Unlike the detection of marked on-street parking spaces,detecting unmarked spaces poses significant challenges due to the absence of clear physical demarcation and uneven gaps caused by irregular parking.In urban citi...Unlike the detection of marked on-street parking spaces,detecting unmarked spaces poses significant challenges due to the absence of clear physical demarcation and uneven gaps caused by irregular parking.In urban cities with heavy traffic flow,these challenges can result in traffic disruptions,rear-end collisions,sideswipes,and congestion as drivers struggle to make decisions.We propose a real-time detection system for on-street parking spaces using YOLO models and recommend the most suitable space based on KD-tree search.Lightweight versions of YOLOv5,YOLOv7-tiny,and YOLOv8 with different architectures are trained.Among the models,YOLOv5s with SPPF at the backbone achieved an F1-score of 0.89,which was selected for validation using k-fold cross-validation on our dataset.The Low variance and standard deviation recorded across folds indicate the model’s generalizability,reliability,and stability.Inference with KD-tree using predictions from the YOLO models recorded FPS of 37.9 for YOLOv5,67.2 for YOLOv7-tiny,and 67.0 for YOLOv8.The models successfully detect both marked and unmarked empty parking spaces on test data with varying inference speeds and FPS.These models can be efficiently deployed for real-time applications due to their high FPS,inference speed,and lightweight nature.In comparison with other state-of-the-art models,our models outperform them,further demonstrating their effectiveness.展开更多
Volume models for the long-term management of Okomu National Park in Nigeria are not available. The main challenge in assessing forest resources is the lack of accurate, species-specific baseline data and updated info...Volume models for the long-term management of Okomu National Park in Nigeria are not available. The main challenge in assessing forest resources is the lack of accurate, species-specific baseline data and updated information on volume models, growth rates, and disturbances. This complicates the development of effective management plans. This study addresses this by modelling tree volume using temporary sample plots laid out using a systematic line transect method Data was collected from 16 40 m × 50 m plots using a Spiegel relascope. DBH, top, middle, and base diameters, and overall height were measured for trees ≤ 10 cm DBH. Newton’s formula calculated volume of each tree, and per hectare estimates generated. The results showed an average of 132 trees per hectare. Population densities of individual species ranged from 1–11/ha, indicating a low density. Strombosia pustulata was the most abundant species. For coefficients that form the basis for species grouping, species-specific volume equations were developed and grouped into three clusters. Regression equations were fitted and selected based on specific statistical metrics. The volume models showed that generalized (V_(i)=b_(0)+b_(1)(D_(i)^(2)H_(i))+ε_(i)) functions, based on the statistical metrics, performed more effectively. The generalized functions exhibited superior performance, evidenced by the uniform residual plot distribution for DBH^(2)H, implying consistent experimental error and adherence to regression assumptions. A t-test at 95% confidence showed that the discrepancy between predicted and actual values was insignificant. This study indicates that the prediction models provide effective management tools for climate mitigation and determining carbon sequestration by a tropical forest.展开更多
Biological invasions,driven mainly by human activities,pose significant threats to global ecosystems and economies,with fungi and fungal-like oomycetes playing a pivotal role.Ink disease,caused by Phytophthora cinnamo...Biological invasions,driven mainly by human activities,pose significant threats to global ecosystems and economies,with fungi and fungal-like oomycetes playing a pivotal role.Ink disease,caused by Phytophthora cinnamomi and P.×cambivora,is a growing concern for sweet chestnut stands(Castanea sativa)in Europe.Since both pathogens are thermophilic organisms,ongoing climate change will likely exacerbate their impact.In this study,we applied species distribution modeling techniques to identify poten-tial substitutive species for sweet chestnut in the light of future climate scenarios SSP126 and SSP370 in southern Switzerland.Using the presence-only machine learning algorithm MaxEnt and leveraging occurrence data from the global dataset GBIF,we delineated the current and projected(2070-2100)distribution of 28 tree species.Several exotic species emerged as valuable alternatives to sweet chestnut,although careful consideration of all potential ecological consequences is required.We also identified several native tree species as promising substitutes,offering ecological benefits and potential adaptability to climatic conditions.Since species diversification fosters forest resilience,we also determined communities of alternative species that can be grown together.Our findings represent a valuable deci-sion tool for forest managers confronted with the challenges posed by ink disease and climate change.Given that,even in absence of disease,sweet chestnut is not a future-proof tree species in the study region,the identified species could offer a pathway toward resilient and sustainable forests within the entire chestnut belt.展开更多
The complex behaviors of expansive soils,particularly their volumetric changes driven by moisture variations,pose significant challenges in urban geotechnical engineering.Although vegetation-induced moisture changes a...The complex behaviors of expansive soils,particularly their volumetric changes driven by moisture variations,pose significant challenges in urban geotechnical engineering.Although vegetation-induced moisture changes are known to affect ground movement,quantitative characterization of tree–soil interactions remains limited due to insufficient field data and unclear relationships between tree water uptake and soil response.This study investigates the mechanical behavior of expansive clay soils influenced by two Lophostemon confertus samples during a 14-month field monitoring program in Melbourne,Australia.The research methodology integrates measurements of soil displacement,total soil suction,moisture content,and tree water consumption through instrumentation and monitoring systems.Field measurements suggest that tree roots reached the limits of their water extraction capacity when total soil suction exceeded 2880 kPa within the active root zone.The spatial extent of tree-induced soil desiccation reached 0.6–0.7 times the tree height laterally and penetrated to depths of 2.5–3.3 m vertically.The mature sample,with an 86%greater crown area and a threefold larger sapwood area,exhibited 142%higher water consumption(35 kL),demonstrating the scalability of tree–soil interaction mechanisms.A multiple linear regression model was developed to quantify the coupled relationships between soil movement and key variables,achieving a high adjusted R2 value of 0.97,which provides engineers and practitioners with a practical tool for estimating ground movement near trees.These findings offer valuable insights for infrastructure design in tree-adjacent environments and can inform computational models and design codes to enable more accurate site assessments and sustainable urban development.展开更多
Following the publication of Zeng et al.(2023),an inadvertent error was recently identified in Figure 1B and Supplementary Figure S3.To ensure the accuracy and integrity of our published work,we formally request a cor...Following the publication of Zeng et al.(2023),an inadvertent error was recently identified in Figure 1B and Supplementary Figure S3.To ensure the accuracy and integrity of our published work,we formally request a correction to address this issue and apologize for any confusion this error may have caused.For details,please refer to the modified Supplementary Materials.展开更多
Background 3D botanical tree reconstruction from a single image plays a vital role in the field of computer graphics.However,accurately capturing the intricate branching patterns and detailed morphologies of trees rem...Background 3D botanical tree reconstruction from a single image plays a vital role in the field of computer graphics.However,accurately capturing the intricate branching patterns and detailed morphologies of trees remains a challenge.Methods In this study,we proposed a novel approach for single-image tree reconstruction using a conditional generative adversarial network to infer the 3D skeleton of a tree in the form of a 2D skeleton depth map.Based on the 2D skeleton depth map,a corresponding branching structure(3D skeleton)that inherits the tree shape in the input image and leaves can be generated using a procedural modeling technique.Result Experimental results show that the proposed method accurately reconstructs diverse tree structures across species.Both quantitative and qualitative evaluations demonstrate improved skeleton completeness,branching accuracy,and visual realism over baseline methods,while requiring no user input.Conclusions Our proposed approach for generating lifelike 3D tree models from a single image with no user input shows its proficiency in achieving efficient and reliable reconstruction.These results showcase the capability of the proposed model to recreate complex tree architectures while capturing their visual authenticity.展开更多
Allometric equations are fundamental tools in ecological research and forestry management,widely used for estimating above-ground biomass and production,serving as the core foundations of dynamic vegetation models.Usi...Allometric equations are fundamental tools in ecological research and forestry management,widely used for estimating above-ground biomass and production,serving as the core foundations of dynamic vegetation models.Using global datasets from Tallo(a tree allometry and crown architecture database encompassing thousands of species)and TRY(a plant traits database),we fit B ayesian hierarchical models with three alternative functional forms(powerlaw,generalized Michaelis-Menten(gMM),and Weibull)to characterize how diameter at breast height(DBH),tree height(H),and crown radius(CR)scale with and without wood density as a species-level predictor.Our analysis revealed that the saturating Weibull function best captured the relationship between tree height and DBH in both functional groups,whereas the CR-DBH relationship was best predicted by a power-law function in angiosperms and by the gMM function in gymnosperms.Although including wood density did not significantly improve predictive performance,it revealed important ecological trade-offs:lighter-wood angiosperms achieve taller mature heights more rapidly,and denser wood promotes wider crown expansion across clades.We also found that accurately estimating DBH required considering both height and crown size,highlighting how these variables together distinguish trees of similar height but differing trunk diameters.Our results emphasize the importance of applying saturating functions for large trees to improve forest biomass estimates and show that wood density,though not always predictive at broad scales,helps illuminate the biomechanical and ecological constraints underlying diverse tree architectures.These findings offer practical pathways for integrating height-and crown-based metrics into existing carbon monitoring programs worldwide.展开更多
The optimum models of harvesting yield and net profits of large diameter trees for broadleaved forest were developed, of which include matrix growth sub-model, harvesting cost and wood price sub-models, based on the d...The optimum models of harvesting yield and net profits of large diameter trees for broadleaved forest were developed, of which include matrix growth sub-model, harvesting cost and wood price sub-models, based on the data from Hongshi Forestry Bureau, in Changbai Mountain region, Jilin Province, China. The data were measured in 232 permanent sample plots. With the data of permanent sample plots, the parameters of transition probability and ingrowth models were estimated, and some models were compared and partly modified. During the simulation of stand structure, four factors such as largest diameter residual tree （LDT）, the ratio of the number of trees in a given diameter class to those in the next larger diameter class （q）, residual basal area （RBA） and selective cutting cycle （C） were considered. The simulation results showed that the optimum stand structure parameters for large diameter trees are as follows： q is 1.2, LDT is 46cm, RBA is larger than 26 m^2 and selective cutting cycle time （C） is between 10 and 20 years.展开更多
The tree shrew （Tupaia belangeri） is a promising laboratory animal that possesses a closer genetic relationship to primates than to rodents. In addition, advantages such as small size, easy breeding, and rapid repro...The tree shrew （Tupaia belangeri） is a promising laboratory animal that possesses a closer genetic relationship to primates than to rodents. In addition, advantages such as small size, easy breeding, and rapid reproduction make the tree shrew an ideal subject for the study of human disease. Numerous tree shrew disease models have been generated in biological and medical studies in recent years. Here we summarize current tree shrew disease models, including models of infectious diseases, cancers, depressive disorders, drug addiction, myopia, metabolic diseases, and immune-related diseases. With the success of tree shrew transgenic technology, this species will be increasingly used in biological and medical studies in the future.展开更多
The Chinese tree shrew （Tupaia belangeri chinensis） a squirrel-like and rat-sized mammal, has a wide distribution in Southeast Asia, South and Southwest China and has many unique characteristics that make it suitabl...The Chinese tree shrew （Tupaia belangeri chinensis） a squirrel-like and rat-sized mammal, has a wide distribution in Southeast Asia, South and Southwest China and has many unique characteristics that make it suitable for use as an experimental animal. There have been many studies using the tree shrew （Tupaia belangeri） aimed at increasing our understanding of fundamental biological mechanisms and for the modeling of human diseases and therapeutic responses. The recent release of a publicly available annotated genome sequence of the Chinese tree shrew and its genome database （www.treeshrewdb.org） has offered a solid base from which it is possible to elucidate the basic biological properties and create animal models using this species. The extensive characterization of key factors and signaling pathways in the immune and nervous systems has shown that tree shrews possess both conserved and unique features relative to primates. Hitherto, the tree shrew has been successfully used to create animal models for myopia, depression, breast cancer, alcohol-induced or non-alcoholic fatty liver diseases, herpes simplex virus type 1 （HSV-1） and hepatitis C virus （HCV） infections, to name a few. The recent successful genetic manipulation of the tree shrew has opened a new avenue for the wider usage of this animal in biomedical research. In this opinion paper, I attempt to summarize the recent research advances that have used the Chinese tree shrew, with a focus on the new knowledge obtained by using the biological properties identified using the tree shrew genome, a proposal for the genome-based approach for creating animal models, and the genetic manipulation of the tree shrew. With more studies using this species and the application of cutting-edge gene editing techniques, the tree shrew will continue to be under the spot light as a viable animal model for investigating the basis of many different human diseases.展开更多
This work was to generate landslide susceptibility maps for the Three Gorges Reservoir(TGR) area, China by using different machine learning models. Three advanced machine learning methods, namely, gradient boosting de...This work was to generate landslide susceptibility maps for the Three Gorges Reservoir(TGR) area, China by using different machine learning models. Three advanced machine learning methods, namely, gradient boosting decision tree(GBDT), random forest(RF) and information value(InV) models, were used, and the performances were assessed and compared. In total, 202 landslides were mapped by using a series of field surveys, aerial photographs, and reviews of historical and bibliographical data. Nine causative factors were then considered in landslide susceptibility map generation by using the GBDT, RF and InV models. All of the maps of the causative factors were resampled to a resolution of 28.5 m. Of the 486289 pixels in the area,28526 pixels were landslide pixels, and 457763 pixels were non-landslide pixels. Finally, landslide susceptibility maps were generated by using the three machine learning models, and their performances were assessed through receiver operating characteristic(ROC) curves, the sensitivity, specificity,overall accuracy(OA), and kappa coefficient(KAPPA). The results showed that the GBDT, RF and In V models in overall produced reasonable accurate landslide susceptibility maps. Among these three methods, the GBDT method outperforms the other two machine learning methods, which can provide strong technical support for producing landslide susceptibility maps in TGR.展开更多
Mathematical models have been widely employed for the simulation of growth dynamics of annual crops,thereby performing yield prediction,but not for fruit tree species such as jujube tree(Zizyphus jujuba).The objective...Mathematical models have been widely employed for the simulation of growth dynamics of annual crops,thereby performing yield prediction,but not for fruit tree species such as jujube tree(Zizyphus jujuba).The objectives of this study were to investigate the potential use of a modified WOFOST model for predicting jujube yield by introducing tree age as a key parameter.The model was established using data collected from dedicated field experiments performed in 2016-2018.Simulated growth dynamics of dry weights of leaves,stems,fruits,total biomass and leaf area index(LAI) agreed well with measured values,showing root mean square error(RMSE) values of 0.143,0.333,0.366,0.624 t ha^-1 and 0.19,and R2 values of 0.947,0.976,0.985,0.986 and 0.95,respectively.Simulated phenological development stages for emergence,anthesis and maturity were 2,3 and 3 days earlier than the observed values,respectively.In addition,in order to predict the yields of trees with different ages,the weight of new organs(initial buds and roots) in each growing season was introduced as the initial total dry weight(TDWI),which was calculated as averaged,fitted and optimized values of trees with the same age.The results showed the evolution of the simulated LAI and yields profiled in response to the changes in TDWI.The modelling performance was significantly improved when it considered TDWI integrated with tree age,showing good global(R2≥0.856,RMSE≤0.68 t ha^-1) and local accuracies(mean R2≥0.43,RMSE≤0.70 t ha^-1).Furthermore,the optimized TDWI exhibited the highest precision,with globally validated R2 of 0.891 and RMSE of 0.591 t ha^-1,and local mean R2 of 0.57 and RMSE of 0.66 t ha^-1,respectively.The proposed model was not only verified with the confidence to accurately predict yields of jujube,but it can also provide a fundamental strategy for simulating the growth of other fruit trees.展开更多
OBJECTIVE: To explore the features of Traditional Chinese Medicine(TCM) syndromes in male infertility using computer-based analyses.METHODS: Latent class analysis was used to analyze the TCM syndrome data from 813 pat...OBJECTIVE: To explore the features of Traditional Chinese Medicine(TCM) syndromes in male infertility using computer-based analyses.METHODS: Latent class analysis was used to analyze the TCM syndrome data from 813 patients with male infertility and establish a latent tree model.RESULTS: A latent tree model with a Bayesian information criterion score of-11 263 was created.This model revealed that the characteristics of basic TCM syndromes in patients with male infertility were kidney Yang deficiency, kidney Qi deficiency,spleen Yang deficiency, liver Qi stagnation, Qi stagnation and blood stasis, and dump-heat; moreover,most patients with male infertility had complex syndromes(spleen-kidney Yang deficiency and liver Qi stagnation) rather than simple single syndromes.CONCLUSION: The hidden tree model analysis revealed the objective and quantitative complex relationships between the TCM symptoms of male infertility, and obtained the quantification and objective evidence of TCM syndromes in male infertility.展开更多
Height–diameter relationships are essential elements of forest assessment and modeling efforts.In this work,two linear and eighteen nonlinear height–diameter equations were evaluated to find a local model for Orient...Height–diameter relationships are essential elements of forest assessment and modeling efforts.In this work,two linear and eighteen nonlinear height–diameter equations were evaluated to find a local model for Oriental beech（Fagus orientalis Lipsky） in the Hyrcanian Forest in Iran.The predictive performance of these models was first assessed by different evaluation criteria： adjusted R^2（R^2_（adj））,root mean square error（RMSE）,relative RMSE（%RMSE）,bias,and relative bias（%bias） criteria.The best model was selected for use as the base mixed-effects model.Random parameters for test plots were estimated with different tree selection options.Results show that the Chapman–Richards model had better predictive ability in terms of adj R^2（0.81）,RMSE（3.7 m）,%RMSE（12.9）,bias（0.8）,%Bias（2.79） than the other models.Furthermore,the calibration response,based on a selection of four trees from the sample plots,resulted in a reduction percentage for bias and RMSE of about 1.6–2.7%.Our results indicate that the calibrated model produced the most accurate results.展开更多
The mortality of trees across diameter class model is a useful tool for predicting changes in stand structure.Mortality data commonly contain a large fraction of zeros and general discrete models thus show more errors...The mortality of trees across diameter class model is a useful tool for predicting changes in stand structure.Mortality data commonly contain a large fraction of zeros and general discrete models thus show more errors.Based on the traditional Poisson model and the negative binomial model,different forms of zero-inflated and hurdle models were applied to spruce-fir mixed forests data to simulate the number of dead trees.By comparing the residuals and Vuong test statistics,the zero-inflated negative binomial model performed best.A random effect was added to improve the model accuracy;however,the mixed-effects zero-inflated model did not show increased advantages.According to the model principle,the zeroinflated negative binomial model was the most suitable,indicating that the"0"events in this study,mainly from the sample"0",i.e.,the zero mortality data,are largely due to the limitations of the experimental design and sample selection.These results also show that the number of dead trees in the diameter class is positively correlated with the number of trees in that class and the mean stand diameter,and inversely related to class size,and slope and aspect of the site.展开更多
A state/event fault tree(SEFT)is a modeling technique for describing the causal chains of events leading to failure in software-controlled complex systems.Such systems are ubiquitous in all areas of everyday life,and ...A state/event fault tree(SEFT)is a modeling technique for describing the causal chains of events leading to failure in software-controlled complex systems.Such systems are ubiquitous in all areas of everyday life,and safety and reliability analyses are increasingly required for these systems.SEFTs combine elements from the traditional fault tree with elements from state-based techniques.In the context of the real-time safety-critical systems,SEFTs do not describe the time properties and important timedependent system behaviors that can lead to system failures.Further,SEFTs lack the precise semantics required for formally modeling time behaviors.In this paper,we present a qualitative analysis method for SEFTs based on transformation from SEFT to timed automata(TA),and use the model checker UPPAAL to verify system requirements’properties.The combination of SEFT and TA is an important step towards an integrated design and verification process for real-time safety-critical systems.Finally,we present a case study of a powerboat autopilot system to confirm our method is viable and valid after achieving the verification goal step by step.展开更多
The tree shrew(Tupaia belangeri)has long been proposed as a suitable alternative to non-human primates(NHPs)in biomedical and laboratory research due to its close evolutionary relationship with primates.In recent year...The tree shrew(Tupaia belangeri)has long been proposed as a suitable alternative to non-human primates(NHPs)in biomedical and laboratory research due to its close evolutionary relationship with primates.In recent years,significant advances have facilitated tree shrew studies,including the determination of the tree shrew genome,genetic manipulation using spermatogonial stem cells,viral vector-mediated gene delivery,and mapping of the tree shrew brain atlas.However,the limited availability of tree shrews globally remains a substantial challenge in the field.Additionally,determining the key questions best answered using tree shrews constitutes another difficulty.Tree shrew models have historically been used to study hepatitis B virus(HBV)and hepatitis C virus(HCV)infection,myopia,and psychosocial stress-induced depression,with more recent studies focusing on developing animal models for infectious and neurodegenerative diseases.Despite these efforts,the impact of tree shrew models has not yet matched that of rodent or NHP models in biomedical research.This review summarizes the prominent advancements in tree shrew research and reflects on the key biological questions addressed using this model.We emphasize that intensive dedication and robust international collaboration are essential for achieving breakthroughs in tree shrew studies.The use of tree shrews as a unique resource is expected to gain considerable attention with the application of advanced techniques and the development of viable animal models,meeting the increasing demands of life science and biomedical research.展开更多
Liver transplantation (LT)is most effective and promising approach for end-stage liver disease.However,there remains room for further improvement and innovation,for example, to reduce ischemic reperfusion injury,trans...Liver transplantation (LT)is most effective and promising approach for end-stage liver disease.However,there remains room for further improvement and innovation,for example, to reduce ischemic reperfusion injury,transplant rejection and immune tolerance.A good animal model of LT is essential for such innovation in transplant research.Although rat LT model has been used since the last century,it has never been an ideal model because the results observed in rat may not be applied to human because these two species are genetically distinct from each other.In this study,we for the first time performed LT using the tree shrew (Tupaia belangeri),a species in the Order Scandentia which is closely related with primates,and evaluated the possibility to adopt this species as a new model of LT.We performed LT on 30 animals using the two-cuff technique, examining the success rate,the survival rate and the immunological reaction.The recipient operation time was 60 min averagely,and we limited the time of the anhepatic phase within 20 min.Twenty-seven (90%)of the animals survived for at least 3 days after the transplantation. Thirteen animals that did not receive any immunosuppressive drug died in 8 days mostly because of acute rejection effect (n=9),similar to the reaction in human but not in experimental rat.The rest 14 animals that were given rapamycin survived significantly longer (38 days)and half of them survived for 60 days until the end of the study.Our results suggest that performing LT in tree shrews can yield high success rate and high survival rate.More importantly,the tree shrews share similar immunological reaction with human.In addition,previous genomics study found that the tree shrews share more proteins with human.In sum,the tree shrews may outperform the experimental rats and could be used as a better and cost-effective animal model for LT.展开更多
基金supports this paper.Project Nos.NSTC-112-2221-E-324-003 MY3,NSTC-111-2622-E-324-002 and NSTC-112-2221-E-324-011-MY2.
文摘Unlike the detection of marked on-street parking spaces,detecting unmarked spaces poses significant challenges due to the absence of clear physical demarcation and uneven gaps caused by irregular parking.In urban cities with heavy traffic flow,these challenges can result in traffic disruptions,rear-end collisions,sideswipes,and congestion as drivers struggle to make decisions.We propose a real-time detection system for on-street parking spaces using YOLO models and recommend the most suitable space based on KD-tree search.Lightweight versions of YOLOv5,YOLOv7-tiny,and YOLOv8 with different architectures are trained.Among the models,YOLOv5s with SPPF at the backbone achieved an F1-score of 0.89,which was selected for validation using k-fold cross-validation on our dataset.The Low variance and standard deviation recorded across folds indicate the model’s generalizability,reliability,and stability.Inference with KD-tree using predictions from the YOLO models recorded FPS of 37.9 for YOLOv5,67.2 for YOLOv7-tiny,and 67.0 for YOLOv8.The models successfully detect both marked and unmarked empty parking spaces on test data with varying inference speeds and FPS.These models can be efficiently deployed for real-time applications due to their high FPS,inference speed,and lightweight nature.In comparison with other state-of-the-art models,our models outperform them,further demonstrating their effectiveness.
文摘Volume models for the long-term management of Okomu National Park in Nigeria are not available. The main challenge in assessing forest resources is the lack of accurate, species-specific baseline data and updated information on volume models, growth rates, and disturbances. This complicates the development of effective management plans. This study addresses this by modelling tree volume using temporary sample plots laid out using a systematic line transect method Data was collected from 16 40 m × 50 m plots using a Spiegel relascope. DBH, top, middle, and base diameters, and overall height were measured for trees ≤ 10 cm DBH. Newton’s formula calculated volume of each tree, and per hectare estimates generated. The results showed an average of 132 trees per hectare. Population densities of individual species ranged from 1–11/ha, indicating a low density. Strombosia pustulata was the most abundant species. For coefficients that form the basis for species grouping, species-specific volume equations were developed and grouped into three clusters. Regression equations were fitted and selected based on specific statistical metrics. The volume models showed that generalized (V_(i)=b_(0)+b_(1)(D_(i)^(2)H_(i))+ε_(i)) functions, based on the statistical metrics, performed more effectively. The generalized functions exhibited superior performance, evidenced by the uniform residual plot distribution for DBH^(2)H, implying consistent experimental error and adherence to regression assumptions. A t-test at 95% confidence showed that the discrepancy between predicted and actual values was insignificant. This study indicates that the prediction models provide effective management tools for climate mitigation and determining carbon sequestration by a tropical forest.
基金supported by the Pilot program“Adaptation to climate change”of the Swiss Federal Office for the Environment(FOEN,project E03)by the Interreg V A Italy Switzerland Cooperation Program 20142020(project MONGEFITOFOR).
文摘Biological invasions,driven mainly by human activities,pose significant threats to global ecosystems and economies,with fungi and fungal-like oomycetes playing a pivotal role.Ink disease,caused by Phytophthora cinnamomi and P.×cambivora,is a growing concern for sweet chestnut stands(Castanea sativa)in Europe.Since both pathogens are thermophilic organisms,ongoing climate change will likely exacerbate their impact.In this study,we applied species distribution modeling techniques to identify poten-tial substitutive species for sweet chestnut in the light of future climate scenarios SSP126 and SSP370 in southern Switzerland.Using the presence-only machine learning algorithm MaxEnt and leveraging occurrence data from the global dataset GBIF,we delineated the current and projected(2070-2100)distribution of 28 tree species.Several exotic species emerged as valuable alternatives to sweet chestnut,although careful consideration of all potential ecological consequences is required.We also identified several native tree species as promising substitutes,offering ecological benefits and potential adaptability to climatic conditions.Since species diversification fosters forest resilience,we also determined communities of alternative species that can be grown together.Our findings represent a valuable deci-sion tool for forest managers confronted with the challenges posed by ink disease and climate change.Given that,even in absence of disease,sweet chestnut is not a future-proof tree species in the study region,the identified species could offer a pathway toward resilient and sustainable forests within the entire chestnut belt.
基金funded by the Australian Research Council via the ARC Linkage(Grant No.LP16160100649).
文摘The complex behaviors of expansive soils,particularly their volumetric changes driven by moisture variations,pose significant challenges in urban geotechnical engineering.Although vegetation-induced moisture changes are known to affect ground movement,quantitative characterization of tree–soil interactions remains limited due to insufficient field data and unclear relationships between tree water uptake and soil response.This study investigates the mechanical behavior of expansive clay soils influenced by two Lophostemon confertus samples during a 14-month field monitoring program in Melbourne,Australia.The research methodology integrates measurements of soil displacement,total soil suction,moisture content,and tree water consumption through instrumentation and monitoring systems.Field measurements suggest that tree roots reached the limits of their water extraction capacity when total soil suction exceeded 2880 kPa within the active root zone.The spatial extent of tree-induced soil desiccation reached 0.6–0.7 times the tree height laterally and penetrated to depths of 2.5–3.3 m vertically.The mature sample,with an 86%greater crown area and a threefold larger sapwood area,exhibited 142%higher water consumption(35 kL),demonstrating the scalability of tree–soil interaction mechanisms.A multiple linear regression model was developed to quantify the coupled relationships between soil movement and key variables,achieving a high adjusted R2 value of 0.97,which provides engineers and practitioners with a practical tool for estimating ground movement near trees.These findings offer valuable insights for infrastructure design in tree-adjacent environments and can inform computational models and design codes to enable more accurate site assessments and sustainable urban development.
文摘Following the publication of Zeng et al.(2023),an inadvertent error was recently identified in Figure 1B and Supplementary Figure S3.To ensure the accuracy and integrity of our published work,we formally request a correction to address this issue and apologize for any confusion this error may have caused.For details,please refer to the modified Supplementary Materials.
文摘Background 3D botanical tree reconstruction from a single image plays a vital role in the field of computer graphics.However,accurately capturing the intricate branching patterns and detailed morphologies of trees remains a challenge.Methods In this study,we proposed a novel approach for single-image tree reconstruction using a conditional generative adversarial network to infer the 3D skeleton of a tree in the form of a 2D skeleton depth map.Based on the 2D skeleton depth map,a corresponding branching structure(3D skeleton)that inherits the tree shape in the input image and leaves can be generated using a procedural modeling technique.Result Experimental results show that the proposed method accurately reconstructs diverse tree structures across species.Both quantitative and qualitative evaluations demonstrate improved skeleton completeness,branching accuracy,and visual realism over baseline methods,while requiring no user input.Conclusions Our proposed approach for generating lifelike 3D tree models from a single image with no user input shows its proficiency in achieving efficient and reliable reconstruction.These results showcase the capability of the proposed model to recreate complex tree architectures while capturing their visual authenticity.
基金supported by the Xingdian Talent Support Program of Yunnan Province(E5YNR03B01)the Xishuangbanna State Rainforest Talent Support Program(E4BN041B01)the CAS President’s International Fellowship Initiative(2020FYB0003)。
文摘Allometric equations are fundamental tools in ecological research and forestry management,widely used for estimating above-ground biomass and production,serving as the core foundations of dynamic vegetation models.Using global datasets from Tallo(a tree allometry and crown architecture database encompassing thousands of species)and TRY(a plant traits database),we fit B ayesian hierarchical models with three alternative functional forms(powerlaw,generalized Michaelis-Menten(gMM),and Weibull)to characterize how diameter at breast height(DBH),tree height(H),and crown radius(CR)scale with and without wood density as a species-level predictor.Our analysis revealed that the saturating Weibull function best captured the relationship between tree height and DBH in both functional groups,whereas the CR-DBH relationship was best predicted by a power-law function in angiosperms and by the gMM function in gymnosperms.Although including wood density did not significantly improve predictive performance,it revealed important ecological trade-offs:lighter-wood angiosperms achieve taller mature heights more rapidly,and denser wood promotes wider crown expansion across clades.We also found that accurately estimating DBH required considering both height and crown size,highlighting how these variables together distinguish trees of similar height but differing trunk diameters.Our results emphasize the importance of applying saturating functions for large trees to improve forest biomass estimates and show that wood density,though not always predictive at broad scales,helps illuminate the biomechanical and ecological constraints underlying diverse tree architectures.These findings offer practical pathways for integrating height-and crown-based metrics into existing carbon monitoring programs worldwide.
基金This paper was supported by National Strategy Key Project, Research and Paradigm on Ecological Harvesting and Regeneration Tech-nique for Northeast Natural Forest (2001BA510B07-02)
文摘The optimum models of harvesting yield and net profits of large diameter trees for broadleaved forest were developed, of which include matrix growth sub-model, harvesting cost and wood price sub-models, based on the data from Hongshi Forestry Bureau, in Changbai Mountain region, Jilin Province, China. The data were measured in 232 permanent sample plots. With the data of permanent sample plots, the parameters of transition probability and ingrowth models were estimated, and some models were compared and partly modified. During the simulation of stand structure, four factors such as largest diameter residual tree （LDT）, the ratio of the number of trees in a given diameter class to those in the next larger diameter class （q）, residual basal area （RBA） and selective cutting cycle （C） were considered. The simulation results showed that the optimum stand structure parameters for large diameter trees are as follows： q is 1.2, LDT is 46cm, RBA is larger than 26 m^2 and selective cutting cycle time （C） is between 10 and 20 years.
基金supported by the National Nature Science Foundation of China(81325016,U1602221,81322038 and U1502222)
文摘The tree shrew （Tupaia belangeri） is a promising laboratory animal that possesses a closer genetic relationship to primates than to rodents. In addition, advantages such as small size, easy breeding, and rapid reproduction make the tree shrew an ideal subject for the study of human disease. Numerous tree shrew disease models have been generated in biological and medical studies in recent years. Here we summarize current tree shrew disease models, including models of infectious diseases, cancers, depressive disorders, drug addiction, myopia, metabolic diseases, and immune-related diseases. With the success of tree shrew transgenic technology, this species will be increasingly used in biological and medical studies in the future.
基金supported by the grant of the National Natural Science Foundation of China(NSFC U1402224)the Chinese Academy of Sciences(CAS zsys-02)
文摘The Chinese tree shrew （Tupaia belangeri chinensis） a squirrel-like and rat-sized mammal, has a wide distribution in Southeast Asia, South and Southwest China and has many unique characteristics that make it suitable for use as an experimental animal. There have been many studies using the tree shrew （Tupaia belangeri） aimed at increasing our understanding of fundamental biological mechanisms and for the modeling of human diseases and therapeutic responses. The recent release of a publicly available annotated genome sequence of the Chinese tree shrew and its genome database （www.treeshrewdb.org） has offered a solid base from which it is possible to elucidate the basic biological properties and create animal models using this species. The extensive characterization of key factors and signaling pathways in the immune and nervous systems has shown that tree shrews possess both conserved and unique features relative to primates. Hitherto, the tree shrew has been successfully used to create animal models for myopia, depression, breast cancer, alcohol-induced or non-alcoholic fatty liver diseases, herpes simplex virus type 1 （HSV-1） and hepatitis C virus （HCV） infections, to name a few. The recent successful genetic manipulation of the tree shrew has opened a new avenue for the wider usage of this animal in biomedical research. In this opinion paper, I attempt to summarize the recent research advances that have used the Chinese tree shrew, with a focus on the new knowledge obtained by using the biological properties identified using the tree shrew genome, a proposal for the genome-based approach for creating animal models, and the genetic manipulation of the tree shrew. With more studies using this species and the application of cutting-edge gene editing techniques, the tree shrew will continue to be under the spot light as a viable animal model for investigating the basis of many different human diseases.
基金This work was supported in part by the National Natural Science Foundation of China(61601418,41602362,61871259)in part by the Opening Foundation of Hunan Engineering and Research Center of Natural Resource Investigation and Monitoring(2020-5)+1 种基金in part by the Qilian Mountain National Park Research Center(Qinghai)(grant number:GKQ2019-01)in part by the Geomatics Technology and Application Key Laboratory of Qinghai Province,Grant No.QHDX-2019-01.
文摘This work was to generate landslide susceptibility maps for the Three Gorges Reservoir(TGR) area, China by using different machine learning models. Three advanced machine learning methods, namely, gradient boosting decision tree(GBDT), random forest(RF) and information value(InV) models, were used, and the performances were assessed and compared. In total, 202 landslides were mapped by using a series of field surveys, aerial photographs, and reviews of historical and bibliographical data. Nine causative factors were then considered in landslide susceptibility map generation by using the GBDT, RF and InV models. All of the maps of the causative factors were resampled to a resolution of 28.5 m. Of the 486289 pixels in the area,28526 pixels were landslide pixels, and 457763 pixels were non-landslide pixels. Finally, landslide susceptibility maps were generated by using the three machine learning models, and their performances were assessed through receiver operating characteristic(ROC) curves, the sensitivity, specificity,overall accuracy(OA), and kappa coefficient(KAPPA). The results showed that the GBDT, RF and In V models in overall produced reasonable accurate landslide susceptibility maps. Among these three methods, the GBDT method outperforms the other two machine learning methods, which can provide strong technical support for producing landslide susceptibility maps in TGR.
基金supported by the National Natural Science Foundation of China(41561088 and 61501314)the Science&Technology Nova Program of Xinjiang Production and Construction Corps,China(2018CB020)
文摘Mathematical models have been widely employed for the simulation of growth dynamics of annual crops,thereby performing yield prediction,but not for fruit tree species such as jujube tree(Zizyphus jujuba).The objectives of this study were to investigate the potential use of a modified WOFOST model for predicting jujube yield by introducing tree age as a key parameter.The model was established using data collected from dedicated field experiments performed in 2016-2018.Simulated growth dynamics of dry weights of leaves,stems,fruits,total biomass and leaf area index(LAI) agreed well with measured values,showing root mean square error(RMSE) values of 0.143,0.333,0.366,0.624 t ha^-1 and 0.19,and R2 values of 0.947,0.976,0.985,0.986 and 0.95,respectively.Simulated phenological development stages for emergence,anthesis and maturity were 2,3 and 3 days earlier than the observed values,respectively.In addition,in order to predict the yields of trees with different ages,the weight of new organs(initial buds and roots) in each growing season was introduced as the initial total dry weight(TDWI),which was calculated as averaged,fitted and optimized values of trees with the same age.The results showed the evolution of the simulated LAI and yields profiled in response to the changes in TDWI.The modelling performance was significantly improved when it considered TDWI integrated with tree age,showing good global(R2≥0.856,RMSE≤0.68 t ha^-1) and local accuracies(mean R2≥0.43,RMSE≤0.70 t ha^-1).Furthermore,the optimized TDWI exhibited the highest precision,with globally validated R2 of 0.891 and RMSE of 0.591 t ha^-1,and local mean R2 of 0.57 and RMSE of 0.66 t ha^-1,respectively.The proposed model was not only verified with the confidence to accurately predict yields of jujube,but it can also provide a fundamental strategy for simulating the growth of other fruit trees.
基金Supported by the Beijing University of Traditional Chinese Medicine Foundation(No.2015-JYB-JSMS099)the National Science Foundation of China(No.81473527)
文摘OBJECTIVE: To explore the features of Traditional Chinese Medicine(TCM) syndromes in male infertility using computer-based analyses.METHODS: Latent class analysis was used to analyze the TCM syndrome data from 813 patients with male infertility and establish a latent tree model.RESULTS: A latent tree model with a Bayesian information criterion score of-11 263 was created.This model revealed that the characteristics of basic TCM syndromes in patients with male infertility were kidney Yang deficiency, kidney Qi deficiency,spleen Yang deficiency, liver Qi stagnation, Qi stagnation and blood stasis, and dump-heat; moreover,most patients with male infertility had complex syndromes(spleen-kidney Yang deficiency and liver Qi stagnation) rather than simple single syndromes.CONCLUSION: The hidden tree model analysis revealed the objective and quantitative complex relationships between the TCM symptoms of male infertility, and obtained the quantification and objective evidence of TCM syndromes in male infertility.
基金This research received no specific grant from any funding agency in the public,commercial,or not-for-profit sectors
文摘Height–diameter relationships are essential elements of forest assessment and modeling efforts.In this work,two linear and eighteen nonlinear height–diameter equations were evaluated to find a local model for Oriental beech（Fagus orientalis Lipsky） in the Hyrcanian Forest in Iran.The predictive performance of these models was first assessed by different evaluation criteria： adjusted R^2（R^2_（adj））,root mean square error（RMSE）,relative RMSE（%RMSE）,bias,and relative bias（%bias） criteria.The best model was selected for use as the base mixed-effects model.Random parameters for test plots were estimated with different tree selection options.Results show that the Chapman–Richards model had better predictive ability in terms of adj R^2（0.81）,RMSE（3.7 m）,%RMSE（12.9）,bias（0.8）,%Bias（2.79） than the other models.Furthermore,the calibration response,based on a selection of four trees from the sample plots,resulted in a reduction percentage for bias and RMSE of about 1.6–2.7%.Our results indicate that the calibrated model produced the most accurate results.
基金supported by the "948" Project of the State Forestry Administration of China(No.2013-4-66)
文摘The mortality of trees across diameter class model is a useful tool for predicting changes in stand structure.Mortality data commonly contain a large fraction of zeros and general discrete models thus show more errors.Based on the traditional Poisson model and the negative binomial model,different forms of zero-inflated and hurdle models were applied to spruce-fir mixed forests data to simulate the number of dead trees.By comparing the residuals and Vuong test statistics,the zero-inflated negative binomial model performed best.A random effect was added to improve the model accuracy;however,the mixed-effects zero-inflated model did not show increased advantages.According to the model principle,the zeroinflated negative binomial model was the most suitable,indicating that the"0"events in this study,mainly from the sample"0",i.e.,the zero mortality data,are largely due to the limitations of the experimental design and sample selection.These results also show that the number of dead trees in the diameter class is positively correlated with the number of trees in that class and the mean stand diameter,and inversely related to class size,and slope and aspect of the site.
基金supported by the National Natural Science Foundation of China(11832012)
文摘A state/event fault tree(SEFT)is a modeling technique for describing the causal chains of events leading to failure in software-controlled complex systems.Such systems are ubiquitous in all areas of everyday life,and safety and reliability analyses are increasingly required for these systems.SEFTs combine elements from the traditional fault tree with elements from state-based techniques.In the context of the real-time safety-critical systems,SEFTs do not describe the time properties and important timedependent system behaviors that can lead to system failures.Further,SEFTs lack the precise semantics required for formally modeling time behaviors.In this paper,we present a qualitative analysis method for SEFTs based on transformation from SEFT to timed automata(TA),and use the model checker UPPAAL to verify system requirements’properties.The combination of SEFT and TA is an important step towards an integrated design and verification process for real-time safety-critical systems.Finally,we present a case study of a powerboat autopilot system to confirm our method is viable and valid after achieving the verification goal step by step.
基金supported by the STI2030-Major Projects(2021ZD0200900 to Y.G.Y.)"Light of West China" Program of the Chinese Academy of Sciences(xbzg-zdsys-202302 to Y.G.Y.)
文摘The tree shrew(Tupaia belangeri)has long been proposed as a suitable alternative to non-human primates(NHPs)in biomedical and laboratory research due to its close evolutionary relationship with primates.In recent years,significant advances have facilitated tree shrew studies,including the determination of the tree shrew genome,genetic manipulation using spermatogonial stem cells,viral vector-mediated gene delivery,and mapping of the tree shrew brain atlas.However,the limited availability of tree shrews globally remains a substantial challenge in the field.Additionally,determining the key questions best answered using tree shrews constitutes another difficulty.Tree shrew models have historically been used to study hepatitis B virus(HBV)and hepatitis C virus(HCV)infection,myopia,and psychosocial stress-induced depression,with more recent studies focusing on developing animal models for infectious and neurodegenerative diseases.Despite these efforts,the impact of tree shrew models has not yet matched that of rodent or NHP models in biomedical research.This review summarizes the prominent advancements in tree shrew research and reflects on the key biological questions addressed using this model.We emphasize that intensive dedication and robust international collaboration are essential for achieving breakthroughs in tree shrew studies.The use of tree shrews as a unique resource is expected to gain considerable attention with the application of advanced techniques and the development of viable animal models,meeting the increasing demands of life science and biomedical research.
基金the grants from National Natural Science Foundation of China(No.81660407)Applied Basic Research Project of Yunnan Provincial Science and Technology Department(No.2014FB053)Health Department of Yunnan Province Agency Project(No.2014NS063).
文摘Liver transplantation (LT)is most effective and promising approach for end-stage liver disease.However,there remains room for further improvement and innovation,for example, to reduce ischemic reperfusion injury,transplant rejection and immune tolerance.A good animal model of LT is essential for such innovation in transplant research.Although rat LT model has been used since the last century,it has never been an ideal model because the results observed in rat may not be applied to human because these two species are genetically distinct from each other.In this study,we for the first time performed LT using the tree shrew (Tupaia belangeri),a species in the Order Scandentia which is closely related with primates,and evaluated the possibility to adopt this species as a new model of LT.We performed LT on 30 animals using the two-cuff technique, examining the success rate,the survival rate and the immunological reaction.The recipient operation time was 60 min averagely,and we limited the time of the anhepatic phase within 20 min.Twenty-seven (90%)of the animals survived for at least 3 days after the transplantation. Thirteen animals that did not receive any immunosuppressive drug died in 8 days mostly because of acute rejection effect (n=9),similar to the reaction in human but not in experimental rat.The rest 14 animals that were given rapamycin survived significantly longer (38 days)and half of them survived for 60 days until the end of the study.Our results suggest that performing LT in tree shrews can yield high success rate and high survival rate.More importantly,the tree shrews share similar immunological reaction with human.In addition,previous genomics study found that the tree shrews share more proteins with human.In sum,the tree shrews may outperform the experimental rats and could be used as a better and cost-effective animal model for LT.
