Elevation patterns and assembly processes of soil microbial community structures are essential for understanding biogeo-chemical processes in mountain systems.Differences in soil properties caused by elevation gradien...Elevation patterns and assembly processes of soil microbial community structures are essential for understanding biogeo-chemical processes in mountain systems.Differences in soil properties caused by elevation gradients can regulate the spatial distribu-tion and network complexity of the community structure.To explore the variations in soil microbial community structures and their as-sembly mechanisms across different elevations of the Changbai Mountains,as well as their responses to environmental factors,we col-lected microbial samples along an elevational gradient(seven elevations containing four vegetation zones)on the western slope of the Changbai Mountains using the method of metagenomic sequencing.The results showed a significant difference(P<0.05)for the Chao1 index across different elevations,but no significant difference was observed for the Shannon and Simpson indices.With increasing elev-ation,the number of nodes and links in the microbial network gradually decreased.Acidobacteria were highly connected to many nodes.The microbial communities indicated a significant distance-decay relationship(P<0.001)and were affected more by stochastic pro-cesses along the elevation gradient.The results of the Structural Equation Model(SEM)showed that elevation had direct significant ef-fect on carbon(C,P<0.01),nitrogen(N,P<0.01),and phosphorus(P,P<0.05)and weak negative effect on their ecological stoi-chiometry.Elevation was one of the major variables contributing to microbial network topology.The contribution of C and N to micro-bial network complexity was higher than that of P.Our study provides valuable insights into the responses of soil microbial communit-ies to elevation variations.展开更多
Anammox bacteria in constructed wetlands(CWs)play pivotal role in sustainable nitrogen transformation,yet existing studies lack comprehensive analysis of environmental gradients and microbial interactions,both key fac...Anammox bacteria in constructed wetlands(CWs)play pivotal role in sustainable nitrogen transformation,yet existing studies lack comprehensive analysis of environmental gradients and microbial interactions,both key factors in anammox bacteria enrichment.This study investigated the mechanisms driving anammox bacteria enrichment in lab-scale simulated CWs treating high-nitrogen wastewater,focusing on bacterial community re-sponses across wetland layers with various strategies,including continuous up-flow influent,nitrogen loading increase,effluent recirculation,intermittent influent,and anammox bacteria inoculation.Results showed that total relative and absolute abundances of anammox bacteria ranged from 0.77%to 12.50%and from 0.13 to 6.46×10^(7) copies/g,respectively.Dissolved oxygen and pH had significant positive correlations with the absolute abundance of anammox bacteria,while organic matter and nitrate negatively impacted their relative abundance.Permutational multivariate analysis of variance indicated that spatial heterogeneity explained more variation in anammox bacteria abundance(43.44%)compared to operational strategies(8.58%).In terms of microbial interactions,60 dominant species exhibited potential correlations with anammox bacteria,comprising 170 interactions(105 positive and 65 negative),which suggested that anammox bacteria generally foster cooperative relationships with dominant bacteria.Notably,significant interspecies interactions were observed between Candidatus Kuenenia(dominant anammox bacteria in CWs)and species within the genera Chitinivibrio-nia and Anaerolineaceae,suggesting that microbial interactions primarily manifest as indirect facilitative effects rather than direct mutualistic relationships.Given that the Normalized Stochasticity Ratio in CWs were<50%,this study inferred that environmental gradients have greater influence on anammox bacteria than microbial interactions.展开更多
Pollution from heavy metals(HMs)(Cd,As,Cr,and Ni,etc.)has become a serious environmental issue in urban wetland ecosystems with more and more attention.Previous studies conducted in agricultural soils,rivers,and lakes...Pollution from heavy metals(HMs)(Cd,As,Cr,and Ni,etc.)has become a serious environmental issue in urban wetland ecosystems with more and more attention.Previous studies conducted in agricultural soils,rivers,and lakes demonstrated that microbial communities exhibit a response to HM pollution.Yet,little is known about the response of microbial communities to HM pollution in urban wetland ecosystems.We examined how heavy metals affect the stability of the microbial networks in the sediments of Sanyang wetland,Wenzhou,China.Key environmental parameters,including HMs,TC(total carbon),TN(total nitrogen),TP(total phosphorus),S,and pH,varied profoundly between moderately and heavily polluted areas in shaping microbial communities.Specifically,the microbial community composition in moderately polluted sites correlated significantly(P<0.05)with Ni,Cu,Cd and TP,whereas in heavily polluted sites,they correlated significantly with Cd,TN,TP,and S.Results show that the heavily polluted sites demonstrated more intricate and more stable microbial networks than those of the moderately polluted area.The heavily polluted sites exhibited higher values for various network parameters including total nodes,total links,average degree,average clustering coefficient,connectance,relative modularity,robustness,and cohesion.Moreover,the structural equation modeling analysis demonstrated a positive correlation between the stability of microbial networks and Cd,TN,TP,and S in heavily polluted sites.Conversely,in moderately polluted sites,the correlation was positively linked to Cd,Ni,and sediment pH.It implies that Cd could potentially play a crucial role in affecting the stability of microbial networks.This study shall enhance our comprehension of microbial co-occurrence patterns in urban wetland ecosystems and offer insights into the ways in which microbial communities respond to environmental factors in varying levels of HM pollution.展开更多
Continuous cropping can lead to soil environment deterioration,cause plant health problems,and reduce crop productivity.However,the response mechanisms of soil microbial co-occurrence patterns to the duration of conti...Continuous cropping can lead to soil environment deterioration,cause plant health problems,and reduce crop productivity.However,the response mechanisms of soil microbial co-occurrence patterns to the duration of continuous melon cropping remain poorly understood.Here,we employed the metagenomic techniques to comparatively investigate the bulk and rhizosphere soil microbial communities of major melon-producing regions(where the duration of continuous melon cropping ranges from 1 to 30 a)in the eastern and southern parts of Xinjiang Uygur Autonomous Region,China.The results showed that soil pH clearly decreased with increasing melon cropping duration,while soil electrical conductivity(EC)and the other soil nutrient indices increased with increasing melon cropping duration(with the exception of AN and TK in the southern melon-producing region).The most dominant bacterial phyla were Proteobacteria and Actinobacteria,and the most abundant fungal phyla were Ascomycota and Mucoromycota.Redundancy analysis(RDA)indicated that soil pH and EC had no significant effects on the bacterial communities.However,after many years of continuous melon cropping in the southern melon-producing region,fungal communities were significantly negatively correlated with soil pH and significantly positively correlated with soil EC(P<0.050).Co-occurrence network analysis showed that continuous melon cropping increased the complexity but decreased the connectivity of the cross-domain microbial networks.Moreover,the enrichment patterns of microorganisms in the main microbial network modules varied significantly with the duration of continuous melon cropping.Based on the analysis of keystone taxa,we found that continuous melon cropping increased some plant pathogens(e.g.,Fusarium and Stagonospora)but decreased beneficial bacteria(e.g.,Mesorhizobium and Pseudoxanthomonas).In conclusion,this study has greatly enhanced the understanding of the effects of continuous melon cropping on alterations in the microbial community structure and ecological networks in Xinjiang.展开更多
Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be th...Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be the key to this process,but research into their role in subsoil amelioration is limited. Therefore, a field experiment was conducted in 2018 in a region in northeastern China with Hapli-Udic Cambisol using four treatments: conventional tillage(CT, tillage to a depth of 15 cm with no straw incorporation), straw incorporation with conventional tillage(SCT, tillage to a depth of 15 cm),inversion tillage(IT, tillage to a depth of 35 cm) and straw incorporation with inversion tillage(SIT, tillage to a depth of 35 cm). The soils were managed by inversion to a depth of 15 or 35 cm every year after harvest. The results indicated that SIT improved soil multi-nutrient cycling variables and increased the availability of key nutrients such as soil organic carbon, total nitrogen, available nitrogen, available phosphorus and available potassium in both the topsoil and subsoil.In contrast to CT and SCT, SIT created a looser microbial network structure but with highly centralized clusters by reducing the topological properties of average connectivity and node number, and by increasing the average path length and the modularity. A Random Forest analysis found that the average path length and the clustering coefficient were the main determinants of soil multi-nutrient cycling. These findings suggested that SIT can be an effective option for improving soil multi-nutrient cycling and the structure of microbial networks, and they provide crucial information about the microbial strategies that drive the decomposition of straw in Hapli-Udic Cambisol.展开更多
Sugarcane/soybean intercropping with reduced nitrogen addition is an important sustainable agricultural pattern that can alter soil ecological functions,thereby affecting straw decomposition in the soil.However,the me...Sugarcane/soybean intercropping with reduced nitrogen addition is an important sustainable agricultural pattern that can alter soil ecological functions,thereby affecting straw decomposition in the soil.However,the mechanisms underlying changes in soil organic carbon(SOC)composition and microbial communities during straw decomposition under long-term intercropping with reduced nitrogen addition remain unclear.In this study,we conducted an in-situ microplot incubation experiment with^(13)C-labeled soybean straw residue addition in a two-factor(cropping pattern:sugarcane monoculture(MS)and sugarcane/soybean intercropping(SB);nitrogen addition levels:reduced nitrogen addition(N1)and conventional nitrogen addition(N2))long-term experimental field plot.The results showed that the SBN1 treatment significantly increased the residual particulate organic carbon(POC)and residual microbial biomass carbon(MBC)contents during straw decomposition,and the straw carbon in soil was mainly conserved as POC.Straw addition changed the structure and reduced the diversity of the soil microbial community,but microbial diversity gradually recovered with decomposition time.During straw decomposition,the intercropping pattern significantly increased the relative abundances of Firmicutes and Ascomycota.In addition,straw addition reduced microbial network complexity in the sugarcane/soybean intercropping pattern but increased it in the sugarcane monoculture pattern.Nevertheless,microbial network complexity remained higher in the SBN1 treatment than in the MSN1 treatment.In general,the SBN1 treatment significantly increased the diversity of microbial communities and the relative abundance of microorganisms associated with organic matter decomposition,and the changes in microbial communities were mainly driven by the residual labile SOC fractions.These findings suggest that more straw carbon can be sequestered in the soil under sugarcane/soybean intercropping with reduced nitrogen addition to maintain microbial diversity and contribute to the development of sustainable agriculture.展开更多
The problem of soil polycyclic aromatic hydrocarbon(PAH)pollution in coking plant sites has been widely studied in recent years,but there is a lack of research on the correlation between soil microorganisms,soil metab...The problem of soil polycyclic aromatic hydrocarbon(PAH)pollution in coking plant sites has been widely studied in recent years,but there is a lack of research on the correlation between soil microorganisms,soil metabolomics,and soil properties.Thus,in this study,the long-term impact of coke combustion on soil microbial community structure,enzyme activities,and metabolic pathways within a former coking plant site was investigated.Soil samples were collected from both the coking production area(CA group)and office area(OLA group),approximately 0 to 20 cm in depth.Compared with OLA group,elevated levels of 16 PAHs in the list of US EPA were detected by gas chromatography-mass spectrometry in the CA group.Several dominant microorganisms,such as Altererythrobacter,Lysobacter,and Sulfurifustis,were identified by 16 s ribosomal DNA sequencing in the CA group.The fatty acid biosynthesis pathway exhibited specific inhibition,while the phenylalanine metabolic pathwaywas promoted in response to PAH stress.Long-term PAH exposure led to the inhibition of soil urease activity.The co-occurrence network ofmicroorganisms revealed intricate patterns of co-metabolism and co-adaptation within complex bacterial communities,facilitating their adaptation to and decomposition of soil-borne PAHs.This research could provide valuable insights into the community characteristics andmetabolic mechanisms of microorganisms inhabiting PAH-polluted soil within coking plant sites.The findings enhance our understanding of the indigenous soil microbiome and its intricate network dynamics under the persistent stress of PAHs,contributing to a more comprehensive knowledge of soil ecosystems in such environments.展开更多
The land application of livestock manure has been widely acknowledged as a beneficial approach for nutrient recycling and environmental protection.However,the impact of residual antibiotics,a common contaminant of man...The land application of livestock manure has been widely acknowledged as a beneficial approach for nutrient recycling and environmental protection.However,the impact of residual antibiotics,a common contaminant of manure,on the degradation of organic compounds and nutrient release in Eutric Regosol is not well understood.Here,we studied,how oxytetracycline(OTC)and ciprofloxacin(CIP)affect the decomposition,microbial community structure,extracellular enzyme activities and nutrient release from cattle and pig manure using litterbag incubation experiments.Results showed that OTC and CIP greatly inhibited livestock manure decomposition,causing a decreased rate of carbon(28%-87%),nitrogen(15%-44%)and phosphorus(26%-43%)release.The relative abundance of gramnegative(G-)bacteria was reduced by 4.0%-13%while fungi increased by 7.0%-71%during a 28-day incubation period.Co-occurrence network analysis showed that antibiotic exposure disrupted microbial interactions,particularly among G-bacteria,G+bacteria,and actinomycetes.These changes in microbial community structure and function resulted in decreased activity of urease,β-1,4-N-acetyl-glucosaminidase,alkaline protease,chitinase,and catalase,causing reduced decomposition and nutrient release in cattle and pig ma-nures.These findings advance our understanding of decomposition and nutrient recycling from manure-contaminated antibiotics,which will help facilitate sustainable agricultural production and soil carbon sequestration.展开更多
Evaluating petroleum contamination risk and implementing remedial measures in agricultural soil rely on indicators such as soil metal(loid)s and microbiome alterations.However,the response of these indicators to petro...Evaluating petroleum contamination risk and implementing remedial measures in agricultural soil rely on indicators such as soil metal(loid)s and microbiome alterations.However,the response of these indicators to petroleum contamination remains under-investigated.The present study investigated the soil physicochemical features,metal(loid)s,microbial communities and networks,and phospholipid fatty acids(PLFAs)community structures in soil samples collected from long-(LC)and short-term(SC)petroleum-contaminated oil fields.The results showed that petroleum contamination increased the levels of soil total petroleum hydrocarbon,carbon,nitrogen,sulfur,phosphorus,calcium,copper,manganese,lead,and zinc,and decreased soil pH,microbial biomass,bacterial and fungal diversity.Petroleum led to a rise in the abundances of soil Proteobacteria,Ascomycota,Oleibacter,and Fusarium.Network analyses showed that the number of network links(Control vs.SC,LC=1181 vs.700,1021),nodes(Control vs.SC,LC=90 vs.71,83)and average degree(Control vs.SC,LC=26.244 vs.19.718,24.602)recovered as the duration of contamination increased.Petroleum contamination also reduced the concentration of soil PLFAs,especially bacterial.These results demonstrate that brief exposure to high levels of petroleum contamination alters the physicochemical characteristics of the soil as well as the composition of soil metal(loid)s andmicroorganisms,leading to a less diverse soilmicrobial network that is more susceptible to damage.Future research should focus on the culturable microbiome of soil under petroleum contamination to provide a theoretical basis for further remediation.展开更多
The taxonomic composition and function of endophytic microbial communities in plants are strongly influenced by environmental changes. The impact of nitrogen (N) fertilization on the diversity of microbial communities...The taxonomic composition and function of endophytic microbial communities in plants are strongly influenced by environmental changes. The impact of nitrogen (N) fertilization on the diversity of microbial communities in the underground parts of plants that are tolerant of barren environments throughout their growth period remains largely unexplored. Here, by high-throughput sequencing technology, an experiment was performed at the Pailou Experimental Station of Nanjing Agricultural University, where the soil is a yellow-brown soil, to analyze fluctuations in the microbial communities of Jerusalem artichoke (Helianthus tuberosus L.) underground parts in two treatments, application of N, P, and K fertilizers (NPK) and application of only P and K fertilizers (PK), from March 2018 to January 2019. Total, nitrate, and ammonium N contents of soil and Jerusalem artichoke were significantly decreased in the PK treatment. The bacterial community, particularly Acinetobacter, dominated throughout the growth period, peaking in November and accounting for 88.9% and 87.3%, respectively, in the NPK and PK treatments. The absence of N fertilizer (i.e., NP treatment) had minimal effect on the bacterial community composition compared to the fungal community composition. The α-diversity of bacteria in tubers was not substantial, while that in roots was dramatically reduced in July and September in the NP treatment. Notably, the α-diversity of fungal species exhibited more pronounced seasonal variations than that of bacteria under both fertilizer conditions. The lack of N fertilizer lessened the complexity of bacterial network structure and reduced bacterial community similarity (β-diversity) in different months. Interestingly, the β-diversity and network structure of fungal community in the underground tissues of Jerusalem artichoke showed less sensitivity to N fertilizer compared to those of bacterial community. This study improves the understanding of the dynamic response of endophytic microorganisms to N fertilizer application in the underground parts of Jerusalem artichoke tolerant to barren environments.展开更多
Anaerobic oxidation of methane(AOM)can contribute to reducing methane emissions in landfills;however,the AOM rates vary depending on the inoculum source.This study addressed the capacity of AOM of a fermentative micro...Anaerobic oxidation of methane(AOM)can contribute to reducing methane emissions in landfills;however,the AOM rates vary depending on the inoculum source.This study addressed the capacity of AOM of a fermentative microbial community derived from a reactor treatingmunicipal solidwastes.First,the inoculum’s autotrophic capacitywas verified using a gasmixture of 75% CO_(2) and 25% H_(2).Results demonstrated that the fermentative microbial community reached amaximum CO_(2) consumption rate of 22.5±1.2 g CO_(2)/(m^(3)·h),obtaining acetate as the main product.Then,the inoculum was grown on a gas mixture of 50%CH_(4),35%CO_(2),and 15%N_(2),using iron(Fe^(3+))as the electron acceptor.The AOM rates increased over time and peaked at 3.1±0.9 g CH_(4)/(m^(3)·h)by 456 h with the simultaneous consumption of CO_(2).Acetate was the main product,with amaximum concentration of 180±9mg/L.By 408 h,a bacterial cluster of indicator species correlated with the AOM rates,including to Rhodobactereceae(r=0.80),Oceanicola(r=0.80),Propionicicella(r=0.77),Christensenellaceae(r=0.58),Oscillospiraceae(r=0.53),Mobilitalea(r=0.66),Hungateiclostridiaceae(r=0.46),and Izemoplasmatales(r=0.77).Methanosarcina,Methanobacterium,and Methanoculleus correlated with the AOM and CO_(2) consumption rates.A co-occurrence network analysis showed that Methanosarcina positively interacted with syntrophic bacteria like Christensenellaceae and Acinetobacter and diverse heterotrophic bacteria.This study demonstrated the feasibility of obtaining a CH_(4)-oxidizing microbial community in 16 days,exhibiting AOM rates higher than those reported for soils.展开更多
Soil nitrogen(N)cycling is one of the most critical biogeochemical cycles,and N cycling-related microorganisms are the primary driving force behind N cycling in natural environments.The large karst sinkholes in China,...Soil nitrogen(N)cycling is one of the most critical biogeochemical cycles,and N cycling-related microorganisms are the primary driving force behind N cycling in natural environments.The large karst sinkholes in China,known as Tiankengs,harbor abundant unique biological resources due to their particular environmental conditions.However,N cycling-related microorganisms in Tiankeng soils and their connection to ecosystem processes remain poorly studied.In this study,we investigated the distribution patterns and genomic diversity of N cycling-related microorganisms both inside and outside the Luohun cave Tiankeng in Guizhou,China,utilizing high-throughput sequencing and other techniques.The results indicated that the diversities and abundances of denitrifying bacteria,ammonia-oxidizing bacteria,and ammonia-oxidizing archaea communities inside the Tiankeng were higher than those outside the Tiankeng;however,the microbial network relationships were more fragile inside the Tiankeng.The most abundant species of denitrifying bacteria,ammonia-oxidizing bacteria,and ammonia-oxidizing archaea inside the Tiankeng were unclassified_p_Proteobacteria(47.8%),unclassified_k_norank(AOB,OTU121,37.3%),and unclassified_g_norank_f_norank_o_norank_c_environmental_samples(55.7%),respectively;outside the Tiankeng,they were unclassified_k_norank_d_bacteria(54.5%),unclassified_k_norank(AOB,OTU121,48.1%),and unclassified_k_norank(AOA,OTU70,49.6%),respectively.Additionally,the N content inside the Tiankeng was significantly lower(P<0.05)under the influence of these N cycling-related microorganisms,whereas the nutrient contents were higher than that outside the Tiankeng.To the best of our knowledge,this is the first report on the crucial microbial distribution patterns driving N cycling in karst Tiankengs and provides new insights into the structure and potential functions of N cycling-related microorganisms in the unique ecological environment of fragile Tiankeng ecosystems.展开更多
Objective:This study investigated trends in the study of phytochemical treatment of post-traumatic stress disorder(PTSD).Methods:The Web of Science database(2007-2022)was searched using the search terms“phytochemical...Objective:This study investigated trends in the study of phytochemical treatment of post-traumatic stress disorder(PTSD).Methods:The Web of Science database(2007-2022)was searched using the search terms“phytochemicals”and“PTSD,”and relevant literature was compiled.Network clustering co-occurrence analysis and qualitative narrative review were conducted.Results:Three hundred and one articles were included in the analysis of published research,which has surged since 2015 with nearly half of all relevant articles coming from North America.The category is dominated by neuroscience and neurology,with two journals,Addictive Behaviors and Drug and Alcohol Dependence,publishing the greatest number of papers on these topics.Most studies focused on psychedelic intervention for PTSD.Three timelines show an“ebb and flow”phenomenon between“substance use/marijuana abuse”and“psychedelic medicine/medicinal cannabis.”Other phytochemicals account for a small proportion of the research and focus on topics like neurosteroid turnover,serotonin levels,and brain-derived neurotrophic factor expression.Conclusion:Research on phytochemicals and PTSD is unevenly distributed across countries/regions,disciplines,and journals.Since 2015,the research paradigm shifted to constitute the mainstream of psychedelic research thus far,leading to the exploration of botanical active ingredients and molecular mechanisms.Other studies focus on anti-oxidative stress and anti-inflammation.展开更多
Land use influences soil biota community composition and diversity,and then belowground ecosystem processes and functions.To characterize the effect of land use on soil biota,soil nematode communities in crop land,for...Land use influences soil biota community composition and diversity,and then belowground ecosystem processes and functions.To characterize the effect of land use on soil biota,soil nematode communities in crop land,forest land and fallow land were investigated in six regions of northern China.Generic richness,diversity,abundance and biomass of soil nematodes was the lowest in crop land.The richness and diversity of soil nematodes were 28.8and 15.1%higher in fallow land than in crop land,respectively.No significant differences in soil nematode indices were found between forest land and fallow land,but their network keystone genera composition was different.Among the keystone genera,50%of forest land genera were omnivores-predators and 36%of fallow land genera were bacterivores.The proportion of fungivores in forest land was 20.8%lower than in fallow land.The network complexity and the stability were lower in crop land than forest land and fallow land.Soil pH,NH_(4)^(+)-N and NO_(3)^(–)-N were the major factors influencing the soil nematode community in crop land while soil organic carbon and moisture were the major factors in forest land.Soil nematode communities in crop land influenced by artificial management practices were more dependent on the soil environment than communities in forest land and fallow land.Land use induced soil environment variation and altered network relationships by influencing trophic group proportions among keystone nematode genera.展开更多
Classifying the texture of granules in 2D images has aroused manifold research atten-tion for its technical challenges in image processing areas.This letter presents an aggregate texture identification approach by joi...Classifying the texture of granules in 2D images has aroused manifold research atten-tion for its technical challenges in image processing areas.This letter presents an aggregate texture identification approach by jointly using Gray Level Co-occurrence Probability(GLCP) and BP neural network techniques.First, up to 8 GLCP-associated texture feature parameters are defined and computed, and these consequent parameters next serve as the inputs feeding to the BP neural network to calculate the similarity to any of given aggregate texture type.A finite number of aggregate images of 3 kinds, with each containing specific type of mineral particles, are put to the identification test, experimentally proving the feasibility and robustness of the proposed method.展开更多
Background Diarrhea remains a major health concern in both young animals and humans.Prevotella spp.,a dominant commensal genus in the healthy porcine gut,becomes increasingly abundant following weaning,suggesting a po...Background Diarrhea remains a major health concern in both young animals and humans.Prevotella spp.,a dominant commensal genus in the healthy porcine gut,becomes increasingly abundant following weaning,suggesting a potential role during this critical transitional period.However,its involvement in post-weaning diarrhea remains poorly understood.Here,we aim to elucidate the role and underlying mechanisms of Prevotella in alleviating diarrhea in weaned piglets.Results To model unsanitary housing conditions,piglets were housed in uncleaned pens containing residual fecal matter from previous occupants and exposed to cold stress by maintaining the ambient temperature at 19℃,below the optimal 28℃.Under these conditions,piglets were orally administered either a blank medium(CON,n=10×2)or Prevotella copri at 1×10^(8)CFU(Pc,n=10×2)on d 1,3,and 5.After 28 d,cold stress induced a diarrhea incidence of 33.45%in the CON group,while P.copri supplementation significantly reduced the diarrhea rate to 19.73%.Treatment with P.copri markedly improved intestinal morphology in the small intestine,decreased serum levels of lipopolysaccharide(LPS)and intestinal fatty acid-binding protein(i-FABP),and enhanced total antioxidant capacity(T-AOC)and catalase(CAT)activity.Quantitative PCR and 16S rRNA gene sequencing revealed that P.copri significantly increased the colonic abundance of Prevotella,reshaping both the composition and functional profile of the gut microbiota.Moreover,P.copri enhanced the modularity and robustness of microbial ecological networks.Untargeted metabolomic profiling of colonic contents revealed a significant enrichment of metabolites involved in the arachidonic acid pathway following P.copri supplementation.In parallel,untargeted metabolomics of P.copri culture supernatants identified differential metabolic pathways including metabolic pathways,biosynthesis of secondary metabolites,and biosynthesis of antibiotics.In vitro assays demonstrated that P.copri-derived metabolites inhibited the growth of three common porcine intestinal pathogens.Furthermore,both P.copri metabolites and arachidonic acid enhanced intestinal barrier integrity and suppressed TNF-α-induced inflammation and apoptosis in Caco-2 cells through activation of the AHR–Nrf2 signaling pathway.Conclusions These findings highlight the role of P.copri in maintaining gut homeostasis and provide new insights into microbiota-based interventions for early-life intestinal disorders.展开更多
Intensive management is known to markedly alter soil carbon(C)storage and turnover in Moso bamboo forests compared with extensive management.However,the effects of intensive management on soil respiration(RS)component...Intensive management is known to markedly alter soil carbon(C)storage and turnover in Moso bamboo forests compared with extensive management.However,the effects of intensive management on soil respiration(RS)components remain unclear.This study aimed to evaluate the changes in different RScomponents(root,mycorrhizal,and free-living microorganism respiration)in Moso bamboo forests under extensive and intensive management practices.A1-year in-situ microcosm experiment was conducted to quantify the RScomponents in Moso bamboo forests under the two management practices using mesh screens of varying sizes.The results showed that the total RSand its components exhibited similar seasonal variability between the two management practices.Compared with extensive management,intensive management significantly increased cumulative respiration from mycorrhizal fungi by 36.73%,while decreased cumulative respiration from free-living soil microorganisms by 8.97%.Moreover,the abundance of arbuscular mycorrhizal fungi(AMF)increased by 43.38%,but bacterial and fungal abundances decreased by 21.65%and 33.30%,respectively,under intensive management.Both management practices significantly changed the bacterial community composition,which could be mainly explained by soil pH and available potassium.Mycorrhizal fungi and intensive management affected the interrelationships between bacterial members.Structural equation modeling indicated that intensive management changed the cumulative RSby elevating AMF abundance and lowering bacterial abundance.We concluded that intensive management reduced the microbial respiration-derived C loss,but increased mycorrhizal respiration-derived C loss.展开更多
Understanding the role of microbes in the solubility of cadmium(Cd) is of fundamental importance for remediation of Cd toxicity. The present study aimed to identify the microbes that involved in regulating Cd solubili...Understanding the role of microbes in the solubility of cadmium(Cd) is of fundamental importance for remediation of Cd toxicity. The present study aimed to identify the microbes that involved in regulating Cd solubility and to reveal possible mechanisms. Therefore,microbial communities were investigated through high-throughput sequencing approach, the molecular ecological network was constructed and metagenomes were predicted. Our results indicated that redox conditions affected both the solubility of soil Cd and the microbial communities. Anaerobic microbes, such as Anaerolineaceae, did not only play important roles in shaping the microbial community in soils, but might also be involved in regulating the Cd solubility. Two possible mechanisms that how Anaerolineaceae involved in Cd solubility are(1) Anaerolineaceae are important organic matter degraders under anoxic conditions and(2) Anaerolineaceae can co-exist with methane metabolism microbes, while methane metabolism promotes the precipitation of soluble Cd. Thus, application of Anaerolineaceae in bioremediation of soil Cadmium contamination is a potential approach. The study provided a novel insight into the role of microbial community in the regulation of Cd solubility under different redox conditions, and suggested a potential approach for the remediation of soil Cd contamination.展开更多
Two anaerobic membrane bioreactors(AnMBRs)equipped with different membrane pore size(0.4 or 0.05μm)were operated at 25℃and fed with domestic wastewater.The hydraulic retention time(HRT)of the reactors was shortened....Two anaerobic membrane bioreactors(AnMBRs)equipped with different membrane pore size(0.4 or 0.05μm)were operated at 25℃and fed with domestic wastewater.The hydraulic retention time(HRT)of the reactors was shortened.The microbial communities of the two AnMBRs were investigated by 16S rRNA gene amplicon sequencing to see the effects of HRT.The predominant Archaea was an aceticlastic methanogen Methanosaeta.The composition of hydrogenotrophic methanogens changed with the HRTs:the population of Methanobacterium was higher for longer HRTs,whereas the population of unclassified Methanoregulaceae was higher for shorter HRTs.The Anaerolineae,Bacteroidia and Clostridia bacteria were dominant in both of the reactors,with a combined relative abundance of over 55%.The relative abundance of Anaerolineae was proportional to the biogas production performance.The change in the population of hydrogenotrophic methanogens or Anaerolineae can be used as an indicator for process monitoring.The sum of the relative abundance of Anaerolineae and Clostridia fluctuated slightly with changes in the HRT in both AnMBRs when the reactor was stably operated.The co-occurrence analysis revealed the relative abundance of the operational taxonomic units belonging to Anaerolineae and Clostridia was functionally equivalent during the treatment of real domestic sewage.A principal coordination analysis revealed that the changes in the microbial community in each reactor were consistent with the change of HRT.In addition,both the HRT and the stability of the process are important factors for maintaining microbial community structures.展开更多
Partial substitution of synthetic nitrogen(N)with organic fertilizers(PSOF)is of great significance in improving soil ecosystem functions in systems that have deteriorated due to the excessive application of chemical ...Partial substitution of synthetic nitrogen(N)with organic fertilizers(PSOF)is of great significance in improving soil ecosystem functions in systems that have deteriorated due to the excessive application of chemical N fertilizer.However,existing studies typically focus on individual soil functions,neglecting the fact that multiple functions occur simultaneously.It remains unclear how PSOF influences multiple soil functions and whether these impacts are related to soil microbial communities.Here,we examined the impacts of partial substitutions(25%–50%)of chemical N fertilizer with organic form(pig manure or municipal sludge)in a vegetable field on soil multifunctionality,by measuring a range of soil functions involving primary production(vegetable yield and quality),nutrient cycling(soil enzyme activities,ammonia volatilization,N leaching,and N runoff),and climate regulation(soil organic carbon sequestration and nitrous oxide emission).We observed that PSOF improved soil multifunctionality,with a 50%substitution of chemical N fertilizer with pig manure being the best management practice;the result was strongly related to the diversities and network complexities of bacteria and fungi.Random forest analysis further revealed that soil multifunctionality was best explained by the bacterial-fungal network complexity,followed by available phosphorus level and bacterial diversity.The PSOF also shifted the composition of bacterial and fungal communities,with increased relative abundances of dominant bacteria phyla,such as Bacteroidetes,Gemmatimonadetes,and Myxococcota,and fungal phyla,such as Basidiomycota and Olpidiomycota.The observed increases in soil multifunctionality were consistent with significant increases in the relative abundances of keystone taxa such as Blastocladiomycota,Chaetomiaceae,and Nocardiopsaceae.Together,these findings indicate that PSOF can enhance interactions within and among microbial communities and that such practices have the potential to improve soil ecosystem multifunctionality and contribute to the development of sustainable agriculture.展开更多
基金Under the auspices of the National Natural Science Foundation of China(No.42430511,U20A2083)the National Key Research and Development Program of China(No.2022YFF1300900)the Science and Technology Development Program of Jilin Province(No.20210509037RQ,20230101348JC)。
文摘Elevation patterns and assembly processes of soil microbial community structures are essential for understanding biogeo-chemical processes in mountain systems.Differences in soil properties caused by elevation gradients can regulate the spatial distribu-tion and network complexity of the community structure.To explore the variations in soil microbial community structures and their as-sembly mechanisms across different elevations of the Changbai Mountains,as well as their responses to environmental factors,we col-lected microbial samples along an elevational gradient(seven elevations containing four vegetation zones)on the western slope of the Changbai Mountains using the method of metagenomic sequencing.The results showed a significant difference(P<0.05)for the Chao1 index across different elevations,but no significant difference was observed for the Shannon and Simpson indices.With increasing elev-ation,the number of nodes and links in the microbial network gradually decreased.Acidobacteria were highly connected to many nodes.The microbial communities indicated a significant distance-decay relationship(P<0.001)and were affected more by stochastic pro-cesses along the elevation gradient.The results of the Structural Equation Model(SEM)showed that elevation had direct significant ef-fect on carbon(C,P<0.01),nitrogen(N,P<0.01),and phosphorus(P,P<0.05)and weak negative effect on their ecological stoi-chiometry.Elevation was one of the major variables contributing to microbial network topology.The contribution of C and N to micro-bial network complexity was higher than that of P.Our study provides valuable insights into the responses of soil microbial communit-ies to elevation variations.
基金supported by Natural Science Foundation of Xiamen,China(No.3502Z20227232)the STS Project of Fujian-CAS(No.2023T3018)Bureau of International Cooperation,Chinese Academy of Sciences(No.322GJHZ2022035MI).
文摘Anammox bacteria in constructed wetlands(CWs)play pivotal role in sustainable nitrogen transformation,yet existing studies lack comprehensive analysis of environmental gradients and microbial interactions,both key factors in anammox bacteria enrichment.This study investigated the mechanisms driving anammox bacteria enrichment in lab-scale simulated CWs treating high-nitrogen wastewater,focusing on bacterial community re-sponses across wetland layers with various strategies,including continuous up-flow influent,nitrogen loading increase,effluent recirculation,intermittent influent,and anammox bacteria inoculation.Results showed that total relative and absolute abundances of anammox bacteria ranged from 0.77%to 12.50%and from 0.13 to 6.46×10^(7) copies/g,respectively.Dissolved oxygen and pH had significant positive correlations with the absolute abundance of anammox bacteria,while organic matter and nitrate negatively impacted their relative abundance.Permutational multivariate analysis of variance indicated that spatial heterogeneity explained more variation in anammox bacteria abundance(43.44%)compared to operational strategies(8.58%).In terms of microbial interactions,60 dominant species exhibited potential correlations with anammox bacteria,comprising 170 interactions(105 positive and 65 negative),which suggested that anammox bacteria generally foster cooperative relationships with dominant bacteria.Notably,significant interspecies interactions were observed between Candidatus Kuenenia(dominant anammox bacteria in CWs)and species within the genera Chitinivibrio-nia and Anaerolineaceae,suggesting that microbial interactions primarily manifest as indirect facilitative effects rather than direct mutualistic relationships.Given that the Normalized Stochasticity Ratio in CWs were<50%,this study inferred that environmental gradients have greater influence on anammox bacteria than microbial interactions.
基金Supported by the Major Program of Institute for Eco-environmental Research of Sanyang Wetland(No.SY2022ZD-1001-05)。
文摘Pollution from heavy metals(HMs)(Cd,As,Cr,and Ni,etc.)has become a serious environmental issue in urban wetland ecosystems with more and more attention.Previous studies conducted in agricultural soils,rivers,and lakes demonstrated that microbial communities exhibit a response to HM pollution.Yet,little is known about the response of microbial communities to HM pollution in urban wetland ecosystems.We examined how heavy metals affect the stability of the microbial networks in the sediments of Sanyang wetland,Wenzhou,China.Key environmental parameters,including HMs,TC(total carbon),TN(total nitrogen),TP(total phosphorus),S,and pH,varied profoundly between moderately and heavily polluted areas in shaping microbial communities.Specifically,the microbial community composition in moderately polluted sites correlated significantly(P<0.05)with Ni,Cu,Cd and TP,whereas in heavily polluted sites,they correlated significantly with Cd,TN,TP,and S.Results show that the heavily polluted sites demonstrated more intricate and more stable microbial networks than those of the moderately polluted area.The heavily polluted sites exhibited higher values for various network parameters including total nodes,total links,average degree,average clustering coefficient,connectance,relative modularity,robustness,and cohesion.Moreover,the structural equation modeling analysis demonstrated a positive correlation between the stability of microbial networks and Cd,TN,TP,and S in heavily polluted sites.Conversely,in moderately polluted sites,the correlation was positively linked to Cd,Ni,and sediment pH.It implies that Cd could potentially play a crucial role in affecting the stability of microbial networks.This study shall enhance our comprehension of microbial co-occurrence patterns in urban wetland ecosystems and offer insights into the ways in which microbial communities respond to environmental factors in varying levels of HM pollution.
基金funded by the Major Science and Technology Projects of Xinjiang Uygur Autonomous Region(2022A02007-4)the Xinjiang Uygur Autonomous Region Natural Science Foundation Youth Project(2024D01B31)the Graduate Student Research Innovation Project of Xinjiang Agricultural University(XJAUGRI2024033).
文摘Continuous cropping can lead to soil environment deterioration,cause plant health problems,and reduce crop productivity.However,the response mechanisms of soil microbial co-occurrence patterns to the duration of continuous melon cropping remain poorly understood.Here,we employed the metagenomic techniques to comparatively investigate the bulk and rhizosphere soil microbial communities of major melon-producing regions(where the duration of continuous melon cropping ranges from 1 to 30 a)in the eastern and southern parts of Xinjiang Uygur Autonomous Region,China.The results showed that soil pH clearly decreased with increasing melon cropping duration,while soil electrical conductivity(EC)and the other soil nutrient indices increased with increasing melon cropping duration(with the exception of AN and TK in the southern melon-producing region).The most dominant bacterial phyla were Proteobacteria and Actinobacteria,and the most abundant fungal phyla were Ascomycota and Mucoromycota.Redundancy analysis(RDA)indicated that soil pH and EC had no significant effects on the bacterial communities.However,after many years of continuous melon cropping in the southern melon-producing region,fungal communities were significantly negatively correlated with soil pH and significantly positively correlated with soil EC(P<0.050).Co-occurrence network analysis showed that continuous melon cropping increased the complexity but decreased the connectivity of the cross-domain microbial networks.Moreover,the enrichment patterns of microorganisms in the main microbial network modules varied significantly with the duration of continuous melon cropping.Based on the analysis of keystone taxa,we found that continuous melon cropping increased some plant pathogens(e.g.,Fusarium and Stagonospora)but decreased beneficial bacteria(e.g.,Mesorhizobium and Pseudoxanthomonas).In conclusion,this study has greatly enhanced the understanding of the effects of continuous melon cropping on alterations in the microbial community structure and ecological networks in Xinjiang.
基金funded by the National Key Research and Development Program of China (2022YFD1500100)the Strategic Priority Research Program of the Chinese Academy of Sciences (XDA28070100)+1 种基金the National Natural Science Foundation of China (41807085)the earmarked fund for China Agriculture Research System (CARS04)。
文摘Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be the key to this process,but research into their role in subsoil amelioration is limited. Therefore, a field experiment was conducted in 2018 in a region in northeastern China with Hapli-Udic Cambisol using four treatments: conventional tillage(CT, tillage to a depth of 15 cm with no straw incorporation), straw incorporation with conventional tillage(SCT, tillage to a depth of 15 cm),inversion tillage(IT, tillage to a depth of 35 cm) and straw incorporation with inversion tillage(SIT, tillage to a depth of 35 cm). The soils were managed by inversion to a depth of 15 or 35 cm every year after harvest. The results indicated that SIT improved soil multi-nutrient cycling variables and increased the availability of key nutrients such as soil organic carbon, total nitrogen, available nitrogen, available phosphorus and available potassium in both the topsoil and subsoil.In contrast to CT and SCT, SIT created a looser microbial network structure but with highly centralized clusters by reducing the topological properties of average connectivity and node number, and by increasing the average path length and the modularity. A Random Forest analysis found that the average path length and the clustering coefficient were the main determinants of soil multi-nutrient cycling. These findings suggested that SIT can be an effective option for improving soil multi-nutrient cycling and the structure of microbial networks, and they provide crucial information about the microbial strategies that drive the decomposition of straw in Hapli-Udic Cambisol.
基金supported by the China National Key R&D Program during the 14th Five-year Plan Period(2022YFD1901603)。
文摘Sugarcane/soybean intercropping with reduced nitrogen addition is an important sustainable agricultural pattern that can alter soil ecological functions,thereby affecting straw decomposition in the soil.However,the mechanisms underlying changes in soil organic carbon(SOC)composition and microbial communities during straw decomposition under long-term intercropping with reduced nitrogen addition remain unclear.In this study,we conducted an in-situ microplot incubation experiment with^(13)C-labeled soybean straw residue addition in a two-factor(cropping pattern:sugarcane monoculture(MS)and sugarcane/soybean intercropping(SB);nitrogen addition levels:reduced nitrogen addition(N1)and conventional nitrogen addition(N2))long-term experimental field plot.The results showed that the SBN1 treatment significantly increased the residual particulate organic carbon(POC)and residual microbial biomass carbon(MBC)contents during straw decomposition,and the straw carbon in soil was mainly conserved as POC.Straw addition changed the structure and reduced the diversity of the soil microbial community,but microbial diversity gradually recovered with decomposition time.During straw decomposition,the intercropping pattern significantly increased the relative abundances of Firmicutes and Ascomycota.In addition,straw addition reduced microbial network complexity in the sugarcane/soybean intercropping pattern but increased it in the sugarcane monoculture pattern.Nevertheless,microbial network complexity remained higher in the SBN1 treatment than in the MSN1 treatment.In general,the SBN1 treatment significantly increased the diversity of microbial communities and the relative abundance of microorganisms associated with organic matter decomposition,and the changes in microbial communities were mainly driven by the residual labile SOC fractions.These findings suggest that more straw carbon can be sequestered in the soil under sugarcane/soybean intercropping with reduced nitrogen addition to maintain microbial diversity and contribute to the development of sustainable agriculture.
基金supported by the National Key Research and Development Program of China(Nos.2018YFA0901100 and 2018YFC1801103)the National Natural Science Foundation of China(Nos.22206202 and 22076216)。
文摘The problem of soil polycyclic aromatic hydrocarbon(PAH)pollution in coking plant sites has been widely studied in recent years,but there is a lack of research on the correlation between soil microorganisms,soil metabolomics,and soil properties.Thus,in this study,the long-term impact of coke combustion on soil microbial community structure,enzyme activities,and metabolic pathways within a former coking plant site was investigated.Soil samples were collected from both the coking production area(CA group)and office area(OLA group),approximately 0 to 20 cm in depth.Compared with OLA group,elevated levels of 16 PAHs in the list of US EPA were detected by gas chromatography-mass spectrometry in the CA group.Several dominant microorganisms,such as Altererythrobacter,Lysobacter,and Sulfurifustis,were identified by 16 s ribosomal DNA sequencing in the CA group.The fatty acid biosynthesis pathway exhibited specific inhibition,while the phenylalanine metabolic pathwaywas promoted in response to PAH stress.Long-term PAH exposure led to the inhibition of soil urease activity.The co-occurrence network ofmicroorganisms revealed intricate patterns of co-metabolism and co-adaptation within complex bacterial communities,facilitating their adaptation to and decomposition of soil-borne PAHs.This research could provide valuable insights into the community characteristics andmetabolic mechanisms of microorganisms inhabiting PAH-polluted soil within coking plant sites.The findings enhance our understanding of the indigenous soil microbiome and its intricate network dynamics under the persistent stress of PAHs,contributing to a more comprehensive knowledge of soil ecosystems in such environments.
基金supported by the National Natural Science Foundation of China(No.U20A2047)the Key Research and Development Project for Tibet Autonomous Region(No.XZ202201ZY0003N)+2 种基金the National Key Research and Development Program of China(No.2022YFD1901402)the Lasa Science and Technology Bureau(No.LSKJ202206)the Foundation of Graduate Research and Innovation in Chongqing(No.CYB22127).
文摘The land application of livestock manure has been widely acknowledged as a beneficial approach for nutrient recycling and environmental protection.However,the impact of residual antibiotics,a common contaminant of manure,on the degradation of organic compounds and nutrient release in Eutric Regosol is not well understood.Here,we studied,how oxytetracycline(OTC)and ciprofloxacin(CIP)affect the decomposition,microbial community structure,extracellular enzyme activities and nutrient release from cattle and pig manure using litterbag incubation experiments.Results showed that OTC and CIP greatly inhibited livestock manure decomposition,causing a decreased rate of carbon(28%-87%),nitrogen(15%-44%)and phosphorus(26%-43%)release.The relative abundance of gramnegative(G-)bacteria was reduced by 4.0%-13%while fungi increased by 7.0%-71%during a 28-day incubation period.Co-occurrence network analysis showed that antibiotic exposure disrupted microbial interactions,particularly among G-bacteria,G+bacteria,and actinomycetes.These changes in microbial community structure and function resulted in decreased activity of urease,β-1,4-N-acetyl-glucosaminidase,alkaline protease,chitinase,and catalase,causing reduced decomposition and nutrient release in cattle and pig ma-nures.These findings advance our understanding of decomposition and nutrient recycling from manure-contaminated antibiotics,which will help facilitate sustainable agricultural production and soil carbon sequestration.
基金supported by Guangxi Key Research and Development Program(No.AB24010136)the Pre-project from Guangxi Bureau of Geology and Mineral Exploration and Development(No.2024051)Guangxi Geochemistry and Environmental Restoration and Management Research Talent Highland.
文摘Evaluating petroleum contamination risk and implementing remedial measures in agricultural soil rely on indicators such as soil metal(loid)s and microbiome alterations.However,the response of these indicators to petroleum contamination remains under-investigated.The present study investigated the soil physicochemical features,metal(loid)s,microbial communities and networks,and phospholipid fatty acids(PLFAs)community structures in soil samples collected from long-(LC)and short-term(SC)petroleum-contaminated oil fields.The results showed that petroleum contamination increased the levels of soil total petroleum hydrocarbon,carbon,nitrogen,sulfur,phosphorus,calcium,copper,manganese,lead,and zinc,and decreased soil pH,microbial biomass,bacterial and fungal diversity.Petroleum led to a rise in the abundances of soil Proteobacteria,Ascomycota,Oleibacter,and Fusarium.Network analyses showed that the number of network links(Control vs.SC,LC=1181 vs.700,1021),nodes(Control vs.SC,LC=90 vs.71,83)and average degree(Control vs.SC,LC=26.244 vs.19.718,24.602)recovered as the duration of contamination increased.Petroleum contamination also reduced the concentration of soil PLFAs,especially bacterial.These results demonstrate that brief exposure to high levels of petroleum contamination alters the physicochemical characteristics of the soil as well as the composition of soil metal(loid)s andmicroorganisms,leading to a less diverse soilmicrobial network that is more susceptible to damage.Future research should focus on the culturable microbiome of soil under petroleum contamination to provide a theoretical basis for further remediation.
基金supported by the Foreign Experts Project of China(No.G2022145002 L)the National Natural Science Foundation of China(No.31571702)the Priority Academic Program Development of Jiangsu Higher Education Institutions,China(No.809001).
文摘The taxonomic composition and function of endophytic microbial communities in plants are strongly influenced by environmental changes. The impact of nitrogen (N) fertilization on the diversity of microbial communities in the underground parts of plants that are tolerant of barren environments throughout their growth period remains largely unexplored. Here, by high-throughput sequencing technology, an experiment was performed at the Pailou Experimental Station of Nanjing Agricultural University, where the soil is a yellow-brown soil, to analyze fluctuations in the microbial communities of Jerusalem artichoke (Helianthus tuberosus L.) underground parts in two treatments, application of N, P, and K fertilizers (NPK) and application of only P and K fertilizers (PK), from March 2018 to January 2019. Total, nitrate, and ammonium N contents of soil and Jerusalem artichoke were significantly decreased in the PK treatment. The bacterial community, particularly Acinetobacter, dominated throughout the growth period, peaking in November and accounting for 88.9% and 87.3%, respectively, in the NPK and PK treatments. The absence of N fertilizer (i.e., NP treatment) had minimal effect on the bacterial community composition compared to the fungal community composition. The α-diversity of bacteria in tubers was not substantial, while that in roots was dramatically reduced in July and September in the NP treatment. Notably, the α-diversity of fungal species exhibited more pronounced seasonal variations than that of bacteria under both fertilizer conditions. The lack of N fertilizer lessened the complexity of bacterial network structure and reduced bacterial community similarity (β-diversity) in different months. Interestingly, the β-diversity and network structure of fungal community in the underground tissues of Jerusalem artichoke showed less sensitivity to N fertilizer compared to those of bacterial community. This study improves the understanding of the dynamic response of endophytic microorganisms to N fertilizer application in the underground parts of Jerusalem artichoke tolerant to barren environments.
基金This work was supported by the DGAPA-UNAM(PAPIIT project,No.IN102721)the support from CONAHCYT through the Investigadoras e Investigadores por Mexico program(Researcher ID 6407,Project 265).
文摘Anaerobic oxidation of methane(AOM)can contribute to reducing methane emissions in landfills;however,the AOM rates vary depending on the inoculum source.This study addressed the capacity of AOM of a fermentative microbial community derived from a reactor treatingmunicipal solidwastes.First,the inoculum’s autotrophic capacitywas verified using a gasmixture of 75% CO_(2) and 25% H_(2).Results demonstrated that the fermentative microbial community reached amaximum CO_(2) consumption rate of 22.5±1.2 g CO_(2)/(m^(3)·h),obtaining acetate as the main product.Then,the inoculum was grown on a gas mixture of 50%CH_(4),35%CO_(2),and 15%N_(2),using iron(Fe^(3+))as the electron acceptor.The AOM rates increased over time and peaked at 3.1±0.9 g CH_(4)/(m^(3)·h)by 456 h with the simultaneous consumption of CO_(2).Acetate was the main product,with amaximum concentration of 180±9mg/L.By 408 h,a bacterial cluster of indicator species correlated with the AOM rates,including to Rhodobactereceae(r=0.80),Oceanicola(r=0.80),Propionicicella(r=0.77),Christensenellaceae(r=0.58),Oscillospiraceae(r=0.53),Mobilitalea(r=0.66),Hungateiclostridiaceae(r=0.46),and Izemoplasmatales(r=0.77).Methanosarcina,Methanobacterium,and Methanoculleus correlated with the AOM and CO_(2) consumption rates.A co-occurrence network analysis showed that Methanosarcina positively interacted with syntrophic bacteria like Christensenellaceae and Acinetobacter and diverse heterotrophic bacteria.This study demonstrated the feasibility of obtaining a CH_(4)-oxidizing microbial community in 16 days,exhibiting AOM rates higher than those reported for soils.
基金supported by the National Natural Science Foundation of China(No.31860023)the Light of West China Program of Chinese Academic of Sciences(No.[2019]90)+1 种基金the Basic Research Fund of Guangxi Academy of Sciences,China(No.CQZ-D-1904)the Fundamental Research Fund of the Guangxi Institute of Botany,China(Guizhiye Nos.24010 and 24012).
文摘Soil nitrogen(N)cycling is one of the most critical biogeochemical cycles,and N cycling-related microorganisms are the primary driving force behind N cycling in natural environments.The large karst sinkholes in China,known as Tiankengs,harbor abundant unique biological resources due to their particular environmental conditions.However,N cycling-related microorganisms in Tiankeng soils and their connection to ecosystem processes remain poorly studied.In this study,we investigated the distribution patterns and genomic diversity of N cycling-related microorganisms both inside and outside the Luohun cave Tiankeng in Guizhou,China,utilizing high-throughput sequencing and other techniques.The results indicated that the diversities and abundances of denitrifying bacteria,ammonia-oxidizing bacteria,and ammonia-oxidizing archaea communities inside the Tiankeng were higher than those outside the Tiankeng;however,the microbial network relationships were more fragile inside the Tiankeng.The most abundant species of denitrifying bacteria,ammonia-oxidizing bacteria,and ammonia-oxidizing archaea inside the Tiankeng were unclassified_p_Proteobacteria(47.8%),unclassified_k_norank(AOB,OTU121,37.3%),and unclassified_g_norank_f_norank_o_norank_c_environmental_samples(55.7%),respectively;outside the Tiankeng,they were unclassified_k_norank_d_bacteria(54.5%),unclassified_k_norank(AOB,OTU121,48.1%),and unclassified_k_norank(AOA,OTU70,49.6%),respectively.Additionally,the N content inside the Tiankeng was significantly lower(P<0.05)under the influence of these N cycling-related microorganisms,whereas the nutrient contents were higher than that outside the Tiankeng.To the best of our knowledge,this is the first report on the crucial microbial distribution patterns driving N cycling in karst Tiankengs and provides new insights into the structure and potential functions of N cycling-related microorganisms in the unique ecological environment of fragile Tiankeng ecosystems.
基金the National Natural Science Foundation of China(No.81573150)Military Key Discipline Construction Projects of China(No.HL21JD1206).
文摘Objective:This study investigated trends in the study of phytochemical treatment of post-traumatic stress disorder(PTSD).Methods:The Web of Science database(2007-2022)was searched using the search terms“phytochemicals”and“PTSD,”and relevant literature was compiled.Network clustering co-occurrence analysis and qualitative narrative review were conducted.Results:Three hundred and one articles were included in the analysis of published research,which has surged since 2015 with nearly half of all relevant articles coming from North America.The category is dominated by neuroscience and neurology,with two journals,Addictive Behaviors and Drug and Alcohol Dependence,publishing the greatest number of papers on these topics.Most studies focused on psychedelic intervention for PTSD.Three timelines show an“ebb and flow”phenomenon between“substance use/marijuana abuse”and“psychedelic medicine/medicinal cannabis.”Other phytochemicals account for a small proportion of the research and focus on topics like neurosteroid turnover,serotonin levels,and brain-derived neurotrophic factor expression.Conclusion:Research on phytochemicals and PTSD is unevenly distributed across countries/regions,disciplines,and journals.Since 2015,the research paradigm shifted to constitute the mainstream of psychedelic research thus far,leading to the exploration of botanical active ingredients and molecular mechanisms.Other studies focus on anti-oxidative stress and anti-inflammation.
基金supported by the National Natural Science Foundation of China(U22A20501)the National Key Research and Development Plan of China(2022YFD1500601)+4 种基金the National Science and Technology Fundamental Resources Investigation Program of China(2018FY100304)the Strategic Priority Research Program of the Chinese Academy of Sciences(XDA28090200)the Liaoning Province Applied Basic Research Plan Program,China(2022JH2/101300184)the Shenyang Science and Technology Plan Program,China(21-109-305)the Liaoning Outstanding Innovation Team,China(XLYC2008015)。
文摘Land use influences soil biota community composition and diversity,and then belowground ecosystem processes and functions.To characterize the effect of land use on soil biota,soil nematode communities in crop land,forest land and fallow land were investigated in six regions of northern China.Generic richness,diversity,abundance and biomass of soil nematodes was the lowest in crop land.The richness and diversity of soil nematodes were 28.8and 15.1%higher in fallow land than in crop land,respectively.No significant differences in soil nematode indices were found between forest land and fallow land,but their network keystone genera composition was different.Among the keystone genera,50%of forest land genera were omnivores-predators and 36%of fallow land genera were bacterivores.The proportion of fungivores in forest land was 20.8%lower than in fallow land.The network complexity and the stability were lower in crop land than forest land and fallow land.Soil pH,NH_(4)^(+)-N and NO_(3)^(–)-N were the major factors influencing the soil nematode community in crop land while soil organic carbon and moisture were the major factors in forest land.Soil nematode communities in crop land influenced by artificial management practices were more dependent on the soil environment than communities in forest land and fallow land.Land use induced soil environment variation and altered network relationships by influencing trophic group proportions among keystone nematode genera.
基金Funded by Ningbo Natural Science Foundation (No.2006A610016)
文摘Classifying the texture of granules in 2D images has aroused manifold research atten-tion for its technical challenges in image processing areas.This letter presents an aggregate texture identification approach by jointly using Gray Level Co-occurrence Probability(GLCP) and BP neural network techniques.First, up to 8 GLCP-associated texture feature parameters are defined and computed, and these consequent parameters next serve as the inputs feeding to the BP neural network to calculate the similarity to any of given aggregate texture type.A finite number of aggregate images of 3 kinds, with each containing specific type of mineral particles, are put to the identification test, experimentally proving the feasibility and robustness of the proposed method.
基金supported by National Natural Science Foundation of China(31730091,32372900,32072743)Natural Science Foundation of Sichuan Province(2023NSFSC0237)Major Science and Technology Projects in Sichuan Province(2021ZDZX0009)。
文摘Background Diarrhea remains a major health concern in both young animals and humans.Prevotella spp.,a dominant commensal genus in the healthy porcine gut,becomes increasingly abundant following weaning,suggesting a potential role during this critical transitional period.However,its involvement in post-weaning diarrhea remains poorly understood.Here,we aim to elucidate the role and underlying mechanisms of Prevotella in alleviating diarrhea in weaned piglets.Results To model unsanitary housing conditions,piglets were housed in uncleaned pens containing residual fecal matter from previous occupants and exposed to cold stress by maintaining the ambient temperature at 19℃,below the optimal 28℃.Under these conditions,piglets were orally administered either a blank medium(CON,n=10×2)or Prevotella copri at 1×10^(8)CFU(Pc,n=10×2)on d 1,3,and 5.After 28 d,cold stress induced a diarrhea incidence of 33.45%in the CON group,while P.copri supplementation significantly reduced the diarrhea rate to 19.73%.Treatment with P.copri markedly improved intestinal morphology in the small intestine,decreased serum levels of lipopolysaccharide(LPS)and intestinal fatty acid-binding protein(i-FABP),and enhanced total antioxidant capacity(T-AOC)and catalase(CAT)activity.Quantitative PCR and 16S rRNA gene sequencing revealed that P.copri significantly increased the colonic abundance of Prevotella,reshaping both the composition and functional profile of the gut microbiota.Moreover,P.copri enhanced the modularity and robustness of microbial ecological networks.Untargeted metabolomic profiling of colonic contents revealed a significant enrichment of metabolites involved in the arachidonic acid pathway following P.copri supplementation.In parallel,untargeted metabolomics of P.copri culture supernatants identified differential metabolic pathways including metabolic pathways,biosynthesis of secondary metabolites,and biosynthesis of antibiotics.In vitro assays demonstrated that P.copri-derived metabolites inhibited the growth of three common porcine intestinal pathogens.Furthermore,both P.copri metabolites and arachidonic acid enhanced intestinal barrier integrity and suppressed TNF-α-induced inflammation and apoptosis in Caco-2 cells through activation of the AHR–Nrf2 signaling pathway.Conclusions These findings highlight the role of P.copri in maintaining gut homeostasis and provide new insights into microbiota-based interventions for early-life intestinal disorders.
基金financially supported by the National Natural Science Foundation of China(Nos.31971631,41977083,and 41671252)。
文摘Intensive management is known to markedly alter soil carbon(C)storage and turnover in Moso bamboo forests compared with extensive management.However,the effects of intensive management on soil respiration(RS)components remain unclear.This study aimed to evaluate the changes in different RScomponents(root,mycorrhizal,and free-living microorganism respiration)in Moso bamboo forests under extensive and intensive management practices.A1-year in-situ microcosm experiment was conducted to quantify the RScomponents in Moso bamboo forests under the two management practices using mesh screens of varying sizes.The results showed that the total RSand its components exhibited similar seasonal variability between the two management practices.Compared with extensive management,intensive management significantly increased cumulative respiration from mycorrhizal fungi by 36.73%,while decreased cumulative respiration from free-living soil microorganisms by 8.97%.Moreover,the abundance of arbuscular mycorrhizal fungi(AMF)increased by 43.38%,but bacterial and fungal abundances decreased by 21.65%and 33.30%,respectively,under intensive management.Both management practices significantly changed the bacterial community composition,which could be mainly explained by soil pH and available potassium.Mycorrhizal fungi and intensive management affected the interrelationships between bacterial members.Structural equation modeling indicated that intensive management changed the cumulative RSby elevating AMF abundance and lowering bacterial abundance.We concluded that intensive management reduced the microbial respiration-derived C loss,but increased mycorrhizal respiration-derived C loss.
基金supported by the National Natural Science Foundation of China (Nos.31570113 and 41573072)the Scientific Research Fund of Hunan Provincial Education Department in China (No.17 K035)+1 种基金Chinese Postdoctoral Funding Planthe Central South University Postdoctoral Research Funding for D.M.(No.201699)
文摘Understanding the role of microbes in the solubility of cadmium(Cd) is of fundamental importance for remediation of Cd toxicity. The present study aimed to identify the microbes that involved in regulating Cd solubility and to reveal possible mechanisms. Therefore,microbial communities were investigated through high-throughput sequencing approach, the molecular ecological network was constructed and metagenomes were predicted. Our results indicated that redox conditions affected both the solubility of soil Cd and the microbial communities. Anaerobic microbes, such as Anaerolineaceae, did not only play important roles in shaping the microbial community in soils, but might also be involved in regulating the Cd solubility. Two possible mechanisms that how Anaerolineaceae involved in Cd solubility are(1) Anaerolineaceae are important organic matter degraders under anoxic conditions and(2) Anaerolineaceae can co-exist with methane metabolism microbes, while methane metabolism promotes the precipitation of soluble Cd. Thus, application of Anaerolineaceae in bioremediation of soil Cadmium contamination is a potential approach. The study provided a novel insight into the role of microbial community in the regulation of Cd solubility under different redox conditions, and suggested a potential approach for the remediation of soil Cd contamination.
基金supported by Grant-in-Aids for JSPS Fellows(KAKENHI Grant nos.JP19J11931 and JP19J12023)Scientific Research(B)(KAKENHI Grant no.JP18H01564)+1 种基金Scientific Research(A)(KAKENHI Grant no.JP19H01160)from Japan Society for the Promotion of Scienceby Ministry of the Environment,Japan(Low Carbon Technology Research,Development and Demonstration Program:Innovative sewage treatment system for energy saving and energy production,20172019)。
文摘Two anaerobic membrane bioreactors(AnMBRs)equipped with different membrane pore size(0.4 or 0.05μm)were operated at 25℃and fed with domestic wastewater.The hydraulic retention time(HRT)of the reactors was shortened.The microbial communities of the two AnMBRs were investigated by 16S rRNA gene amplicon sequencing to see the effects of HRT.The predominant Archaea was an aceticlastic methanogen Methanosaeta.The composition of hydrogenotrophic methanogens changed with the HRTs:the population of Methanobacterium was higher for longer HRTs,whereas the population of unclassified Methanoregulaceae was higher for shorter HRTs.The Anaerolineae,Bacteroidia and Clostridia bacteria were dominant in both of the reactors,with a combined relative abundance of over 55%.The relative abundance of Anaerolineae was proportional to the biogas production performance.The change in the population of hydrogenotrophic methanogens or Anaerolineae can be used as an indicator for process monitoring.The sum of the relative abundance of Anaerolineae and Clostridia fluctuated slightly with changes in the HRT in both AnMBRs when the reactor was stably operated.The co-occurrence analysis revealed the relative abundance of the operational taxonomic units belonging to Anaerolineae and Clostridia was functionally equivalent during the treatment of real domestic sewage.A principal coordination analysis revealed that the changes in the microbial community in each reactor were consistent with the change of HRT.In addition,both the HRT and the stability of the process are important factors for maintaining microbial community structures.
基金supported by the National Natural Science Foundation of China(Nos.41961124004,42207361,and42061124001)。
文摘Partial substitution of synthetic nitrogen(N)with organic fertilizers(PSOF)is of great significance in improving soil ecosystem functions in systems that have deteriorated due to the excessive application of chemical N fertilizer.However,existing studies typically focus on individual soil functions,neglecting the fact that multiple functions occur simultaneously.It remains unclear how PSOF influences multiple soil functions and whether these impacts are related to soil microbial communities.Here,we examined the impacts of partial substitutions(25%–50%)of chemical N fertilizer with organic form(pig manure or municipal sludge)in a vegetable field on soil multifunctionality,by measuring a range of soil functions involving primary production(vegetable yield and quality),nutrient cycling(soil enzyme activities,ammonia volatilization,N leaching,and N runoff),and climate regulation(soil organic carbon sequestration and nitrous oxide emission).We observed that PSOF improved soil multifunctionality,with a 50%substitution of chemical N fertilizer with pig manure being the best management practice;the result was strongly related to the diversities and network complexities of bacteria and fungi.Random forest analysis further revealed that soil multifunctionality was best explained by the bacterial-fungal network complexity,followed by available phosphorus level and bacterial diversity.The PSOF also shifted the composition of bacterial and fungal communities,with increased relative abundances of dominant bacteria phyla,such as Bacteroidetes,Gemmatimonadetes,and Myxococcota,and fungal phyla,such as Basidiomycota and Olpidiomycota.The observed increases in soil multifunctionality were consistent with significant increases in the relative abundances of keystone taxa such as Blastocladiomycota,Chaetomiaceae,and Nocardiopsaceae.Together,these findings indicate that PSOF can enhance interactions within and among microbial communities and that such practices have the potential to improve soil ecosystem multifunctionality and contribute to the development of sustainable agriculture.
