Dear Editor,This letter presents a novel latent factorization model for high dimensional and incomplete (HDI) tensor, namely the neural Tucker factorization (Neu Tuc F), which is a generic neural network-based latent-...Dear Editor,This letter presents a novel latent factorization model for high dimensional and incomplete (HDI) tensor, namely the neural Tucker factorization (Neu Tuc F), which is a generic neural network-based latent-factorization-of-tensors model under the Tucker decomposition framework.展开更多
[ Objective ] The study aimed to explore the release conditions for the conidia of Botryosphaena berengeriana and understand the release dynamic of conidia. [Method] The systematical survey on the release conditions f...[ Objective ] The study aimed to explore the release conditions for the conidia of Botryosphaena berengeriana and understand the release dynamic of conidia. [Method] The systematical survey on the release conditions for the conidia of B. berengeriana were conducted in two growing seasons in 2008 and 2009, combined with the collection of meteorological data around conidia release period, the weather conditions causing large amount release of B. berengedana were analyzed. [ Result] During a growing season, the conidia of pathogen appeared several large release peaks. Under the suitable temperature, when the precipitation lasted for 4 h, the conidia of B. berengeriana began to release with large amount, the amount of conidia reached the peak after release and trended to be stable during 4 - 12 h, which significantly reduced after 24 h, tended to dis- appear after 36 h, and completely disappeared after 72 h. [Conclusion] The dominant factor affecting B. berengeriana conidia release in large a- mount was precipitation, while the lasting time of precipitation played a decisive role.展开更多
[Objective] This study aimed to analyze the influence of six cultivation fac- tors： sowing date, plant density, nitrogen fertilizer amount, phosphate fertilizer amount, potash fertilizer amount and boron fertilizer a...[Objective] This study aimed to analyze the influence of six cultivation fac- tors： sowing date, plant density, nitrogen fertilizer amount, phosphate fertilizer amount, potash fertilizer amount and boron fertilizer amount on seed oil yield of Brassica napus. [Method] Statistical analysis was carried out based on the data from previous studies and our work. [Result] Oil yield shared a negative correlation with sowing date, a parabolic relationship with plant density mostly, parabolic rela- tionships with amount of applied nitrogen fertilizer and amount of applied boron fer- tilizer, straight-line relationships with amount of applied phosphate fertilizer and amount of applied potash fertilizer. The average amount of applied nitrogen fertilizer required to obtain the highest oil yield was 185.18 kg/hm2 for high-oil rape varieties （with oil content above 44.00%）, and under this condition, the average oil yield of low-oil rape varieties （with oil content below 42.00%） was 1 247.84 kg/hm2, while that of high-oil rape varieties was 1 442.60 kg/hm2, which was 15.61% more than the former. The average amount of applied nitrogen fertilizer required to obtain the highest oil yield for lower-oil rape varieties was 286.28 kg/hm2, and under this con- dition, the average oil yield of the low-oil rape varieties was 1 350.57 kg/hm2, while that of the high-oil varieties was 6.81% higher than it. There was a significant neg- ative correlation between rapeseed oil yield and the amount of applied nitrogen fer- tilizer to obtain the highest oil yield （0.980 0）. The optimum amount of applied ni- trogen, phosphate, potash and boron fertilizer were 187.5-195, 187.5-195, 105-120, 135-150 and 15-22.5 kg/hm2 for high-oil B. napus varieties. [Conclusion] This study determined the influence of sowing date, plant density and amount of applied nitro- gen fertilizer on oil yield of B. napus, and proposed an optimum cultivation pattern for high-oil varieties.展开更多
Fig fruit firmness decreases rapidly during ripening and after harvest,resulting in poor storability and transportation loss,which severely restricts development of the fresh fig industry.APETALA2/ethylene-responsive ...Fig fruit firmness decreases rapidly during ripening and after harvest,resulting in poor storability and transportation loss,which severely restricts development of the fresh fig industry.APETALA2/ethylene-responsive factor(AP2/ERF)transcription factors are downstream components of the ethylene-signaling pathway that play crucial roles in quality formation during fruit ripening.In this study,Ficus carica(Fc)ERF12 was clustered in repressor subfamily VIII of ERFs through phylogenetic analysis,and further recruited by its two EAR motifs and expression pattern during fig ripening.DNA affinity purification sequencing analysis indicated that FcERF12 binds to the promoter or gene body regions of multiple ripening-related genes,including cell wall-modification genes FcPG,FcXTH and FcPME,and ethylene-biosynthesis genes FcACS and FcACO.Yeast two-hybrid assay demonstrated that FcERF12 interacts with TOPLESS(TPL)co-repressors FcTPL1,FcTPL4 and FcTPL5,and histone deacetylases FcHDA6 and FcHDA19;interaction with FcTPL4 and FcTPL5 relied on the C-terminal EAR motif.Overexpressing FcERF12 in tomato did not change fruit size or yield,but resulted in an 18.37%increment in fruit firmness and a 49.62%reduction in ethylene-release rate at fruit ripening,accompanied by a significant decrease in seed number per fruit.Transcriptomic analysis revealed downregulation of tomato cell wallmodification genes SlPL,SlEXP and SlPG,and ethylene-synthesis genes SlACO and SlACS.Metabolomic profiling identified 82 differentially accumulated flavonoid metabolites,61 of them showing significantly decreased contents.Taken together,our results exhibit the negative regulatory role of FcERF12 in fig ethylene-signal transduction,providing new information on precise control of fruit firmness and other quality traits at ripening.展开更多
Based on sequencing of part clones in a root subtractive cDNA library, an expressed sequence tag （EST） sharing high similarity to a rice C2H2 zinc finger transcription factor （ZFP15） was obtained in wheat. Through...Based on sequencing of part clones in a root subtractive cDNA library, an expressed sequence tag （EST） sharing high similarity to a rice C2H2 zinc finger transcription factor （ZFP15） was obtained in wheat. Through bioinformatics approach, the wheat C2H2-type ZFP gene referred to TaZFP15 has been identified and characterized. As a full-length cDNA of 670 bp, TaZFP15 has an open reading frame of 408 bp and encodes a 135-aa polypeptide. TaZFP15 contains two C2H2 zinc finger domains and each one has a conserved motif QALGGH. The typical L-box, generally identified in the C2H2 type transcription factors, has also been found in TaZFP15. Phylogenetic analysis suggested that TaZFP15 shares high similarities with rice ZFP15 （GenBank accession no. AY286473）, maize ZFP （GenBank accession no. NM_001159094） and a subset of other zinc-finger transcription factor genes in plant species. The expression of TaZFP15 was up-regulated by starved-Pi stress, showing a pattern to be gradually elevated along with the progression of the Pi-stress in a 23-h treatment regime. Similarly, the transcripts of TaZFP15 in roots were also induced by nitrogen deficiency, and abiotic stresses of drought and salinity. No responses of TaZFP15 were detected in roots to nutrition deficiencies of P, Zn, and Ca, and the external treatment of abscisic acid （ABA）. TaZFP15 could be specifically amplified in genome A, B, and D, and without variability in the sequences, suggesting that TaZFP15 has multi-copies in the homologous hexaploid species. Transgenic analysis in tobacco revealed that up-regulation of TaZFP15 could significantly improve plant dry mass accumulation via increasing the plant phosphorus acquisition capacity under Pi-deficiency condition. The results suggested that TaZFP15 is involved in mediation of signal transductions of diverse external stresses.展开更多
Foxtail millet（Setaria italica（L.）P.Beauv）is a naturally stress tolerant crop.Compared to other gramineous crops,it has relatively stronger drought and lower nutrition stress tolerance traits.To date,the scope of ...Foxtail millet（Setaria italica（L.）P.Beauv）is a naturally stress tolerant crop.Compared to other gramineous crops,it has relatively stronger drought and lower nutrition stress tolerance traits.To date,the scope of functional genomics research in foxtail millet（S.italic L.）has been quite limited.NAC（NAM,ATAF1/2 and CUC2）-like transcription factors are known to be involved in various biological processes,including abiotic stress responses.In our previous foxtail millet（S.italic L.）RNA seq analysis,we found that the expression of a NAC-like transcription factor,SiNAC110,could be induced by drought stress;additionally,other references have reported that SiNAC110 expression could be induced by abiotic stress.So,we here selected SiNAC110 for further characterization and functional analysis.First,the predicted SiNAC110 protein encoded indicated SiNAC110 has a conserved NAM（no apical meristem）domain between the 11–139 amino acid positions.Phylogenetic analysis then indicated that SiNAC110 belongs to subfamily III of the NAC gene family.Subcellular localization analysis revealed that the SiNAC110-GFP fusion protein was localized to the nucleus in Arabidopsis protoplasts.Gene expression profiling analysis indicated that expression of SiNAC110 was induced by dehydration,high salinity and other abiotic stresses.Gene functional analysis using SiNAC110 overexpressed Arabidopsis plants indicated that,under drought and high salt stress conditions,the seed germination rate,root length,root surface area,fresh weight,and dry weight of the SiNAC110 overexpressed lines were significantly higher than the wild type（WT）,suggesting that the SiNAC110 overexpressed lines had enhanced tolerance to drought and high salt stresses.However,overexpression of SiN AC110 did not affect the sensitivity of SiNAC110 overexpressed lines to abscisic acid（ABA）treatment.Expression analysis of genes involved in proline synthesis,Na＋/K＋transport,drought responses,and aqueous transport proteins were higher in the SiNAC110overexpressed lines than in the WT,whereas expression of ABA-dependent pathway genes did not change.These results indicated that overexpression of SiNAC110 conferred tolerance to drought and high salt stresses,likely through influencing the regulation of proline biosynthesis,ion homeostasis and osmotic balance.Therefore,SiNAC110 appears to function in the ABA-independent abiotic stress response pathway in plants.展开更多
Let G be a bipartite graph with vertex set V(G) and edge set E(G), and let g and f be two positive integer-valued functions defined on V(G) such that g(x) ≤ f(x) for every vertex x of V(G). Then a (g, f)-factor of G ...Let G be a bipartite graph with vertex set V(G) and edge set E(G), and let g and f be two positive integer-valued functions defined on V(G) such that g(x) ≤ f(x) for every vertex x of V(G). Then a (g, f)-factor of G is a spanning subgraph H of G such that g(x) ≤ dH(x) 5 f(x) for each x ∈ V(H). A (g, f)-factorization of G is a partition of E(G) into edge-disjoint (g, f)-factors. Let F = {F1, F2,…… ， Fm } and H be a factorization and a subgraph of G, respectively. If F, 1 ≤ i ≤ m， has exactly one edge in common with H, then it is said that ■ is orthogonal to H. It is proved that every bipartite (mg + m - 1, mf - m + 1 )-graph G has a (g, f)-factorization orthogonal to k vertex disjoint m-subgraphs of G if 2-k ≤ g(x) for all x ∈ V(G). Furthermore, it is showed that the results in this paper are best possible.展开更多
Cotton growth and development are determined and influenced by cultivars, meteorological conditions, and management practices. The objective of this study was to quantify the optimum of temperature-light meteorologica...Cotton growth and development are determined and influenced by cultivars, meteorological conditions, and management practices. The objective of this study was to quantify the optimum of temperature-light meteorological factors for seedcotton biomass per boll with respect to boll positions. Field experiments were conducted using two cultivars of Kemian 1 and Sumian 15 with three planting dates of 25 April （mean daily temperature （MDT） was 28.0 and 25.4°C in 2010 and 2011, respectively）, 25 May （MDT was 22.5 and 21.2°C in 2010 and 2011, respectively）, and 10 Jun （MDT was 18.7 and 17.9°C in 2010 and 2011, respectively）, and under three shading levels （crop relative light rates （CRLR） were 100, 80, and 60％） during 2010 and 2011 cotton boll development period （from anthesis to boll open stages）. The main meteorological factors （temperature and light） affected seedcotton biomass per boll differently among different boll positions and cultivars. Mean daily radiation （MDR） affected seedcotton biomass per boll at all boll positions, except fruiting branch 2 （FB2） fruting node 1 （FN1）. However, its influence was less than temperature factors, especially growing degree-days （GDD）. Optimum mean daily maximum temperature （MDTmax） for seedcotton biomass per boll at FB11FN3 was 29.9-32.4°C, and the optimum MDR at aforementioned position was 15.8-17.5 MJ m-2. Definitely, these results can contribute to future cultural practices such as rational cultivars choice and distribution, simplifying field managements and mechanization to acquire more efficient and economical cotton management.展开更多
Among APETALA2 (AP2)-type plant specific transcription factor family, WRINKLED1 (WRI1), has appeared to be a master gene transcriptionally regulating a set of carbon metabolism- and fatty acid synthesis (FAS)-related ...Among APETALA2 (AP2)-type plant specific transcription factor family, WRINKLED1 (WRI1), has appeared to be a master gene transcriptionally regulating a set of carbon metabolism- and fatty acid synthesis (FAS)-related genes responsible for seed specific triacylglycerols (TAGs) storage in oil plants. B3 type transcription factors, such as ABI3 and FUS3, are known to be involved in seed development, such as seed storage protein synthesis and maturation. Based on the recent whole genome sequence data of castor bean (Ricinus communis L.), putative WRI1 homologs (RcWRI1, RcWRI2) specifically expressed in castor bean seed have been identified by comparing organ specific expression profiles among seed development-related transcription factors, seed storage specific genes (Ricin, RcOleosin) and a set of FAS genes including genes for sucrose synthase (RcSUS2), biotin carboxyl carrier protein (a subunit of acetyl-CoA carboxylase, RcBCCP2) and ketoacyl-acyl carrier protein synthase (RcKAS1). Immunoreactive signals with WRI1, FUS3 and ABI5-related polypeptides were also detected in seed specifically, consistent with the expression profiles of seed development-related genes. The WRI1 binding consensus sites, [CnTnG](n)(7)[CG], designated as the AW-box, were found at the promoter region of RcBCCP2 and RcKAS1. Thus, RcWRI1 possibly play a pivotal role in seed specific TAGs storage during seed development by directly activating FAS -related genes.展开更多
High-dimensional and sparse(HiDS)matrices commonly arise in various industrial applications,e.g.,recommender systems(RSs),social networks,and wireless sensor networks.Since they contain rich information,how to accurat...High-dimensional and sparse(HiDS)matrices commonly arise in various industrial applications,e.g.,recommender systems(RSs),social networks,and wireless sensor networks.Since they contain rich information,how to accurately represent them is of great significance.A latent factor(LF)model is one of the most popular and successful ways to address this issue.Current LF models mostly adopt L2-norm-oriented Loss to represent an HiDS matrix,i.e.,they sum the errors between observed data and predicted ones with L2-norm.Yet L2-norm is sensitive to outlier data.Unfortunately,outlier data usually exist in such matrices.For example,an HiDS matrix from RSs commonly contains many outlier ratings due to some heedless/malicious users.To address this issue,this work proposes a smooth L1-norm-oriented latent factor(SL-LF)model.Its main idea is to adopt smooth L1-norm rather than L2-norm to form its Loss,making it have both strong robustness and high accuracy in predicting the missing data of an HiDS matrix.Experimental results on eight HiDS matrices generated by industrial applications verify that the proposed SL-LF model not only is robust to the outlier data but also has significantly higher prediction accuracy than state-of-the-art models when they are used to predict the missing data of HiDS matrices.展开更多
The soybean cultivar Yudou25 was sown at 5 locations of Henan Province on 13 differentdates in 2001 and 2002. The data of isoflavone contents for the 109 samples of soybeanseed and 33 eco-physiological factors includi...The soybean cultivar Yudou25 was sown at 5 locations of Henan Province on 13 differentdates in 2001 and 2002. The data of isoflavone contents for the 109 samples of soybeanseed and 33 eco-physiological factors including meteorological factors, soil nutritionand altitudes were received and used for statistical analysis. The step-wise regressionwas used to screen the correlated factors, which significantly effected isoflavonecontents. Results showed that 9 eco-physiological factors were highly correlated withisoflavones. Low mean temperature, high diurnal temperature range at seed filling andmaturity, more sunlight hours and low mean temperature at emergence were favorable toisoflavone accumulation. The rainfall at emergence showed a nonlinear relationship withisoflavone content and its optimum value was 75 mm for isoflavone formation. Low diurnaltemperature range at branching, high organic matter and low sulfur content in soil weresuitable for the formation of isoflavones. The isoflavone contents would not be affectedby other eco-physiological factors in this study.展开更多
Warfarin is a commonly used anticoagulant with a narrow therapeutic range and risk of hemorrhagic complications. After CYP2C9 and VKORC1, CYP4F2 was confirmed as the third principle genetic determinant of warfarin dos...Warfarin is a commonly used anticoagulant with a narrow therapeutic range and risk of hemorrhagic complications. After CYP2C9 and VKORC1, CYP4F2 was confirmed as the third principle genetic determinant of warfarin dose variability.展开更多
基金supported by the National Natural Science Foundation of China(62272078)Chongqing Natural Science Foundation(CSTB2023NSCQ-LZX0069)the Science and Technology Research Program of Chongqing Municipal Education Commission(KJQN202300210)
文摘Dear Editor,This letter presents a novel latent factorization model for high dimensional and incomplete (HDI) tensor, namely the neural Tucker factorization (Neu Tuc F), which is a generic neural network-based latent-factorization-of-tensors model under the Tucker decomposition framework.
基金Supported by State Apple Industry Technology System Project(nybcytx-08-04-01)~~
文摘[ Objective ] The study aimed to explore the release conditions for the conidia of Botryosphaena berengeriana and understand the release dynamic of conidia. [Method] The systematical survey on the release conditions for the conidia of B. berengeriana were conducted in two growing seasons in 2008 and 2009, combined with the collection of meteorological data around conidia release period, the weather conditions causing large amount release of B. berengedana were analyzed. [ Result] During a growing season, the conidia of pathogen appeared several large release peaks. Under the suitable temperature, when the precipitation lasted for 4 h, the conidia of B. berengeriana began to release with large amount, the amount of conidia reached the peak after release and trended to be stable during 4 - 12 h, which significantly reduced after 24 h, tended to dis- appear after 36 h, and completely disappeared after 72 h. [Conclusion] The dominant factor affecting B. berengeriana conidia release in large a- mount was precipitation, while the lasting time of precipitation played a decisive role.
基金Supported by Earmarked Fund for Modern Rapeseed Research System of China(nycytx-00563)High-oil Hybrid Brassica napus Rapeseed Cultivation Technology Research Program of Guizhou Academy of Agricultural Sciences[ZX(2007)015]+3 种基金Hybrid Rapeseed Cultivar Yoyan 599 Promotion Program of Guizhou Academy of Agricultural Sciences[(2009)030]New High-yield Rapeseed Cultivar Yoyan 599 Cultivation and Promotion Program of Agriculture department of Guizhou Province[(2009)007]New High-oil Rapeseed Cultivar Sanbei 98 Cultivation and Promotion Program of Agriculture Department of Guizhou Province[(2010)3087]Earmarked Fund for Modern Rapeseed Research System of Guizhou Province(GZCYTX2013-0802)~~
文摘[Objective] This study aimed to analyze the influence of six cultivation fac- tors： sowing date, plant density, nitrogen fertilizer amount, phosphate fertilizer amount, potash fertilizer amount and boron fertilizer amount on seed oil yield of Brassica napus. [Method] Statistical analysis was carried out based on the data from previous studies and our work. [Result] Oil yield shared a negative correlation with sowing date, a parabolic relationship with plant density mostly, parabolic rela- tionships with amount of applied nitrogen fertilizer and amount of applied boron fer- tilizer, straight-line relationships with amount of applied phosphate fertilizer and amount of applied potash fertilizer. The average amount of applied nitrogen fertilizer required to obtain the highest oil yield was 185.18 kg/hm2 for high-oil rape varieties （with oil content above 44.00%）, and under this condition, the average oil yield of low-oil rape varieties （with oil content below 42.00%） was 1 247.84 kg/hm2, while that of high-oil rape varieties was 1 442.60 kg/hm2, which was 15.61% more than the former. The average amount of applied nitrogen fertilizer required to obtain the highest oil yield for lower-oil rape varieties was 286.28 kg/hm2, and under this con- dition, the average oil yield of the low-oil rape varieties was 1 350.57 kg/hm2, while that of the high-oil varieties was 6.81% higher than it. There was a significant neg- ative correlation between rapeseed oil yield and the amount of applied nitrogen fer- tilizer to obtain the highest oil yield （0.980 0）. The optimum amount of applied ni- trogen, phosphate, potash and boron fertilizer were 187.5-195, 187.5-195, 105-120, 135-150 and 15-22.5 kg/hm2 for high-oil B. napus varieties. [Conclusion] This study determined the influence of sowing date, plant density and amount of applied nitro- gen fertilizer on oil yield of B. napus, and proposed an optimum cultivation pattern for high-oil varieties.
基金supported by the key research project for fig development of Weiyuan County(Grant No.1002-69199007),China.
文摘Fig fruit firmness decreases rapidly during ripening and after harvest,resulting in poor storability and transportation loss,which severely restricts development of the fresh fig industry.APETALA2/ethylene-responsive factor(AP2/ERF)transcription factors are downstream components of the ethylene-signaling pathway that play crucial roles in quality formation during fruit ripening.In this study,Ficus carica(Fc)ERF12 was clustered in repressor subfamily VIII of ERFs through phylogenetic analysis,and further recruited by its two EAR motifs and expression pattern during fig ripening.DNA affinity purification sequencing analysis indicated that FcERF12 binds to the promoter or gene body regions of multiple ripening-related genes,including cell wall-modification genes FcPG,FcXTH and FcPME,and ethylene-biosynthesis genes FcACS and FcACO.Yeast two-hybrid assay demonstrated that FcERF12 interacts with TOPLESS(TPL)co-repressors FcTPL1,FcTPL4 and FcTPL5,and histone deacetylases FcHDA6 and FcHDA19;interaction with FcTPL4 and FcTPL5 relied on the C-terminal EAR motif.Overexpressing FcERF12 in tomato did not change fruit size or yield,but resulted in an 18.37%increment in fruit firmness and a 49.62%reduction in ethylene-release rate at fruit ripening,accompanied by a significant decrease in seed number per fruit.Transcriptomic analysis revealed downregulation of tomato cell wallmodification genes SlPL,SlEXP and SlPG,and ethylene-synthesis genes SlACO and SlACS.Metabolomic profiling identified 82 differentially accumulated flavonoid metabolites,61 of them showing significantly decreased contents.Taken together,our results exhibit the negative regulatory role of FcERF12 in fig ethylene-signal transduction,providing new information on precise control of fruit firmness and other quality traits at ripening.
基金supported by the National Natural Science Foundation of China (30971773)the Natural Science Foundation of Hebei Province,China (C2011204031)the Key Laboratory of Crop Growth Regulation of Hebei Province,China
文摘Based on sequencing of part clones in a root subtractive cDNA library, an expressed sequence tag （EST） sharing high similarity to a rice C2H2 zinc finger transcription factor （ZFP15） was obtained in wheat. Through bioinformatics approach, the wheat C2H2-type ZFP gene referred to TaZFP15 has been identified and characterized. As a full-length cDNA of 670 bp, TaZFP15 has an open reading frame of 408 bp and encodes a 135-aa polypeptide. TaZFP15 contains two C2H2 zinc finger domains and each one has a conserved motif QALGGH. The typical L-box, generally identified in the C2H2 type transcription factors, has also been found in TaZFP15. Phylogenetic analysis suggested that TaZFP15 shares high similarities with rice ZFP15 （GenBank accession no. AY286473）, maize ZFP （GenBank accession no. NM_001159094） and a subset of other zinc-finger transcription factor genes in plant species. The expression of TaZFP15 was up-regulated by starved-Pi stress, showing a pattern to be gradually elevated along with the progression of the Pi-stress in a 23-h treatment regime. Similarly, the transcripts of TaZFP15 in roots were also induced by nitrogen deficiency, and abiotic stresses of drought and salinity. No responses of TaZFP15 were detected in roots to nutrition deficiencies of P, Zn, and Ca, and the external treatment of abscisic acid （ABA）. TaZFP15 could be specifically amplified in genome A, B, and D, and without variability in the sequences, suggesting that TaZFP15 has multi-copies in the homologous hexaploid species. Transgenic analysis in tobacco revealed that up-regulation of TaZFP15 could significantly improve plant dry mass accumulation via increasing the plant phosphorus acquisition capacity under Pi-deficiency condition. The results suggested that TaZFP15 is involved in mediation of signal transductions of diverse external stresses.
基金funded by the National Key Project for Research on Transgenic Biology, China (2016ZX08002-002)the Innovation Project of Chinese Academy of Agricultural Sciences
文摘Foxtail millet（Setaria italica（L.）P.Beauv）is a naturally stress tolerant crop.Compared to other gramineous crops,it has relatively stronger drought and lower nutrition stress tolerance traits.To date,the scope of functional genomics research in foxtail millet（S.italic L.）has been quite limited.NAC（NAM,ATAF1/2 and CUC2）-like transcription factors are known to be involved in various biological processes,including abiotic stress responses.In our previous foxtail millet（S.italic L.）RNA seq analysis,we found that the expression of a NAC-like transcription factor,SiNAC110,could be induced by drought stress;additionally,other references have reported that SiNAC110 expression could be induced by abiotic stress.So,we here selected SiNAC110 for further characterization and functional analysis.First,the predicted SiNAC110 protein encoded indicated SiNAC110 has a conserved NAM（no apical meristem）domain between the 11–139 amino acid positions.Phylogenetic analysis then indicated that SiNAC110 belongs to subfamily III of the NAC gene family.Subcellular localization analysis revealed that the SiNAC110-GFP fusion protein was localized to the nucleus in Arabidopsis protoplasts.Gene expression profiling analysis indicated that expression of SiNAC110 was induced by dehydration,high salinity and other abiotic stresses.Gene functional analysis using SiNAC110 overexpressed Arabidopsis plants indicated that,under drought and high salt stress conditions,the seed germination rate,root length,root surface area,fresh weight,and dry weight of the SiNAC110 overexpressed lines were significantly higher than the wild type（WT）,suggesting that the SiNAC110 overexpressed lines had enhanced tolerance to drought and high salt stresses.However,overexpression of SiN AC110 did not affect the sensitivity of SiNAC110 overexpressed lines to abscisic acid（ABA）treatment.Expression analysis of genes involved in proline synthesis,Na＋/K＋transport,drought responses,and aqueous transport proteins were higher in the SiNAC110overexpressed lines than in the WT,whereas expression of ABA-dependent pathway genes did not change.These results indicated that overexpression of SiNAC110 conferred tolerance to drought and high salt stresses,likely through influencing the regulation of proline biosynthesis,ion homeostasis and osmotic balance.Therefore,SiNAC110 appears to function in the ABA-independent abiotic stress response pathway in plants.
基金This work was supported by NNSF. RFDP and NNSF of shandong province(Z2000A02 ).
文摘Let G be a bipartite graph with vertex set V(G) and edge set E(G), and let g and f be two positive integer-valued functions defined on V(G) such that g(x) ≤ f(x) for every vertex x of V(G). Then a (g, f)-factor of G is a spanning subgraph H of G such that g(x) ≤ dH(x) 5 f(x) for each x ∈ V(H). A (g, f)-factorization of G is a partition of E(G) into edge-disjoint (g, f)-factors. Let F = {F1, F2,…… ， Fm } and H be a factorization and a subgraph of G, respectively. If F, 1 ≤ i ≤ m， has exactly one edge in common with H, then it is said that ■ is orthogonal to H. It is proved that every bipartite (mg + m - 1, mf - m + 1 )-graph G has a (g, f)-factorization orthogonal to k vertex disjoint m-subgraphs of G if 2-k ≤ g(x) for all x ∈ V(G). Furthermore, it is showed that the results in this paper are best possible.
基金supported by the National Natural Science Foundation of China (31471444,31401327)the Special Fund for Agro-scientific Research in the Public Interest of China (Impact of Climate Change on Agriculture Production,201203096)the Jiangsu Overseas Research and Training Program for University Prominent Young and Middle-aged Teachers and President,China (2016)
文摘Cotton growth and development are determined and influenced by cultivars, meteorological conditions, and management practices. The objective of this study was to quantify the optimum of temperature-light meteorological factors for seedcotton biomass per boll with respect to boll positions. Field experiments were conducted using two cultivars of Kemian 1 and Sumian 15 with three planting dates of 25 April （mean daily temperature （MDT） was 28.0 and 25.4°C in 2010 and 2011, respectively）, 25 May （MDT was 22.5 and 21.2°C in 2010 and 2011, respectively）, and 10 Jun （MDT was 18.7 and 17.9°C in 2010 and 2011, respectively）, and under three shading levels （crop relative light rates （CRLR） were 100, 80, and 60％） during 2010 and 2011 cotton boll development period （from anthesis to boll open stages）. The main meteorological factors （temperature and light） affected seedcotton biomass per boll differently among different boll positions and cultivars. Mean daily radiation （MDR） affected seedcotton biomass per boll at all boll positions, except fruiting branch 2 （FB2） fruting node 1 （FN1）. However, its influence was less than temperature factors, especially growing degree-days （GDD）. Optimum mean daily maximum temperature （MDTmax） for seedcotton biomass per boll at FB11FN3 was 29.9-32.4°C, and the optimum MDR at aforementioned position was 15.8-17.5 MJ m-2. Definitely, these results can contribute to future cultural practices such as rational cultivars choice and distribution, simplifying field managements and mechanization to acquire more efficient and economical cotton management.
文摘Among APETALA2 (AP2)-type plant specific transcription factor family, WRINKLED1 (WRI1), has appeared to be a master gene transcriptionally regulating a set of carbon metabolism- and fatty acid synthesis (FAS)-related genes responsible for seed specific triacylglycerols (TAGs) storage in oil plants. B3 type transcription factors, such as ABI3 and FUS3, are known to be involved in seed development, such as seed storage protein synthesis and maturation. Based on the recent whole genome sequence data of castor bean (Ricinus communis L.), putative WRI1 homologs (RcWRI1, RcWRI2) specifically expressed in castor bean seed have been identified by comparing organ specific expression profiles among seed development-related transcription factors, seed storage specific genes (Ricin, RcOleosin) and a set of FAS genes including genes for sucrose synthase (RcSUS2), biotin carboxyl carrier protein (a subunit of acetyl-CoA carboxylase, RcBCCP2) and ketoacyl-acyl carrier protein synthase (RcKAS1). Immunoreactive signals with WRI1, FUS3 and ABI5-related polypeptides were also detected in seed specifically, consistent with the expression profiles of seed development-related genes. The WRI1 binding consensus sites, [CnTnG](n)(7)[CG], designated as the AW-box, were found at the promoter region of RcBCCP2 and RcKAS1. Thus, RcWRI1 possibly play a pivotal role in seed specific TAGs storage during seed development by directly activating FAS -related genes.
基金supported in part by the National Natural Science Foundation of China(61702475,61772493,61902370,62002337)in part by the Natural Science Foundation of Chongqing,China(cstc2019jcyj-msxmX0578,cstc2019jcyjjqX0013)+1 种基金in part by the Chinese Academy of Sciences“Light of West China”Program,in part by the Pioneer Hundred Talents Program of Chinese Academy of Sciencesby Technology Innovation and Application Development Project of Chongqing,China(cstc2019jscx-fxydX0027)。
文摘High-dimensional and sparse(HiDS)matrices commonly arise in various industrial applications,e.g.,recommender systems(RSs),social networks,and wireless sensor networks.Since they contain rich information,how to accurately represent them is of great significance.A latent factor(LF)model is one of the most popular and successful ways to address this issue.Current LF models mostly adopt L2-norm-oriented Loss to represent an HiDS matrix,i.e.,they sum the errors between observed data and predicted ones with L2-norm.Yet L2-norm is sensitive to outlier data.Unfortunately,outlier data usually exist in such matrices.For example,an HiDS matrix from RSs commonly contains many outlier ratings due to some heedless/malicious users.To address this issue,this work proposes a smooth L1-norm-oriented latent factor(SL-LF)model.Its main idea is to adopt smooth L1-norm rather than L2-norm to form its Loss,making it have both strong robustness and high accuracy in predicting the missing data of an HiDS matrix.Experimental results on eight HiDS matrices generated by industrial applications verify that the proposed SL-LF model not only is robust to the outlier data but also has significantly higher prediction accuracy than state-of-the-art models when they are used to predict the missing data of HiDS matrices.
文摘The soybean cultivar Yudou25 was sown at 5 locations of Henan Province on 13 differentdates in 2001 and 2002. The data of isoflavone contents for the 109 samples of soybeanseed and 33 eco-physiological factors including meteorological factors, soil nutritionand altitudes were received and used for statistical analysis. The step-wise regressionwas used to screen the correlated factors, which significantly effected isoflavonecontents. Results showed that 9 eco-physiological factors were highly correlated withisoflavones. Low mean temperature, high diurnal temperature range at seed filling andmaturity, more sunlight hours and low mean temperature at emergence were favorable toisoflavone accumulation. The rainfall at emergence showed a nonlinear relationship withisoflavone content and its optimum value was 75 mm for isoflavone formation. Low diurnaltemperature range at branching, high organic matter and low sulfur content in soil weresuitable for the formation of isoflavones. The isoflavone contents would not be affectedby other eco-physiological factors in this study.
基金Acknowledgements This work was supported by grants from the National Natural Science Foundation of China （No. 30971259）, and the Scientific and Technological Innovation Fund for Young Investigation, Chinese PLA General Hospital （No. 09KMM23）.
文摘Warfarin is a commonly used anticoagulant with a narrow therapeutic range and risk of hemorrhagic complications. After CYP2C9 and VKORC1, CYP4F2 was confirmed as the third principle genetic determinant of warfarin dose variability.
