The advantages of genome selection(GS) in animal and plant breeding are self-evident.Traditional parametric models have disadvantage in better fit the increasingly large sequencing data and capture complex effects acc...The advantages of genome selection(GS) in animal and plant breeding are self-evident.Traditional parametric models have disadvantage in better fit the increasingly large sequencing data and capture complex effects accurately.Machine learning models have demonstrated remarkable potential in addressing these challenges.In this study,we introduced the concept of mixed kernel functions to explore the performance of support vector machine regression(SVR) in GS.Six single kernel functions(SVR_L,SVR_C,SVR_G,SVR_P,SVR_S,SVR_L) and four mixed kernel functions(SVR_GS,SVR_GP,SVR_LS,SVR_LP) were used to predict genome breeding values.The prediction accuracy,mean squared error(MSE) and mean absolute error(MAE) were used as evaluation indicators to compare with two traditional parametric models(GBLUP,BayesB) and two popular machine learning models(RF,KcRR).The results indicate that in most cases,the performance of the mixed kernel function model significantly outperforms that of GBLUP,BayesB and single kernel function.For instance,for T1 in the pig dataset,the predictive accuracy of SVR_GS is improved by 10% compared to GBLUP,and by approximately 4.4 and 18.6% compared to SVR_G and SVR_S respectively.For E1 in the wheat dataset,SVR_GS achieves 13.3% higher prediction accuracy than GBLUP.Among single kernel functions,the Laplacian and Gaussian kernel functions yield similar results,with the Gaussian kernel function performing better.The mixed kernel function notably reduces the MSE and MAE when compared to all single kernel functions.Furthermore,regarding runtime,SVR_GS and SVR_GP mixed kernel functions run approximately three times faster than GBLUP in the pig dataset,with only a slight increase in runtime compared to the single kernel function model.In summary,the mixed kernel function model of SVR demonstrates speed and accuracy competitiveness,and the model such as SVR_GS has important application potential for GS.展开更多
Panicle swarm optimization （PSO） is an optimization algorithm based on the swarm intelligent principle. In this paper the modified PSO is applied to a kernel principal component analysis （ KPCA ） for an optimal ke...Panicle swarm optimization （PSO） is an optimization algorithm based on the swarm intelligent principle. In this paper the modified PSO is applied to a kernel principal component analysis （ KPCA ） for an optimal kernel function parameter. We first comprehensively considered within-class scatter and between-class scatter of the sample features. Then, the fitness function of an optimized kernel function parameter is constructed, and the particle swarm optimization algorithm with adaptive acceleration （CPSO） is applied to optimizing it. It is used for gearbox condi- tion recognition, and the result is compared with the recognized results based on principal component analysis （PCA）. The results show that KPCA optimized by CPSO can effectively recognize fault conditions of the gearbox by reducing bind set-up of the kernel function parameter, and its results of fault recognition outperform those of PCA. We draw the conclusion that KPCA based on CPSO has an advantage in nonlinear feature extraction of mechanical failure, and is helpful for fault condition recognition of complicated machines.展开更多
A SVMs (Support Vector Machines) based method to identify Chinese place names is presented. In our approach, place name candidate is located according to a rational forming assumption, then SVMs based identification s...A SVMs (Support Vector Machines) based method to identify Chinese place names is presented. In our approach, place name candidate is located according to a rational forming assumption, then SVMs based identification strategy is used to distinguish whether one candidate is true place name or not. Referring to linguistic knowledge, basic semanteme of a contextual word and frequency information of words inside place name candidate are selected as features in our methodology. So dimension in the feature space is reduced dramatically and processing procedure is performed more efficiently. Result of open testing on unregistered place names achieves F-measure 83.25 in 8.17 million words news based on this project.展开更多
基金supported by the China Agriculture Research System of MOF and MARAthe National Natural Science Foundation of China (31872337 and 31501919)the Agricultural Science and Technology Innovation Project,China (ASTIP-IAS02)。
文摘The advantages of genome selection(GS) in animal and plant breeding are self-evident.Traditional parametric models have disadvantage in better fit the increasingly large sequencing data and capture complex effects accurately.Machine learning models have demonstrated remarkable potential in addressing these challenges.In this study,we introduced the concept of mixed kernel functions to explore the performance of support vector machine regression(SVR) in GS.Six single kernel functions(SVR_L,SVR_C,SVR_G,SVR_P,SVR_S,SVR_L) and four mixed kernel functions(SVR_GS,SVR_GP,SVR_LS,SVR_LP) were used to predict genome breeding values.The prediction accuracy,mean squared error(MSE) and mean absolute error(MAE) were used as evaluation indicators to compare with two traditional parametric models(GBLUP,BayesB) and two popular machine learning models(RF,KcRR).The results indicate that in most cases,the performance of the mixed kernel function model significantly outperforms that of GBLUP,BayesB and single kernel function.For instance,for T1 in the pig dataset,the predictive accuracy of SVR_GS is improved by 10% compared to GBLUP,and by approximately 4.4 and 18.6% compared to SVR_G and SVR_S respectively.For E1 in the wheat dataset,SVR_GS achieves 13.3% higher prediction accuracy than GBLUP.Among single kernel functions,the Laplacian and Gaussian kernel functions yield similar results,with the Gaussian kernel function performing better.The mixed kernel function notably reduces the MSE and MAE when compared to all single kernel functions.Furthermore,regarding runtime,SVR_GS and SVR_GP mixed kernel functions run approximately three times faster than GBLUP in the pig dataset,with only a slight increase in runtime compared to the single kernel function model.In summary,the mixed kernel function model of SVR demonstrates speed and accuracy competitiveness,and the model such as SVR_GS has important application potential for GS.
基金supported by National Natural Science Foundation under Grant No.50875247Shanxi Province Natural Science Foundation under Grant No.2009011026-1
文摘Panicle swarm optimization （PSO） is an optimization algorithm based on the swarm intelligent principle. In this paper the modified PSO is applied to a kernel principal component analysis （ KPCA ） for an optimal kernel function parameter. We first comprehensively considered within-class scatter and between-class scatter of the sample features. Then, the fitness function of an optimized kernel function parameter is constructed, and the particle swarm optimization algorithm with adaptive acceleration （CPSO） is applied to optimizing it. It is used for gearbox condi- tion recognition, and the result is compared with the recognized results based on principal component analysis （PCA）. The results show that KPCA optimized by CPSO can effectively recognize fault conditions of the gearbox by reducing bind set-up of the kernel function parameter, and its results of fault recognition outperform those of PCA. We draw the conclusion that KPCA based on CPSO has an advantage in nonlinear feature extraction of mechanical failure, and is helpful for fault condition recognition of complicated machines.
基金Foundation of China(Grant No.60175020and60673037) and the National High Technology Research and Development Program of China (Grant No.2002AA117010-09).
文摘A SVMs (Support Vector Machines) based method to identify Chinese place names is presented. In our approach, place name candidate is located according to a rational forming assumption, then SVMs based identification strategy is used to distinguish whether one candidate is true place name or not. Referring to linguistic knowledge, basic semanteme of a contextual word and frequency information of words inside place name candidate are selected as features in our methodology. So dimension in the feature space is reduced dramatically and processing procedure is performed more efficiently. Result of open testing on unregistered place names achieves F-measure 83.25 in 8.17 million words news based on this project.
