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Functional generalized estimating equation model to detect glaucomatous visual field progression
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作者 Sanghun Jeong Hwayeong Kim +4 位作者 Sangwoo Moon EunAh Kim Hojin Yang Jiwoong Lee Kouros Nouri-Mahdavi 《International Journal of Ophthalmology(English edition)》 2026年第2期302-311,共10页
AIM:To build a functional generalized estimating equation(GEE)model to detect glaucomatous visual field progression and compare the performance of the proposed method with that of commonly employed algorithms.METHODS:... AIM:To build a functional generalized estimating equation(GEE)model to detect glaucomatous visual field progression and compare the performance of the proposed method with that of commonly employed algorithms.METHODS:Totally 716 eyes of 716 patients with primary open angle glaucoma(POAG)with at least 5 reliable 24-2 test results and 2y of follow-up were selected.The functional GEE model was used to detect perimetric progression in the training dataset(501 eyes).In the testing dataset(215 eyes),progression was evaluated the functional GEE model,mean deviation(MD)and visual field index(VFI)rates of change,Advanced Glaucoma Intervention Study(AGIS)and Collaborative Initial Glaucoma Treatment Study(CIGTS)scores,and pointwise linear regression(PLR).RESULTS:The proposed method showed the highest proportion of eyes detected as progression(54.4%),followed by the VFI rate(34.4%),PLR(23.3%),and MD rate(21.4%).The CIGTS and AGIS scores had a lower proportion of eyes detected as progression(7.9%and 5.1%,respectively).The time to detection of progression was significantly shorter for the proposed method than that of other algorithms(adjusted P≤0.019).The VFI rate displayed moderate pairwise agreement with the proposed method(k=0.47).CONCLUSION:The functional GEE model shows the highest proportion of eyes detected as perimetric progression and the shortest time to detect perimetric progression in patients with POAG. 展开更多
关键词 functional generalized estimating equation model primary open angle glaucoma perimetric progression
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Functional central nervous system regeneration:Challenges from axons to circuits
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作者 Apolline Delaunay Mickael Le Boulc’h +1 位作者 Stephane Belin Homaira Nawabi 《Neural Regeneration Research》 2026年第5期1983-1984,共2页
The mature central nervous system(CNS,composed of the brain,spinal cord,olfactory and optic nerves)is unable to regenerate spontaneously after an insult,both in the cases of neurodegenerative diseases(for example Alzh... The mature central nervous system(CNS,composed of the brain,spinal cord,olfactory and optic nerves)is unable to regenerate spontaneously after an insult,both in the cases of neurodegenerative diseases(for example Alzheimer's or Parkinson's disease)or traumatic injuries(such as spinal cord lesions).In the last 20 years,the field has made significant progress in unlocking axon regrowth. 展开更多
关键词 parkinsons disease unlocking axon regrowth neurodegenerative diseases central nervous system cnscomposed functional regeneration axon regrowth spinal cord lesions central nervous system
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Genome-wide analysis of the MYB gene family and functional analysis of Bh MYB79 in wax gourd 被引量:1
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作者 Yulei Qian Jinqiang Yan +6 位作者 Chen Luo Yan Li Yongguan Wu Wenrui Liu Wei Liu Dasen Xie Biao Jiang 《Horticultural Plant Journal》 2025年第2期788-803,共16页
Wax gourd(Benincasa hispida)is an important cucurbit crop with economic and medicinal value.The myeloblastosis(MYB)gene family is one of the largest gene families in plants and regulates various biological processes,w... Wax gourd(Benincasa hispida)is an important cucurbit crop with economic and medicinal value.The myeloblastosis(MYB)gene family is one of the largest gene families in plants and regulates various biological processes,whereas the MYB gene family has not been systematically studied in wax gourd.In this study,we performed genome-wide identification of the MYB gene family in wax gourd and analyzed their phylogenetic relationship,MYB DNA-binding domain(MYB DBD),gene structure,protein motif,synteny,duplication mode and expression pattern.As a result,a total of 215 BhMYB genes(BhMYBs)were identified,belonging to four subfamilies:1R-,2R-,3R-and 4R-MYB subfamilies.Genes of 1R-MYB subfamily and 2R-MYB subfamily were subdivided into different subgroups respectively.The analysis of MYB DBD,gene structure and protein motif showed that the most genes in the same subgroup had similar characteristics and the 2R-MYB genes were more conserved than the 1R-MYB genes.Interestingly,the long terminal retrotransposons(LTR-RTs)were found in the long introns of several BhMYBs.The results of synteny analysis showed that there were more syntenic gene pairs between wax gourd and other cucurbit crops,while the least number of syntenic gene pairs existed between wax gourd and rice.Gene duplication was the main reason for the expansion of the MYB gene family in wax gourd,with the transposed duplication(TRD)mode contributing more.All duplication BhMYB genes were under purifying selection pressure.Further expression analysis showed that many BhMYBs exhibited obvious tissue-specific expression and several BhMYBs were significantly induced by one or more abiotic stresses.BhMYB79 was particularly expressed in roots and significantly induced by salt,drought,cold and heat stresses,overexpression of which led to reduced tolerance to salt stress in Arabidopsis.In conclusion,our results provide a systematic analysis of wax gourd MYB gene family and facilitate the biological role study of BhMYB79 during wax gourd salt stress response process. 展开更多
关键词 Wax gourd MYB gene family Abiotic stress Bioinformatic analysis BhMYB79
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Genome-wide identification of ARID-HMG related genes in citrus and functional analysis of FhARID1 in apomixis and axillary bud development 被引量:1
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作者 Xietian Song Yin Zhou +6 位作者 Zhen Cao Nan Wang Xiaoyu Tian Lijun Chai Zongzhou Xie Junli Ye Xiuxin Deng 《Horticultural Plant Journal》 2025年第3期999-1011,共13页
Polyembryony has posed a significant impediment to the advancement of citrus hybrid breeding.FhRWP is widely regarded as a pivotal factor governing asexual reproduction in citrus,and prior research has demonstrated th... Polyembryony has posed a significant impediment to the advancement of citrus hybrid breeding.FhRWP is widely regarded as a pivotal factor governing asexual reproduction in citrus,and prior research has demonstrated that FhARID1,acting as an upstream regulator,modulates FhRWP expression.In this study,we performed a genome-wide characterization of the ARID-HMG-related genes using the short juvenile minicitrus Fortunella hindsii.A total of 20 ARID-HMG-related genes were identified.Protein interaction network and enrichment analysis suggested that ARID-HMG-related proteins might might be involved in chromatin remodeling complexes.Knockout of FhARID1 in F.hindsii did not induce the conversion from polyembryony to monoembryony.However,fharid1 plants in T1 generation exhibited abnormal proliferation at axillary buds,which is similar to phenotype of fhrwp plants.Expression analysis of fharid1 ovary tissues revealed the downregulation of FhRWP.The results indicated that FhARID1,as an upstream regulator of FhRWP,has an effect on the development of citrus axillary buds.Expression analysis of overexpressed leaves of FhARID1 lines showed that no significant up-regulation of FhRWP,indicating that FhARID1 is not the sole upstream regulatory factor of FhRWP.Only FhARID2 showed a correlation in expression with FhARID1 among the ARID-related genes,further supporting the notion that this gene may be involved in complex formation rather than acting alone.Yeast two-hybrid and MS/MS spectra further indicated that FhARID1 function requires casein kinase II-mediated post-transcriptional phosphorylation.This study elucidated the function of FhARID1 in citrus apomixis and axillary bud development,providing a fundamental basis for understanding the role of ARID-HMG-related genes. 展开更多
关键词 CITRUS Fortunella hindsii FhARID1 ARID-HMG-related gene Casein Kinase II Chromatin remodeling
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3D Printing of Tough Hydrogel Scaffolds with Functional Surface Structures for Tissue Regeneration
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作者 Ke Yao Gaoying Hong +11 位作者 Ximin Yuan Weicheng Kong Pengcheng Xia Yuanrong Li Yuewei Chen Nian Liu Jing He Jue Shi Zihe Hu Yanyan Zhou Zhijian Xie Yong He 《Nano-Micro Letters》 SCIE EI CAS 2025年第2期18-45,共28页
Hydrogel scaffolds have numerous potential applications in the tissue engineering field.However,tough hydrogel scaffolds implanted in vivo are seldom reported because it is difficult to balance biocompatibility and hi... Hydrogel scaffolds have numerous potential applications in the tissue engineering field.However,tough hydrogel scaffolds implanted in vivo are seldom reported because it is difficult to balance biocompatibility and high mechanical properties.Inspired by Chinese ramen,we propose a universal fabricating method(printing-P,training-T,cross-linking-C,PTC&PCT)for tough hydrogel scaffolds to fill this gap.First,3D printing fabricates a hydrogel scaffold with desired structures(P).Then,the scaffold could have extraordinarily high mechanical properties and functional surface structure by cycle mechanical training with salting-out assistance(T).Finally,the training results are fixed by photo-cross-linking processing(C).The tough gelatin hydrogel scaffolds exhibit excellent tensile strength of 6.66 MPa(622-fold untreated)and have excellent biocompatibility.Furthermore,this scaffold possesses functional surface structures from nanometer to micron to millimeter,which can efficiently induce directional cell growth.Interestingly,this strategy can produce bionic human tissue with mechanical properties of 10 kPa-10 MPa by changing the type of salt,and many hydrogels,such as gelatin and silk,could be improved with PTC or PCT strategies.Animal experiments show that this scaffold can effectively promote the new generation of muscle fibers,blood vessels,and nerves within 4 weeks,prompting the rapid regeneration of large-volume muscle loss injuries. 展开更多
关键词 3D printing Tough hydrogel scaffold functional surface structure Tissue regeneration BIOMATERIALS
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Clinical,genetic and functional perspectives on ATP-binding cassette subfamily B member 4 variants in five cholestasis adults
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作者 Yu-Hang Weng Yu-Feng Zheng +5 位作者 Dan-Dan Yin Qing-Fang Xiong Jin-Long Li Shun-Xin Li Wei Chen Yong-Feng Yang 《World Journal of Gastroenterology》 2025年第14期142-156,共15页
BACKGROUND ATP-binding cassette subfamily B member 4(ABCB4)deficiency is associated with cholestatic liver disease primarily because of missense mutations,and many variants remain unidentified.Here,we validate the pat... BACKGROUND ATP-binding cassette subfamily B member 4(ABCB4)deficiency is associated with cholestatic liver disease primarily because of missense mutations,and many variants remain unidentified.Here,we validate the pathogenicity and mechanism of ABCB4 variants in clinical and in vitro trials,hypothesizing that these variants are responsible for impaired biliary function and contribute to the development of cholestatic liver diseases.AIM To clarify the functional features and pathogenicity of ABCB4 variants.METHODS Clinical data were collected from five patients with cholestatic liver disease that was initially not detected by routine examinations.Later,whole-exome sequencing confirmed ABCB4 variants and the patients were treated from January 2017 to December 2023.Pathogenic mechanisms were analyzed using bioinformatics tools,and a cell model in vitro was established to investigate ABCB4 mRNA expression,multidrug resistance protein 3(MDR3)expression,cellular localization,and phosphatidylcholine secretion.Results were compared using Student's t-tests.RESULTS Five missense variants(c.1757T>A,c.1865G>A,c.2362C>T,c.2777C>T and c.3250C>T),one intron variant(c.537-32G>T),and one synonymous(c.C504T)variant were identified.Three of the five patients had various degrees of cholestasis,two presented with liver cirrhosis,and all had elevated gamma-glutamyl transferase.Three of the four patients who underwent a liver biopsy had bile duct dilation,and one had gallstones.Two of the four patients had normal and reduced MDR3 immunohistochemical levels.Bioinformatic analysis indicated that these variants were likely pathogenic except c.C504T variant.None of the missense variants influenced subcellular MDR3 Localization in vitro.However,the c.1865G>A variant significantly decreased ABCB4 mRNA values,and all missense variants down-regulated phosphatidylcholine secretion.CONCLUSION This study uncovered new ABCB4 variants and emphasized the pathogenic potential of specific variants.The findings from five patients provided insight into the pathogenic mechanisms underlying ABCB4-related diseases. 展开更多
关键词 ATP-binding cassette subfamily B member 4 Multidrug resistance protein 3 CHOLESTASIS functional analysis CLINICAL gene mutation Whole-exome sequencing
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Identification of high‑affinity nicotinic acid transporter genes from Verticillium dahliae and functional analysis based on HIGS technology
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作者 WANG Yuan KAMAU Stephen +2 位作者 SONG Shenglong ZHANG Yong ZHANG Xinyu 《Journal of Cotton Research》 2025年第2期242-255,共14页
Background Verticillium dahliae,a soil-borne fungi,can cause Verticillium wilt,and seriously diminish the yield and quality of cotton.However,the pathogenic mechanism of V.dahliae is complex and not clearly understood... Background Verticillium dahliae,a soil-borne fungi,can cause Verticillium wilt,and seriously diminish the yield and quality of cotton.However,the pathogenic mechanism of V.dahliae is complex and not clearly understood at the moment.This study aimed to identify the high-affinity nicotinic acid transporter genes in V.dahliae.The gene expression profiles in V.dahliae following sensing of root exudates from susceptible and resistant cotton varieties were analyzed.The function of VdNAT1 in the pathogenic process of V.dahliae was studied using the tobacco rattle virus(TRV)-based host-induced gene silencing(HIGS)technique.Results Eight high-affinity nicotinic acid transporter genes were identified from V.dahliae through the bioinformatics method.Each protein contains a conserved major facilitator superfamily(MFS)domain,which belongs to the MFS superfamily.Evolutionary relationship analysis revealed that all 8 genes belong to the anion:cation symporter(ACS)subfamily.All proteins have transmembrane domains,ranging from 7 to 12.The expression levels of most VdNAT genes were significantly increased after induction by root exudates from susceptible cotton varieties.Silencing VdNAT1 gene by HIGS significantly inhibited the accumulation of fungal biomass in cotton plants,and alleviated the disease symptoms of cotton.Conclusions Eight VdNAT genes were identified from V.dahliae,and most VdNAT genes was up-regulated after induced by root exudates from susceptible cotton variety.In addition,VdNAT1 is required for the pathogenicity of V.dahliae.Overall,these findings will facilitate the pathogenic molecular mechanism of V.dahliae and provide candidate genes. 展开更多
关键词 Verticillium dahliae High-affinity nicotinic acid transporter gene Cotton VdNAT1 Host-induced gene silencing Major facilitator superfamily
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Functional cartography of heterogeneous combat networks using operational chain-based label propagation algorithm
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作者 CHEN Kebin JIANG Xuping +2 位作者 ZENG Guangjun YANG Wenjing ZHENG Xue 《Journal of Systems Engineering and Electronics》 2025年第5期1202-1215,共14页
To extract and display the significant information of combat systems,this paper introduces the methodology of functional cartography into combat networks and proposes an integrated framework named“functional cartogra... To extract and display the significant information of combat systems,this paper introduces the methodology of functional cartography into combat networks and proposes an integrated framework named“functional cartography of heterogeneous combat networks based on the operational chain”(FCBOC).In this framework,a functional module detection algorithm named operational chain-based label propagation algorithm(OCLPA),which considers the cooperation and interactions among combat entities and can thus naturally tackle network heterogeneity,is proposed to identify the functional modules of the network.Then,the nodes and their modules are classified into different roles according to their properties.A case study shows that FCBOC can provide a simplified description of disorderly information of combat networks and enable us to identify their functional and structural network characteristics.The results provide useful information to help commanders make precise and accurate decisions regarding the protection,disintegration or optimization of combat networks.Three algorithms are also compared with OCLPA to show that FCBOC can most effectively find functional modules with practical meaning. 展开更多
关键词 functional cartography heterogeneous combat network functional module label propagation algorithm operational chain
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Schizophrenia:Genetics,neurological mechanisms,and therapeutic approaches 被引量:1
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作者 Debbie Xiu En Lim Shi Yun Yeo +3 位作者 Zhen You Ashley Chia Aaron Zefrin Fernandis Jimmy Lee John Jia En Chua 《Neural Regeneration Research》 2026年第3期1089-1103,共15页
Schizophrenia is a complex psychiatric disorder marked by positive and negative symptoms,leading to mood disturbances,cognitive impairments,and social withdrawal.While anti-psychotic medications remain the cornerstone... Schizophrenia is a complex psychiatric disorder marked by positive and negative symptoms,leading to mood disturbances,cognitive impairments,and social withdrawal.While anti-psychotic medications remain the cornerstone of treatment,they often fail to fully address certain symptoms.Additionally,treatment-resistant schizophrenia,affecting 30%-40%of patients,remains a substantial clinical challenge.Positive,negative symptoms and cognitive impairments have been linked to disruptions in the glutamatergic,serotonin,GABAergic,and muscarinic pathways in the brain.Recent advances using genome-wide association study and other approaches have uncovered a significant number of new schizophrenia risk genes that uncovered new,and reinforced prior,concepts on the genetic and neurological underpinnings of schizophrenia,including abnormalities in synaptic function,immune processes,and lipid metabolism.Concurrently,new therapeutics targeting different modalities,which are expected to address some of the limitations of anti-psychotic drugs currently being offered to patients,are currently being evaluated.Collectively,these efforts provide new momentum for the next phase of schizophrenia research and treatment. 展开更多
关键词 NEUROINFLAMMATION neuropsychiatric disorders neurotransmitter pathways schizophrenia risk genes treatment resistance
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Corrigendum to"Topographic complexity drives trait composition as well as functional and phylogenetic diversity of understory plant communities in microrefugia:New insights for conservation"[Forest Ecosyst.12(2025)100278]
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作者 Kata Frei Anna E-Vojtkó +6 位作者 Csaba Tölgyesi András Vojtkó Tünde Farkas LászlóErdős Gábor Li Ádám Lőrincz Zoltán Bátori 《Forest Ecosystems》 2025年第3期536-538,共3页
The authors regret that an error occurred during the preparation of their article:One of the official databases,which was used for functional trait collections,contained an incorrect term–'chametophytes'–for... The authors regret that an error occurred during the preparation of their article:One of the official databases,which was used for functional trait collections,contained an incorrect term–'chametophytes'–for the life form category'chamaephytes'.Unfortunately,this incorrect term was used throughout the article following the nomenclature of this official database:in one instance in the main text,in Fig.3 and its caption,in Fig.5,and in two instances in the supplementary material. 展开更多
关键词 functional diversity functional trait collectionscontained understory plant communities supplementary material phylogenetic diversity CORRIGENDUM topographic complexity official database
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Functional insights into the FW2.2-like gene family in Chinese jujube:Identification,characterization,and impact of ZjFWL10 variants on fruit size and plant height
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作者 Meiyu Li Liyun Mao +5 位作者 Shuang Song Decang Kong Ming Cao Lijun Jiao Wenhao Bo Xiaoming Pang 《Journal of Integrative Agriculture》 2025年第10期3880-3894,共15页
The FW2.2-like(FWL)gene family has been extensively studied across multiple species,demonstrating conserved functions among specific members in organ development,particularly in fruit size regulation.For species with ... The FW2.2-like(FWL)gene family has been extensively studied across multiple species,demonstrating conserved functions among specific members in organ development,particularly in fruit size regulation.For species with limited research foundations,such as Chinese jujube,analyzing this gene family is an effective approach to identify candidate genes for fruit size.This study identified twenty ZjFWL genes and comprehensively analyzed their chromosomal distribution,phylogenetic relationships,gene structure,evolutionary dynamics,expression patterns,and cis-acting elements in their promoters.Natural variation analysis of the ZjFWL10 sequence identified a significant correlation between a seven-base pair deletion in the conserved domain and jujube fruit size.To validate the functional implications of the seven-base pair deletion genotype,heterologous overexpression experiments were conducted in tomatoes,generating three overexpression lines.Comparative analysis with the wild-type demonstrated a significant reduction in fruit size and a notable increase in plant height in the overexpressed lines.This gene may play a critical role in regulating nutrient partitioning in jujube,ultimately affecting fruit size.These findings advance our understanding of fruit size regulation mechanisms and offer valuable insights for genetic improvement strategies targeting jujube fruit size. 展开更多
关键词 FWL gene family fruit size Chinese jujube
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Novel genetic loci and a functional gene Gm18GRSC3 conferring SMV-SC3 resistance in soybean
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作者 Jiahao Chu Wenlong Li +7 位作者 Zhenqi Shao Zhanwu Yang Xinzhu Xing Hua Zhang Rui Tian Huantao Zhang Xihuan Li Caiying Zhang 《The Crop Journal》 2025年第4期1127-1136,共10页
Soybean mosaic virus(SMV)is a worldwide disease significantly decreasing soybean yield and seed quality.In this study,a genome-wide association study(GWAS)for SMV-SC3 resistance was conducted by using a deep re-sequen... Soybean mosaic virus(SMV)is a worldwide disease significantly decreasing soybean yield and seed quality.In this study,a genome-wide association study(GWAS)for SMV-SC3 resistance was conducted by using a deep re-sequencing dataset of 547 soybean accessions.A total of 11,405 SNPs and 1566 InDels were significantly associated with disease index(DI)at seedling stage and eight yield-and seed quality-related traits to SC3 resistance under eight environments.Among these genetic loci,952 SNPs and 118 InDels were firstly identified to control SC3 resistance,and 52.42% and 42.37% of them were pleiotropic loci across multiple environments.Notably,the 8.47-8.89 Mb genomic region on chromosome 18 was firstly discovvered to associate with DI at seedling stage and four related traits at adult stage across multiple environments.Furthermore,the causal gene Gm18GRSC3 was identified and validated in this stable and pleiotropic locus for resistance to SC3 via positive and negative transgenic strategies.Overexpression of Gm18GRSC3 significantly decreased the accumulation of SC3 in transgenic soybean hairy roots,while silencing of Gm18GRSC3 significantly increased SC3 accumulation in soybean leaves.A functional marker,FM18GSC3,was developed based on the allelic variation of Gm18GRSC3,and the detection efficiency reached to 76% in another 100 soybean accessions.These findings provide valuable genetic loci and a functional gene for the improvement of SMV resistance in soybean. 展开更多
关键词 SOYBEAN SMV-SC3 GWAS genetic loci functional marker
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Fragmentation effects onβ-diversity:The role of abundance and intraspecifictrait variation in shaping taxonomic,functional,and phylogenetic patterns
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作者 Aiying Zhang Xiaofei Wei +3 位作者 Donghao Wu Zhonghan Wang Mingjian Yu Lingfeng Mao 《Plant Diversity》 2025年第6期981-990,共10页
Habitat fragmentation dramatically reshapes species richness and community composition.However,most estimates ofβ-diversity rely on incidence-based metrics,which consider only species presence/absence.Here,we introdu... Habitat fragmentation dramatically reshapes species richness and community composition.However,most estimates ofβ-diversity rely on incidence-based metrics,which consider only species presence/absence.Here,we introduce a novel framework that explicitly incorporates species abundance and intraspecifictrait variation(ITV)into the quantificationof taxonomic,functional,and phylogeneticβ-diversity,allowing a more nuanced understanding of community differentiation.To demonstrate the utility of this framework,we quantifiedthe effects of island area and isolation onβ-diversity across plant communities in China's Thousand Island Lake.Abundance-weighted taxonomic multiple-site/pairwiseβ-diversity showed substantially higher nestedness and stronger nestedness-area relationship than incidence-based metrics,indicating that species-poor communities are not only subsets of richer ones but share similar abundance hierarchies,highlighting strong environmental filteringand hierarchical species sorting.We also found that the turnover component was less sensitive to isolation,suggesting limited dispersal effects.Incidence-based functional and phylogenetic distances increased with differences in island area,but these associations weakened or disappeared in abundance-weighted measures,suggesting stronger environmental filteringand functional/phylogenetic clustering among larger islands.Only abundance-weighted standardized effect sizes increased with island area differences.Additionally,ITV further amplifiedfunctional nestedness and buffered the influenceof isolation on turnover,emphasizing its role in mitigating dispersal limitations.By jointly considering abundance and ITV,two often-overlooked but critical dimensions,this study advances our understanding of how fragmentation shapesβ-diversity.These findingshighlight the importance of integrating abundanceweighted and trait-based metrics into conservation strategies to better detect functionally important species,prioritize larger habitat patches,and design biodiversity monitoring that captures withinspecies variation. 展开更多
关键词 functional traits Island biogeography Isolation ITV NESTEDNESS TURNOVER
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Genomic and functional analysis of isochorismate synthase genes in sugarcane and their roles in disease resistance
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作者 Zhen Zeng Xinyu Zhu +4 位作者 Jiaoyun Chen Shilong Zhang Sisi Zhou Kailin Li Wankuan Shen 《The Crop Journal》 2025年第4期1210-1223,共14页
Isochorismate synthase(ICS),a key rate-limiting enzyme in the salicylic acid(SA)biosynthesis pathway in plants,is essential for plant growth and defense against diseases.However,there has been no report on ICS in suga... Isochorismate synthase(ICS),a key rate-limiting enzyme in the salicylic acid(SA)biosynthesis pathway in plants,is essential for plant growth and defense against diseases.However,there has been no report on ICS in sugarcane(Saccharum spp.).In this study,18 SsICSs,42 ShICSs,and 36 SzICSs were identified from the genomes of sugarcane AP85-441(Saccharum spontaneum),XTT22(Saccharum spp.hybrid cultivar),and ZZ1(Saccharum spp.hybrid cultivar),respectively.These were phylogenetically divided into three groups,forming distinct clades that were evolutionarily divergent from those in dicotyledonous species.The evolutionary profile of the ICS gene family suggested expansion through whole-genome duplication/segmental events and strong purifying selection.Promoter cis-element and transcriptome analyses indicated that the ICS gene family responded to disease stress.We cloned the ScICS(isochorismate synthase)gene from sugarcane cultivar XTT22 leaves,and found it was localized in chloroplasts.In vivo and in vitro interaction studies revealed an interaction between ScICS and an ScMYB transcription factor.We showed that ScWRKY28 positively regulated ScICS expression by binding to its promoter.ScICS overexpression in transgenic tobacco confirmed its effectiveness in enhancing disease resistance.There was a significant increase in SA content following pathogen infection along with activation of downstream signaling pathways and defense mechanisms.This study establishes the groundwork for functional studies of sugarcane ICS genes and enhances our understanding of the mechanisms of disease resistance in sugarcane. 展开更多
关键词 Isochorismate synthase SUGARCANE Disease resistance gene family Transcription factors Salicylic acid
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Activation of adult endogenous neurogenesis by a hyaluronic acid collagen gel containing basic fibroblast growth factor promotes remodeling and functional recovery of the injured cerebral cortex
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作者 Yan Li Peng Hao +6 位作者 Hongmei Duan Fei Hao Wen Zhao Yudan Gao Zhaoyang Yang Kwok-Fai So Xiaoguang Li 《Neural Regeneration Research》 SCIE CAS 2025年第10期2923-2937,共15页
The presence of endogenous neural stem/progenitor cells in the adult mammalian brain suggests that the central nervous system can be repaired and regenerated after injury.However,whether it is possible to stimulate ne... The presence of endogenous neural stem/progenitor cells in the adult mammalian brain suggests that the central nervous system can be repaired and regenerated after injury.However,whether it is possible to stimulate neurogenesis and reconstruct cortical layers II to VI in non-neurogenic regions,such as the cortex,remains unknown.In this study,we implanted a hyaluronic acid collagen gel loaded with basic fibroblast growth factor into the motor cortex immediately following traumatic injury.Our findings reveal that this gel effectively stimulated the proliferation and migration of endogenous neural stem/progenitor cells,as well as their differentiation into mature and functionally integrated neurons.Importantly,these new neurons reconstructed the architecture of cortical layers II to VI,integrated into the existing neural circuitry,and ultimately led to improved brain function.These findings offer novel insight into potential clinical treatments for traumatic cerebral cortex injuries. 展开更多
关键词 adult endogenous neurogenesis basic fibroblast growth factor-hyaluronic acid collagen gel cortical remodeling functional recovery migration motor cortex injury neural circuits neural stem cells newborn neurons proliferation
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Avian phylogenetic and functional diversity and their influencing factors in urban parks of Nanjing,China
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作者 Qihuan He Xu Jiang +5 位作者 Yinuo Feng Jie Shao Xingchang Yang Xueru Yang Xinwei Tan Yanping Wang 《Avian Research》 2025年第4期600-609,共10页
The acceleration of global urbanization has caused habitat loss,fragmentation,and decrease of habitat quality,often leading to a decline in biodiversity.However,most previous urbanization studies focused on taxonomic ... The acceleration of global urbanization has caused habitat loss,fragmentation,and decrease of habitat quality,often leading to a decline in biodiversity.However,most previous urbanization studies focused on taxonomic diversity,with relatively less research on functional and phylogenetic diversity.In this study,we examined the phylogenetic and functional diversity and underlying influencing factors of bird communities in 37 urban parks in Nanjing,China.We conducted a systematic survey of bird communities in Nanjing urban parks and selected six park characteristics that are generally considered to affect bird diversity.Model selection based on corrected Akaike Information Criterion(AICc)and model averaging showed that park area,habitat diversity and building index(a proxy for the degree of urbanization)were significant factors affecting avian phylogenetic and functional diversity in Nanjing urban parks.Specifically,habitat diversity and park area were positively correlated with bird diversity,while the building index was negatively correlated with bird diversity.Moreover,the phylogenetic and functional structures of urban bird communities exhibited a clustered pattern,indicating that environmental filtering might play a role in shaping community composition.In addition,building index had certain impact on the construction of bird phylogenetic communities in urban parks.Our results suggest that expanding park areas,increasing habitat diversity and reducing building indexes may be effective measures to increase the avian phylogenetic and functional diversity in our system. 展开更多
关键词 BIRDS Community construction functional diversity Phylogenetic diversity URBANIZATION Urban parks
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MMH-FE:AMulti-Precision and Multi-Sourced Heterogeneous Privacy-Preserving Neural Network Training Based on Functional Encryption
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作者 Hao Li Kuan Shao +2 位作者 Xin Wang Mufeng Wang Zhenyong Zhang 《Computers, Materials & Continua》 2025年第3期5387-5405,共19页
Due to the development of cloud computing and machine learning,users can upload their data to the cloud for machine learning model training.However,dishonest clouds may infer user data,resulting in user data leakage.P... Due to the development of cloud computing and machine learning,users can upload their data to the cloud for machine learning model training.However,dishonest clouds may infer user data,resulting in user data leakage.Previous schemes have achieved secure outsourced computing,but they suffer from low computational accuracy,difficult-to-handle heterogeneous distribution of data from multiple sources,and high computational cost,which result in extremely poor user experience and expensive cloud computing costs.To address the above problems,we propose amulti-precision,multi-sourced,andmulti-key outsourcing neural network training scheme.Firstly,we design a multi-precision functional encryption computation based on Euclidean division.Second,we design the outsourcing model training algorithm based on a multi-precision functional encryption with multi-sourced heterogeneity.Finally,we conduct experiments on three datasets.The results indicate that our framework achieves an accuracy improvement of 6%to 30%.Additionally,it offers a memory space optimization of 1.0×2^(24) times compared to the previous best approach. 展开更多
关键词 functional encryption multi-sourced heterogeneous data privacy preservation neural networks
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Ordered structures with Schottky heterojunction functional unit regulate immune response and osteogenesis
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作者 Peng Yu Maofei Ran +7 位作者 Heying Ran Xuebin Yang Youzhun Fan Zhengao Wang Zhengnan Zhou Jinxia Zhai Zefeng Lin Chengyun Ning 《Journal of Materials Science & Technology》 2025年第10期276-287,共12页
Mimicking the electric microenvironment of natural tissue is a promising strategy for developing biomedical implants. However, current research has not taken biomimetic electrical functional units into consideration w... Mimicking the electric microenvironment of natural tissue is a promising strategy for developing biomedical implants. However, current research has not taken biomimetic electrical functional units into consideration when designing biomedical implants. In this research, ordered structures with Schottky heterojunction functional unit (OSSH) were constructed on titanium implant surfaces for bone regeneration regulation. The Schottky heterojunction functional unit is composed of periodically distributed titanium microdomain and titanium oxide microdomain with different carrier densities and surface potentials. The OSSH regulates the M2-type polarization of macrophages to a regenerative immune response by activating the PI3K-AKT-mTOR signal pathway and further promotes osteogenic differentiation of rat bone marrow mesenchymal stem cells. This work provides fundamental insights into the biological effects driven by the Schottky heterojunction functional units that can electrically modulate osteogenesis. 展开更多
关键词 Ordered structures with functional unit MACROPHAGE Implant OSTEOgeneSIS Electric microenvironment
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From Wave Energy to Electricity:Functional Design and Performance Analysis of Triboelectric Nanogenerators
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作者 Ying Lou Mengfan Li +2 位作者 Aifang Yu Junyi Zhai Zhong Lin Wang 《Nano-Micro Letters》 2025年第12期33-73,共41页
Triboelectric nanogenerators(TENGs)offer a selfsustaining power solution for marine regions abundant in resources but constrained by energy availability.Since their pioneering use in wave energy harvesting in 2014,nea... Triboelectric nanogenerators(TENGs)offer a selfsustaining power solution for marine regions abundant in resources but constrained by energy availability.Since their pioneering use in wave energy harvesting in 2014,nearly a decade of advancements has yielded nearly thousands of research articles in this domain.Researchers have developed various TENG device structures with diverse functionalities to facilitate their commercial deployment.Nonetheless,there is a gap in comprehensive summaries and performance evaluations of TENG structural designs.This paper delineates six innovative structural designs,focusing on enhancing internal device output and adapting to external environments:high space utilization,hybrid generator,mechanical gain,broadband response,multi-directional operation,and hybrid energy-harvesting systems.We summarize the prevailing trends in device structure design identified by the research community.Furthermore,we conduct a meticulous comparison of the electrical performance of these devices under motorized,simulated wave,and real marine conditions,while also assessing their sustainability in terms of device durability and mechanical robustness.In conclusion,the paper outlines future research avenues and discusses the obstacles encountered in the TENG field.This review aims to offer valuable perspectives for ongoing research and to advance the progress and application of TENG technology. 展开更多
关键词 Triboelectric nanogenerator functional design Blue energy Electrical performance Sustainability analysis
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Topographic complexity drives trait composition as well as functional and phylogenetic diversity of understory plant communities in microrefugia:New insights for conservation
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作者 Kata Frei Anna E-Vojtkó +6 位作者 Csaba Tölgyesi Andráas Vojtkó Tünde Farkas Lászlo Erdös Gáabor Li Ádáam Lörincz Zoltáan Báatori 《Forest Ecosystems》 2025年第2期209-219,共11页
Topographic complexity supports the maintenance of a high diversity of microhabitats,which may act as important‘safe havens’-or microrefugia-for biodiversity.Microrefugia are sites with specific environmental condit... Topographic complexity supports the maintenance of a high diversity of microhabitats,which may act as important‘safe havens’-or microrefugia-for biodiversity.Microrefugia are sites with specific environmental conditions that facilitate the persistence of species during environmental changes and exhibit unique ecoevolutionary dynamics.However,our knowledge about how topographic complexity and related ecoevolutionary selective forces influence the functional and phylogenetic signatures of species assemblages in microrefugia is very limited.Although the conceptual framework on the systematic integration of plant functional traits into the study of refugia is well established,more empirical studies on functional trait composition and functional diversity in refugia are urgently needed for more effective conservation.Here we analyzed the distribution of various plant functional traits and phylogenetic patterns in microhabitats(south-and north-facing slopes,and bottoms)of 30 large topographic depressions(i.e.doline microrefugia)and microhabitats of the surrounding plateaus in two distant forested karst regions.We found that plant assemblages in the understory of dolines and their surroundings are characterized by unique functional values and combinations of traits.Doline bottoms had the highest functional diversity among doline microhabitats and supported plant assemblages with considerably different trait compositions from the plateaus.Bottoms also had the highest phylogenetic diversity.These results suggest that topographic complexity in forested dolines has a significant effect on the distribution of plant functional traits in the understory.High functional and phylogenetic diversity in doline bottoms can have important consequences for the long-term survival of plant populations,highlighting that these microhabitats may provide a higher resilience and support an adaptive community-level response to natural and anthropogenic stressors.Understanding mechanisms that drive the survival of species within microrefugia is required to determine the best conservation and management strategies. 展开更多
关键词 DOLINE Forest herbs functional diversity MICROCLIMATE MICROHABITAT Phylogenetic diversity Species trait Vegetation
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