypt,Ethiopia,Eritrea,Kenya,Rwanda,Sudan,Tanzania and Uganda.As of today,the Nile is a crucial resource for the economic development of the Nile Basin countries and a vital source of livelihood for 160 million inhabitants as well as 300 million people living in the 10 riparian countries.The Nile Basin Initiative(NBI) is one of the international cooperative river basin management program and regional partnership where all the Nile Basin countries except Eritrea unite to pursue long-term sustainable development,improved land use practices and management.This review therefore focused on the challenges not faced on NBI in terms of integrated use of the river and conducted analysis of strengths,weaknesses,opportunities and threats(SWOT) based on secondary data.The result of the review revealed that for decades,the Nile Basin people have been facing many complex environmental,social,economic and political challenges that have made it difficult for the proper management and sustainability of Nile water.The initiative provides training to develop skills in government ministries,non-governmental organizations and local communities in each country.It is also working to raise awareness of critical environmental issues by strengthening networks of environmental education practitioners;developing curriculum in the education sector.The challenges of NBI include the involvement and funding of World Bank,lack of sufficient staff,procedural and policies conflicts,lack of coordination and linkage with other regional institutions and lack of recognition as river basin organization.Considering the complex nature of the project,it is recommended that the NBI should come up with a strong multi-disciplinary monitoring and evaluation team to follow up all implemented projects.The NBI should carry out participatory land use planning in communities along the river basin.Moreover,livelihood analysis should be carried out especially in communities along the Nile to come up with poverty eradication projects which are socially acceptable,applicable,economically viable and affordable. 展开更多
关键词 river basin management Nile Basin Initiative SWOT analysis integrated water management River Nile
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Identification of metastasis-associated genes in colorectal cancer through an integrated genomic and transcriptomic analysis 被引量:2
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作者 Xiaobo Li Sihua Peng 《Chinese Journal of Cancer Research》 SCIE CAS CSCD 2013年第6期623-636,共14页
Objective: Identification of colorectal cancer (CRC) metastasis genes is one of the most important issues in CRC research. For the purpose of mining CRC metastasis-associated genes, an integrated analysis of mJcroa... Objective: Identification of colorectal cancer (CRC) metastasis genes is one of the most important issues in CRC research. For the purpose of mining CRC metastasis-associated genes, an integrated analysis of mJcroarray data was presented, by combined with evidence acquired from comparative genornic hybridization (CGH) data. Methods: Gene expression profile data of CRC samples were obtained at Gene Expression Omnibus (GEO) website. The 15 important chromosomal aberration sites detected by using CGH technology were used for integrated genomic and transcriptomic analysis. Significant Analysis of Microarray (SAM) was used to detect significantly differentially expressed genes across the whole genome. The overlapping genes were selected in their corresponding chromosomal aberration regions, and analyzed by using the Database for Annotation, Visualization and Integrated Discovery (DAVID). Finally, SVM-T-RFE gene selection algorithm was applied to identify ted genes in CRC. Results: A minimum gene set was obtained with the minimum number [14] of genes, and the highest classification accuracy (100%) in both PRI and META datasets. A fraction of selected genes are associated with CRC or its metastasis. Conclusions- Our results demonstrated that integration analysis is an effective strategy for mining cancer- associated genes. 展开更多
关键词 Colorectal cancer metastasis integrated analysis comparative genomic hybridization (CGH) Significant analysis of Microarray (SAM) Database for Annotation Visualization and integrated Discovery(DAVID) SVM-T-RFE gene selection algorithm
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Time series analysis-based seasonal autoregressive fractionally integrated moving average to estimate hepatitis B and C epidemics in China 被引量:4
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作者 Yong-Bin Wang Si-Yu Qing +3 位作者 Zi-Yue Liang Chang Ma Yi-Chun Bai Chun-Jie Xu 《World Journal of Gastroenterology》 SCIE CAS 2023年第42期5716-5727,共12页
BACKGROUND Hepatitis B(HB)and hepatitis C(HC)place the largest burden in China,and a goal of eliminating them as a major public health threat by 2030 has been set.Making more informed and accurate forecasts of their s... BACKGROUND Hepatitis B(HB)and hepatitis C(HC)place the largest burden in China,and a goal of eliminating them as a major public health threat by 2030 has been set.Making more informed and accurate forecasts of their spread is essential for developing effective strategies,heightening the requirement for early warning to deal with such a major public health threat.AIM To monitor HB and HC epidemics by the design of a paradigmatic seasonal autoregressive fractionally integrated moving average(SARFIMA)for projections into 2030,and to compare the effectiveness with the seasonal autoregressive integrated moving average(SARIMA).METHODS Monthly HB and HC incidence cases in China were obtained from January 2004 to June 2023.Descriptive analysis and the Hodrick-Prescott method were employed to identify trends and seasonality.Two periods(from January 2004 to June 2022 and from January 2004 to December 2015,respectively)were used as the training sets to develop both models,while the remaining periods served as the test sets to evaluate the forecasting accuracy.RESULTS There were incidents of 23400874 HB cases and 3590867 HC cases from January 2004 to June 2023.Overall,HB remained steady[average annual percentage change(AAPC)=0.44,95%confidence interval(95%CI):-0.94-1.84]while HC was increasing(AAPC=8.91,95%CI:6.98-10.88),and both had a peak in March and a trough in February.In the 12-step-ahead HB forecast,the mean absolute deviation(15211.94),root mean square error(18762.94),mean absolute percentage error(0.17),mean error rate(0.15),and root mean square percentage error(0.25)under the best SARFIMA(3,0,0)(0,0.449,2)12 were smaller than those under the best SARIMA(3,0,0)(0,1,2)12(16867.71,20775.12,0.19,0.17,and 0.27,respectively).Similar results were also observed for the 90-step-ahead HB,12-step-ahead HC,and 90-step-ahead HC forecasts.The predicted HB incidents totaled 9865400(95%CI:7508093-12222709)cases and HC totaled 1659485(95%CI:856681-2462290)cases during 2023-2030.CONCLUSION Under current interventions,China faces enormous challenges to eliminate HB and HC epidemics by 2030,and effective strategies must be reinforced.The integration of SARFIMA into public health for the management of HB and HC epidemics can potentially result in more informed and efficient interventions,surpassing the capabilities of SARIMA. 展开更多
关键词 HEPATITIS Seasonal autoregressive fractionally integrated moving average Seasonal autoregressive integrated moving average Prediction EPIDEMIC Time series analysis
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A Proportional Integral Controller-Enhanced Non-Negative Latent Factor Analysis Model
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作者 Ye Yuan Siyang Lu Xin Luo 《IEEE/CAA Journal of Automatica Sinica》 2025年第6期1246-1259,共14页
A non-negative latent factor(NLF)model is able to be built efficiently via a single latent factor-dependent,non-negative and multiplicative update(SLF-NMU)algorithm for performing precise representation to high-dimens... A non-negative latent factor(NLF)model is able to be built efficiently via a single latent factor-dependent,non-negative and multiplicative update(SLF-NMU)algorithm for performing precise representation to high-dimensional and incomplete(HDI)matrix from many kinds of big-data-related applications.However,an SLF-NMU algorithm updates a latent factor relying on the current update increment only without considering past learning information,making a resultant model suffer from slow convergence.To address this issue,this study proposes a proportional integral(PI)controller-enhanced NLF(PI-NLF)model with two-fold ideas:1)Designing an increment refinement(IR)mechanism,which formulates the current and past update increments as the proportional and integral terms of a PI controller,thereby assimilating the past update information into the learning scheme smoothly with high efficiency;2)Deriving an IR-based SLF-NMU(ISN)algorithm,which updates a latent factor following the principle of an IR mechanism,thus significantly accelerating an NLF model's convergence rate.The simulation results on eight HDI matrices collected by real applications validate that a PI-NLF model outstrips several leading-edge models in both computational efficiency and accuracy when estimating missing data within an HDI matrix.The proposed PI-NLF model can be effectively applied to applications involving HDI matrix like e-commerce system,social network,and cloud service system.The code is available at https://github.com/yuanyeswu/PINLF/blob/mainIPINLF-code.zip. 展开更多
关键词 High-dimensional and incomplete(HDI)data learning algorithm non-negative latent factor(NLF)analysis proportional integral(PI)controller
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Multiple exosome RNA analysis methods for lung cancer diagnosis through integrated on-chip microfluidic system 被引量:2
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作者 Yunxing Lu Zhaoduo Tong +6 位作者 Zhenhua Wu Xiaoyu Jian Lin Zhou Shihui Qiu Chuanjie Shen Hao Yin Hongju Mao 《Chinese Chemical Letters》 SCIE CAS CSCD 2022年第6期3188-3192,共5页
Exosomes are now raising focus as a prospective biomarker for cancer diagnostics and prognosis owing to its unique bio-origin and composition.Exosomes take part in cellular communication and receptor mediation and tra... Exosomes are now raising focus as a prospective biomarker for cancer diagnostics and prognosis owing to its unique bio-origin and composition.Exosomes take part in cellular communication and receptor mediation and transfer their cargos(e.g.,proteins,m RNA and DNA).Quantitative analysis of tumor-related nucleic acid mutations can be a potential method to cancer diagnosis and prognosis in early stages.Here we present an integrated microfluidic system for exosome on-chip isolation and lung cancer RNA analysis through droplet digital PCR(dd PCR).Gradient dilution experiments show great linearity over a large concentration range with R^(2)=0.9998.Utilizing the system,four cell lines and two mutation targets were parallelly detected for mutation analysis.The experiments demonstrated mutation heterogeneity and the results were agree with cell researches.These results proved our integrated microfluidic system as a promising means for early cancer diagnosis and prognosis in the era of liquid biopsy. 展开更多
关键词 EXOSOME integrated processing RNA analysis MICROFLUIDICS Droplet digital PCR
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