The present study investigates the flow,heat,and mass transfer analysis in the bioconvection of nanofluid containing motile gyrotactic microorganisms through a semi-porous curved oscillatory channel with a magnetic fi...The present study investigates the flow,heat,and mass transfer analysis in the bioconvection of nanofluid containing motile gyrotactic microorganisms through a semi-porous curved oscillatory channel with a magnetic field.These microorganisms produce density gradients by swimming,which induces macroscopic convection flows in the fluid.This procedure improves the mass and heat transfer,illustrating the interaction between biological activity and fluid dynamics.Furthermore,instead of considering traditional Fourier's and Fick's law the energy and concentration equations are developed by incorporating Cattaneo-Christov double diffusion theory.Moreover,to examine the influence of thermophoresis and Brownian diffusions in the fluid we have adopted the Buongiorno nanofluid model.Due to the oscillation of the surface of the channel,the mathematical development of the considered flow problem is obtained in the form of partial differential equations via the curvilinear coordinate system.The convergent series solution of the governing flow equations is obtained after applying the homotopy analysis method(HAM).The effects of different pertinent flow parameters on velocity,motile microorganism density distribution,concentration,pressure,temperature,and skin friction coefficient are examined and discussed in detail with the help of graphs and tables.It is observed during the current study that the density of microorganisms is enhanced for higher values of Reynolds number,Peclet number,radius of curvature variable,and Lewis number.展开更多
Ecological floating bed is an important biological remediation method for water pollution control.During the removal of excess nutrients and pollutants,changes in environmental factors affect the characteristics of mi...Ecological floating bed is an important biological remediation method for water pollution control.During the removal of excess nutrients and pollutants,changes in environmental factors affect the characteristics of microorganisms in aquatic ecosystems.To understand the influences of ecological floating beds on size-fractionated microorganisms,we investigated the community assembly and nitrogen metabolic characteristics of three size-fractionated microorganism groups in the ecological floating bed area,using 18S rDNA,16S rDNA metabarcoding,and metagenomic sequencing techniques.Firstly,we discovered substantial differences between size-fractionated groups in the diversity and compositions of both microeukaryotic and bacterial communities,as well as the influences of floating beds on specific groups.The floating beds appeared to provide more habitats for heterotrophs and symbiotes while potentially inhibiting the growth of certain phytoplankton(cyanobacteria).Secondly,we observed that microeukaryotic and bacterial communities were predominantly influenced by stochastic and deterministic processes,respectively,and they both exhibited distinct patterns across different size-fractionated groups.Notably,microeukaryotic community assembly demonstrated a greater sensitivity to ecological floating beds,as indicated by an increase in dispersal limitation processes.Finally,the nitrogen metabolism functional genes revealed that microbes associated with large-sized particles played a crucial role in dissimilatory nitrate reduction to ammonium(DNRA)and denitrification processes within the floating bed area,thereby facilitating the removal of excess nitrogen nutrients from the water.In contrast,freeliving microorganisms from small-sized groups were linked mainly to the genes involved in nitrogen assimilation and assimilatory nitrate reduction to ammonium(ANRA)processes.These findings help understand the impact of ecological floating beds on the diversity and functional characteristics of microorganism communities in different size-fractionated groups.展开更多
In Burkina Faso, as in other African countries, infertility has become a social burden for the population and a public health problem. Male infertility accounts for 30% to 40% of all infertility cases. The diagnosis o...In Burkina Faso, as in other African countries, infertility has become a social burden for the population and a public health problem. Male infertility accounts for 30% to 40% of all infertility cases. The diagnosis of male infertility or hypofertility is often made by a simple laboratory analysis of sperm to explore sperm parameters. In most African countries, such as Burkina Faso, microbiological analysis in the context of sperm analysis is still not developed, and is carried out solely based on microscopy and traditional culture, which does not allow the growth of fragile and demanding bacteria. Our study investigated the microorganisms of sperm that may be involved in male infertility, using conventional bacteriology techniques and real-time PCR. However, it did not intend to perform a multivariate statistical association analysis to estimate the association of microorganisms with abnormal semen parameters. This prospective cross-sectional pilot study was carried out on patients who visited the bacteriology laboratory of Centre MURAZ, a research Institute in Burkina Faso, for male infertility diagnosis between 2 August and 31 August 2021. Bacteria were isolated and identified using standard bacteriology techniques. In parallel, common pathogenic microorganisms known to be associated with male infertility were targeted and detected in the sperm using a multiplex real-time PCR assay. A total of 38 sperm samples were analyzed by bacteriological culture and bacteria isolated were Staphylococcus aureus (S. aureus) 5.55%, Klebsiella pneumoniae (K. pneumoniae), Enterococcus faecalis (E. faecalis), Streptococcus agalactiae (S. agalactiae) and Staphylococcus hoemalyticus (S. hoemalyticus) respectively 2.70%. Real-time PCR targeted and detected Chlamydia trachomatis (C. trachomatis) at 7.89%, Ureaplasma urealyticum (U. urealyticum) at 21.05%, Ureaplasma parvum (U. parvum) at 18.42%, Mycoplasma hominis (M. hominis) at 15.79%, Mycoplasma genitalium (M. genitalium) at 10.53% and Trichomonas vaginalis (T. vaginalis) at 2.63%. Neisseria gonorrhoeae (N. gonorrhoeae) was targeted by the real-time PCR assay and was not detected (0%) in the tested semen samples. Our study highlights critical limitations of culture performance (low sensitivity), particularly in Burkina Faso, which has a total inability to detect microorganisms (fragile and demanding microorganisms) detected by PCR-based assays. There is therefore an urgent need to at least optimize culture, procedures and algorithms for detection of microorganisms associated with male infertility in clinical laboratories of Burkina Faso. The most effective solution is the routine implementation of molecular diagnostic methods.展开更多
[Objectives]To explore the effects of high soil temperature stress on microorganisms utilizing different carbon sources in the rhizosphere of pepper seedlings.[Methods]Using seedlings of the main pepper cultivar‘Reyi...[Objectives]To explore the effects of high soil temperature stress on microorganisms utilizing different carbon sources in the rhizosphere of pepper seedlings.[Methods]Using seedlings of the main pepper cultivar‘Reyin 1’as experimental materials,five soil temperature gradients(25,30,35,40,and 45℃)were established.After a 96 d cultivation,soil nutrient content and soil microbial functional diversity were measured to elucidate the impact of high soil temperature on the soil microenvironment.[Results]As soil temperature increased,the contents of total nitrogen,alkaline hydrolyzable nitrogen,available phosphorus,and rapidly available potassium generally showed a decreasing trend.However,under the 45℃ treatment,the contents of total nitrogen,available phosphorus,and rapidly available potassium were the highest among all treatments,although the alkaline hydrolyzable nitrogen content was significantly lower compared to the other treatments.BIOLOG analysis revealed that with increasing soil temperature,the average soil microbial absorbance value and the Shannon diversity index decreased significantly.In contrast,the Shannon evenness index and the Simpson dominance index showed no significant differences across the different temperature treatments.This indicates that as soil temperature rises,the carbon source utilization capacity of the soil microbial community decreases,leading to reduced overall carbon metabolic activity and microbial functional diversity,while the dominant microbial populations remained unchanged during this process.Principal component analysis further confirmed effective separation among the different temperature treatments,suggesting that high soil stress significantly altered the structure of the soil microbial community.[Conclusions]In practical production,appropriate measures should be taken to decrease soil temperature to create a favorable rhizosphere microenvironment and thereby promote crop growth.展开更多
[Objectives]To systematically investigate the microbial community composition of rhizosphere soil and endophytes associated with Pogostemon cablin,and to explore the relationships between endophytes and rhizosphere mi...[Objectives]To systematically investigate the microbial community composition of rhizosphere soil and endophytes associated with Pogostemon cablin,and to explore the relationships between endophytes and rhizosphere microorganisms as well as their potential applications.[Methods]Microbial isolates were obtained from rhizosphere soil,root tissues,and stem tissues using the serial dilution and spread plate method.These isolates were identified through morphological characterization,physiological and biochemical assays,and molecular biological techniques.[Results]A total of 18 microbial strains were isolated,including 7 bacterial and 11 fungal strains.Among the bacterial isolates,Pseudomonas spp.and Bacillus spp.were predominant,while the fungal isolates were mainly represented by Aspergillus spp.Certain bacterial strains,notably Pseudomonas spp.,exhibited potential abilities for indole-3-acetic acid(IAA)production,nitrogen fixation,and antagonistic activity against pathogenic microorganisms,suggesting their potential utility as biocontrol agents and promoters of plant growth.[Conclusions]This study establishes a foundational understanding of the microbial community characteristics in the rhizosphere and tissues of P.cablin,as well as their roles in plant growth and development.展开更多
The extreme environment of the polar regions has driven the evolution of unique metabolic mechanisms in microorganisms,resulting in structurally diverse and highly active secondary metabolites.These metabolites are no...The extreme environment of the polar regions has driven the evolution of unique metabolic mechanisms in microorganisms,resulting in structurally diverse and highly active secondary metabolites.These metabolites are not only crucial for microbial adaptation to extreme conditions,but also exhibit significant potential for applications in medicine,agriculture(e.g.,biocontrol),and industry.This review provides a comprehensive overview of 111 secondary metabolites derived from polar microorganisms reported between 2013 and 2025,with a focus on advances in their classification,biological activities,and biosynthetic gene cluster mining techniques.Additionally,it highlights key strategies for advancing future investigations,providing a valuable reference for continued exploration in this promising field.Notably,polar microbial secondary metabolites also hold promising applications in agriculture,particularly in biocontrol,soil health enhancement,and stress-resistant crop development.展开更多
文摘The present study investigates the flow,heat,and mass transfer analysis in the bioconvection of nanofluid containing motile gyrotactic microorganisms through a semi-porous curved oscillatory channel with a magnetic field.These microorganisms produce density gradients by swimming,which induces macroscopic convection flows in the fluid.This procedure improves the mass and heat transfer,illustrating the interaction between biological activity and fluid dynamics.Furthermore,instead of considering traditional Fourier's and Fick's law the energy and concentration equations are developed by incorporating Cattaneo-Christov double diffusion theory.Moreover,to examine the influence of thermophoresis and Brownian diffusions in the fluid we have adopted the Buongiorno nanofluid model.Due to the oscillation of the surface of the channel,the mathematical development of the considered flow problem is obtained in the form of partial differential equations via the curvilinear coordinate system.The convergent series solution of the governing flow equations is obtained after applying the homotopy analysis method(HAM).The effects of different pertinent flow parameters on velocity,motile microorganism density distribution,concentration,pressure,temperature,and skin friction coefficient are examined and discussed in detail with the help of graphs and tables.It is observed during the current study that the density of microorganisms is enhanced for higher values of Reynolds number,Peclet number,radius of curvature variable,and Lewis number.
基金Supported by the National Natural Science Foundation of China(Nos.42141003,42176147)the National Key Research and Development Program of China(No.2022YFF0802204)the Xiamen Key Laboratory of Urban Sea Ecological Conservation and Restoration(USER)(Nos.USER2021-1,USER2021-5)。
文摘Ecological floating bed is an important biological remediation method for water pollution control.During the removal of excess nutrients and pollutants,changes in environmental factors affect the characteristics of microorganisms in aquatic ecosystems.To understand the influences of ecological floating beds on size-fractionated microorganisms,we investigated the community assembly and nitrogen metabolic characteristics of three size-fractionated microorganism groups in the ecological floating bed area,using 18S rDNA,16S rDNA metabarcoding,and metagenomic sequencing techniques.Firstly,we discovered substantial differences between size-fractionated groups in the diversity and compositions of both microeukaryotic and bacterial communities,as well as the influences of floating beds on specific groups.The floating beds appeared to provide more habitats for heterotrophs and symbiotes while potentially inhibiting the growth of certain phytoplankton(cyanobacteria).Secondly,we observed that microeukaryotic and bacterial communities were predominantly influenced by stochastic and deterministic processes,respectively,and they both exhibited distinct patterns across different size-fractionated groups.Notably,microeukaryotic community assembly demonstrated a greater sensitivity to ecological floating beds,as indicated by an increase in dispersal limitation processes.Finally,the nitrogen metabolism functional genes revealed that microbes associated with large-sized particles played a crucial role in dissimilatory nitrate reduction to ammonium(DNRA)and denitrification processes within the floating bed area,thereby facilitating the removal of excess nitrogen nutrients from the water.In contrast,freeliving microorganisms from small-sized groups were linked mainly to the genes involved in nitrogen assimilation and assimilatory nitrate reduction to ammonium(ANRA)processes.These findings help understand the impact of ecological floating beds on the diversity and functional characteristics of microorganism communities in different size-fractionated groups.
文摘In Burkina Faso, as in other African countries, infertility has become a social burden for the population and a public health problem. Male infertility accounts for 30% to 40% of all infertility cases. The diagnosis of male infertility or hypofertility is often made by a simple laboratory analysis of sperm to explore sperm parameters. In most African countries, such as Burkina Faso, microbiological analysis in the context of sperm analysis is still not developed, and is carried out solely based on microscopy and traditional culture, which does not allow the growth of fragile and demanding bacteria. Our study investigated the microorganisms of sperm that may be involved in male infertility, using conventional bacteriology techniques and real-time PCR. However, it did not intend to perform a multivariate statistical association analysis to estimate the association of microorganisms with abnormal semen parameters. This prospective cross-sectional pilot study was carried out on patients who visited the bacteriology laboratory of Centre MURAZ, a research Institute in Burkina Faso, for male infertility diagnosis between 2 August and 31 August 2021. Bacteria were isolated and identified using standard bacteriology techniques. In parallel, common pathogenic microorganisms known to be associated with male infertility were targeted and detected in the sperm using a multiplex real-time PCR assay. A total of 38 sperm samples were analyzed by bacteriological culture and bacteria isolated were Staphylococcus aureus (S. aureus) 5.55%, Klebsiella pneumoniae (K. pneumoniae), Enterococcus faecalis (E. faecalis), Streptococcus agalactiae (S. agalactiae) and Staphylococcus hoemalyticus (S. hoemalyticus) respectively 2.70%. Real-time PCR targeted and detected Chlamydia trachomatis (C. trachomatis) at 7.89%, Ureaplasma urealyticum (U. urealyticum) at 21.05%, Ureaplasma parvum (U. parvum) at 18.42%, Mycoplasma hominis (M. hominis) at 15.79%, Mycoplasma genitalium (M. genitalium) at 10.53% and Trichomonas vaginalis (T. vaginalis) at 2.63%. Neisseria gonorrhoeae (N. gonorrhoeae) was targeted by the real-time PCR assay and was not detected (0%) in the tested semen samples. Our study highlights critical limitations of culture performance (low sensitivity), particularly in Burkina Faso, which has a total inability to detect microorganisms (fragile and demanding microorganisms) detected by PCR-based assays. There is therefore an urgent need to at least optimize culture, procedures and algorithms for detection of microorganisms associated with male infertility in clinical laboratories of Burkina Faso. The most effective solution is the routine implementation of molecular diagnostic methods.
基金Supported by Natural Science Foundation of Hainan Province(320MS108)Scientific and Technological Innovation Team of the National Center for Tropical Agricultural Science,Chinese Academy of Tropical Agricultural Sciences(CATASCXTD202303)Key Laboratory of Genetic Resources Utilization of Spice and Beverage Crops,Ministry of Agriculture and Rural Affairs,Hainan Provincial Key Laboratory of Genetic Improvement and Quality Regulation for Tropical Spice and Beverage Crops,or Hainan Provincial Engineering Research Center for Tropical Spice and Beverage Crops(2019xys007).
文摘[Objectives]To explore the effects of high soil temperature stress on microorganisms utilizing different carbon sources in the rhizosphere of pepper seedlings.[Methods]Using seedlings of the main pepper cultivar‘Reyin 1’as experimental materials,five soil temperature gradients(25,30,35,40,and 45℃)were established.After a 96 d cultivation,soil nutrient content and soil microbial functional diversity were measured to elucidate the impact of high soil temperature on the soil microenvironment.[Results]As soil temperature increased,the contents of total nitrogen,alkaline hydrolyzable nitrogen,available phosphorus,and rapidly available potassium generally showed a decreasing trend.However,under the 45℃ treatment,the contents of total nitrogen,available phosphorus,and rapidly available potassium were the highest among all treatments,although the alkaline hydrolyzable nitrogen content was significantly lower compared to the other treatments.BIOLOG analysis revealed that with increasing soil temperature,the average soil microbial absorbance value and the Shannon diversity index decreased significantly.In contrast,the Shannon evenness index and the Simpson dominance index showed no significant differences across the different temperature treatments.This indicates that as soil temperature rises,the carbon source utilization capacity of the soil microbial community decreases,leading to reduced overall carbon metabolic activity and microbial functional diversity,while the dominant microbial populations remained unchanged during this process.Principal component analysis further confirmed effective separation among the different temperature treatments,suggesting that high soil stress significantly altered the structure of the soil microbial community.[Conclusions]In practical production,appropriate measures should be taken to decrease soil temperature to create a favorable rhizosphere microenvironment and thereby promote crop growth.
基金Supported by Rural Science and Technology Commissioner Project of Guangdong Province(KTP20240806).
文摘[Objectives]To systematically investigate the microbial community composition of rhizosphere soil and endophytes associated with Pogostemon cablin,and to explore the relationships between endophytes and rhizosphere microorganisms as well as their potential applications.[Methods]Microbial isolates were obtained from rhizosphere soil,root tissues,and stem tissues using the serial dilution and spread plate method.These isolates were identified through morphological characterization,physiological and biochemical assays,and molecular biological techniques.[Results]A total of 18 microbial strains were isolated,including 7 bacterial and 11 fungal strains.Among the bacterial isolates,Pseudomonas spp.and Bacillus spp.were predominant,while the fungal isolates were mainly represented by Aspergillus spp.Certain bacterial strains,notably Pseudomonas spp.,exhibited potential abilities for indole-3-acetic acid(IAA)production,nitrogen fixation,and antagonistic activity against pathogenic microorganisms,suggesting their potential utility as biocontrol agents and promoters of plant growth.[Conclusions]This study establishes a foundational understanding of the microbial community characteristics in the rhizosphere and tissues of P.cablin,as well as their roles in plant growth and development.
基金supported by National Natural Science Foundation of China(Grant nos.32130109,41761134050).
文摘The extreme environment of the polar regions has driven the evolution of unique metabolic mechanisms in microorganisms,resulting in structurally diverse and highly active secondary metabolites.These metabolites are not only crucial for microbial adaptation to extreme conditions,but also exhibit significant potential for applications in medicine,agriculture(e.g.,biocontrol),and industry.This review provides a comprehensive overview of 111 secondary metabolites derived from polar microorganisms reported between 2013 and 2025,with a focus on advances in their classification,biological activities,and biosynthetic gene cluster mining techniques.Additionally,it highlights key strategies for advancing future investigations,providing a valuable reference for continued exploration in this promising field.Notably,polar microbial secondary metabolites also hold promising applications in agriculture,particularly in biocontrol,soil health enhancement,and stress-resistant crop development.
