Background:Corchorus olitorius L.(Malvaceae)is a green leafy vegetable widely consumed in the Middle East and valued for its rich nutritional content.Its essential oils,an important class of secondary metabolites,are ...Background:Corchorus olitorius L.(Malvaceae)is a green leafy vegetable widely consumed in the Middle East and valued for its rich nutritional content.Its essential oils,an important class of secondary metabolites,are of growing interest for potential use in cosmetics and fragrance industries due to their bioactive properties.Methods:Leaves of C.olitorius cultivated in Egypt were extracted using microwave-assisted hydrodistillation(MAHD)and conventional hydrodistillation(HD).The oils were analyzed by gas chromatography-mass spectrometry(GC-MS)to characterize their chemical profiles.In vitro assays were conducted to evaluate their anti-elastase and anti-collagenase activities,and in silico studies were performed to predict the pharmacokinetic and pharmacodynamic properties of major constituents.Results:GC-MS analysis showed that aldehydes,alkanes,fatty alcohols,fatty acids,and their derivatives were the predominant compound classes in both oils.Notably,oxygenated diterpenes(11.22%)were present exclusively in the MAHD oil,while triterpenoids(16.37%)were found only in the HD oil.The MAHD oil demonstrated stronger In vitro anti-elastase(IC_(50)=42.5μg/mL)and anti-collagenase(IC_(50)=131.5μg/mL)activities compared to the HD oil(IC_(50)=66.7 and 206.8μg/mL,respectively),reflecting an approximate 36.3%improvement in elastase inhibition and 36.4%improvement in collagenase inhibition.In silico docking indicated that the triterpenoidβ-amyrin acetate showed the highest predicted binding affinity for porcine pancreatic elastase(PDB ID:6QEO,ΔG=−8.1 kcal/mol)and collagenase(PDB ID:456C,ΔG=−9.1 kcal/mol)among the major compounds analyzed.Conclusion:These findings demonstrate that MAHD is a greener and more efficient extraction method,yielding oil with enhanced enzyme inhibitory activity compared to conventional HD.The promising anti-elastase and anti-collagenase properties suggest that C.olitorius MAHD oil could serve as a potential candidate for anti-aging cosmetic formulations,following further validation.展开更多
A study was conducted to determine the effects of elevated CO2 on soil N process at Changbai Mountain in Jilin Province, northeastern China （42°24＂N, 128°06＂E, and 738 m elevation）. A randomized complete...A study was conducted to determine the effects of elevated CO2 on soil N process at Changbai Mountain in Jilin Province, northeastern China （42°24＂N, 128°06＂E, and 738 m elevation）. A randomized complete block design of ambient and elevated CO2 was established in an open-top chamber facility in the spring of 1999. Changpai Scotch pine （Pinus sylvestris var. sylvestriformis seeds were sowed in May, 1999 and CO2 fumigation treatments began after seeds germination. In each year, the exposure started at the end of April and stopped at the end of October. Soil samples were collected in June and August 2006 and in June 2007, and soil nitrifying, denitrifying and N2-fixing enzyme activities were measured. Results show that soil nitrifying enzyme activities （NEA） in the 5-10 cm soil layer were significantly increased at elevated CO2 by 30.3% in June 2006, by 30.9% in August 2006 and by 11.3% in June 2007. Soil denitrifying enzyme activities （DEA） were significantly decreased by elevated CO2 treatment in June 2006 （P 〈 0.012） and August 2006 （P 〈 0.005） samplings in our study; no significant difference was detected in June 2007, and no significant changes in N2-fixing enzyme activity were found. This study suggests that elevated CO2 can alter soil nitrifying enzyme and denitrifying enzyme activities.展开更多
Background The environmental impact of feedlot operations is a growing concern,as cattle excrete a significant portion of feed nutrients as waste.Exogenous feed enzymes(EFE)have gained interest for their potential to ...Background The environmental impact of feedlot operations is a growing concern,as cattle excrete a significant portion of feed nutrients as waste.Exogenous feed enzymes(EFE)have gained interest for their potential to enhance feed efficiency in ruminants by improving nutrient digestion.However,EFE effects on ruminal parameters have shown inconsistencies,with limited research on nitrogen metabolism and rumen microbiome impacts.Moreover,the synergistic effects of combining different EFEs remain unclear.This study aimed to evaluate the effects of individual and combined EFE products in feedlot diets on ruminal fermentation parameters,nitrogen metabolism,and ruminal microbial communities.Ten rumen-cannulated Nellore steers[543±28.6 kg of body weight(BW)]were distributed in a replicated Latin-square design(5×5)in individual pens.Treatments included:control(CON,no EFE supplementation),amylase[AML,0.5 g/kg of diet dry matter(DM)],xylanase(FBL,0.9 g/kg DM),half dose combination(HD,0.25 g of AML+0.45 g of FBL/kg of DM),and full dose combination(FD,0.5 g of AML+0.90 g of FBL/kg of DM).The experimental period lasted 19 d and included total urine and feces collection(d 15 to 18)and rumen fluid sampling(d 19)at 0,4,8,12,and 16 h post-feeding for ammonia,volatile fatty acids(VFA),pH and microbiome analysis.Results EFE supplemented animals exhibited lower ruminal ammonia concentrations(P=0.040),and higher acetate proportions(P<0.001)compared to the control group.EFE supplementation resulted in reduced nitrogen(N)excretion in feces(P=0.049)and urine(P=0.036),contributing to improved N retention and efficiency(P=0.045).Additionally,EFE products induced shifts in various microbial taxa at family and genera levels(P≤0.10),which may be associated with the changes observed in ruminal fermentation.Conclusions Our findings demonstrate that EFE supplementation enhances nitrogen retention,reduces ruminal ammonia,and alters ruminal fermentation profiles and microbial populations in feedlot cattle.While the expected synergism between amylase and xylanase did not significantly impact rumen fermentation parameters,it did induce shifts in the rumen microbiome.These results suggest that EFE supplementation may be a promising strategy for improving nutrient utilization and potentially reducing the environmental impact of feedlot operations.展开更多
Natural enzymes are able to precisely bind substrates and catalyze activities because of their distinct framework structures.To mimic this ability,chemists are designing framework structures that resemble real enzymes...Natural enzymes are able to precisely bind substrates and catalyze activities because of their distinct framework structures.To mimic this ability,chemists are designing framework structures that resemble real enzymes.The use of metal-organic frameworks(MOFs)to mimic natural enzymes has advanced recently;this paper reviews these developments.This research specifically focuses on how the catalytically active center of natural enzymes can be exactly replicated by carefully controlling the composition and structure of MOFs.By identifying and attaching to substrates,MOFs can accelerate changes in a manner akin to that of real enzymes.The role of MOFs in simulating catalytic processes,enzyme activity,and potential uses in brain chemistry are also investigated in this work.It also discusses the most recent MOF applications in detecting and treating chemical abnormalities of the brain.The report finishes with a discussion of future research areas and potential applications,providing useful insights for researchers in the subject.展开更多
Constructing a framework carrier to stabilize protein conformation,induce high embedding efficiency,and acquire low mass-transfer resistance is an urgent issue in the development of immobilized enzymes.Hydrogen-bonded...Constructing a framework carrier to stabilize protein conformation,induce high embedding efficiency,and acquire low mass-transfer resistance is an urgent issue in the development of immobilized enzymes.Hydrogen-bonded organic frameworks(HOFs)have promising application potential for embedding enzymes.In fact,no metal involvement is required,and HOFs exhibit superior biocompatibility,and free access to substrates in mesoporous channels.Herein,a facile in situ growth approach was proposed for the self-assembly of alcohol dehydrogenase encapsulated in HOF.The micron-scale bio-catalytic composite was rapidly synthesized under mild conditions(aqueous phase and ambient temperature)with a controllable embedding rate.The high crystallinity and periodic arrangement channels of HOF were preserved at a high enzyme encapsulation efficiency of 59%.This bio-composite improved the tolerance of the enzyme to the acid-base environment and retained 81%of its initial activity after five cycles of batch hydrogenation involving NADH coenzyme.Based on this controllably synthesized bio-catalytic material and a common lipase,we further developed a two-stage cascade microchemical system and achieved the continuous production of chiral hydroxybutyric acid(R-3-HBA).展开更多
Severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)enters host cells via the angiotensin-converting enzyme 2(ACE2)receptor.Mounting evidence has indicated the presence of hepatic SARS-CoV-2 infection and liver...Severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)enters host cells via the angiotensin-converting enzyme 2(ACE2)receptor.Mounting evidence has indicated the presence of hepatic SARS-CoV-2 infection and liver injury in pa-tients with coronavirus disease 2019(COVID-19).Understanding the mechanisms of hepatic SARS-CoV-2 infection is crucial for addressing COVID-19–related liver pathology and developing targeted therapies.This editorial discusses the signi-ficance of ACE2 in hepatic SARS-CoV-2 infection,drawing on the research by Jacobs et al.Their findings indicate that hepatic ACE2 expression,frequency of hepatic SARS-CoV-2 infection,and severity of liver injury are elevated in patients with pre-existing chronic liver diseases.These data suggest that hepatic ACE2 could be a promising therapeutic target for COVID-19.展开更多
In recent years,chiral inorganic nanomaterials have become promising candidates for applications in sensing,catalysis,biomedicine,and photonics.Plasmonic nanomaterials with an intrinsic chiral structure exhibit intrig...In recent years,chiral inorganic nanomaterials have become promising candidates for applications in sensing,catalysis,biomedicine,and photonics.Plasmonic nanomaterials with an intrinsic chiral structure exhibit intriguing geometry‑dependent optical chirality,which benefits the combination of plasmonic characteristics with chirality.Recent advances in the biomolecule‑directed geometric control of intrinsically chiral plasmonic nanomaterials have further provided great opportunities for their widespread applications in many emerging technological areas.In this review,we present the recent progress in biosensing using chiral inorganic nanomaterials,with a particular focus on electrochemical and enzyme‑mimicking catalytic approaches.This paper commences with a review of the basic tenets underlying chiral nanocatalysts,incorporating the chiral ligand‑induced mechanism and the architectures of intrinsically chiral nanostructures.Additionally,it methodically expounds upon the applications of chiral nanocatalysts in the realms of electrochemical biosensing and enzyme‑mimicking catalytic biosensing respectively.Conclusively,it proffers a prospective view of the hurdles and prospects that accompany the deployment of chiral nanoprobes for nascent biosensing applications.By rational design of the chiral nanoprobes,it is envisioned that biosensing with increasing sensitivity and resolution toward the single‑molecule level can be achieved,which will substantially promote sensing applications in many emerging interdisciplinary areas.展开更多
UBE2O is a distinctive ubiquitin-conjugating enzyme characterized by its large size(1292 residues)and dual E2/E3 enzymatic activities,enabling diverse ubiquitylation types.Unlike typical E2 enzymes(150~200 residues),U...UBE2O is a distinctive ubiquitin-conjugating enzyme characterized by its large size(1292 residues)and dual E2/E3 enzymatic activities,enabling diverse ubiquitylation types.Unlike typical E2 enzymes(150~200 residues),UBE2O’s multifunctionality allows it to regulate substrate degradation,subcellular localization,and functional modulation.Emerging studies highlight its critical roles in protein quality control,erythroid differentiation,metabolic regulation,and maintenance of circadian rhythm.Dysregulation of UBE2O is implicated in various diseases,including cancers,neurodegenerative disorders,and metabolic diseases.This review extensively discusses the unique structural features,diverse biological functions,and pathological roles of UBE2O,as well as its therapeutic potential for associated diseases.展开更多
[Objectives]To prepare four kinds of fruit enzymes from pitaya(dragon fruit),papaya,orange and pineapple,and to detect their physicochemical properties and antioxidant activities.[Methods]Using pitaya,papaya,orange an...[Objectives]To prepare four kinds of fruit enzymes from pitaya(dragon fruit),papaya,orange and pineapple,and to detect their physicochemical properties and antioxidant activities.[Methods]Using pitaya,papaya,orange and pineapple as raw materials,pitaya enzyme,papaya enzyme,orange enzyme and pineapple enzyme were obtained by natural fermentation.The physical and chemical properties and antioxidant activity of the four fruit enzymes were analyzed,and the dominant strains in papaya ferment were identified.[Results]The pH of the four fruit enzymes ranged from 3.32 to 3.59.The sensory evaluation of orange and papaya enzymes was relatively superior;among them,the orange enzyme exhibited the highest hydroxyl radical scavenging rate(95.76%),while the pineapple enzyme had the highest total phenol content(27.21μg/mL).The papaya enzyme showed the highest values for DPPH,reducing power,and flavonoids,at 70.55,1.699,and 0.1216 mg/mL,respectively.Through the comprehensive comparing,the physicochemical properties and antioxidant activity of the papaya enzyme were relatively superior,with its dominant microbial species being Lactobacillus and Saccharomyces cerevisiae.[Conclusions]Papaya enzyme is a kind of functional food with great development potential,and this study can provide reference for the development of fruit enzyme with high added value.展开更多
Directed degradation of abundant renewable lignin into small aromatic compounds is crucial for lignin valorization but challenging.The degradation of lignin in natural environments typically involves multienzyme syner...Directed degradation of abundant renewable lignin into small aromatic compounds is crucial for lignin valorization but challenging.The degradation of lignin in natural environments typically involves multienzyme synergy.However,the proteinaceous characteristics of lignin-degrading enzymes restrict their accessibility to certain regions of intricate lignin,resulting in the multienzyme systems being unable to fully demonstrate their effectiveness.Herein,a de novo biomimetic enzyme-nanozyme hybrid system was constructed by combiningλ-MnO_(2) nanozyme with laccase CotA from Bacillus subtilis,aimed at facilitating lignin degradation under mild conditions.The lignin degradation rate of the CotA+λ-MnO_(2) hybrid system was determined to be 25.15%,which was much higher than those of the lignin degradation systems with only laccase CotA(15.32%)orλ-MnO_(2) nanozyme(14.90%).Notably,the proportion of aromatic chemicals in the products derived from the hybrid system reached as much as 48%,which was 41.2%and 118.2%higher than those of the CotA-andλ-MnO_(2)-catalyzed systems,respectively.Analysis of products mapping and lignin structure changes suggested that the higher proportion of aromatic compounds in the CotA+λ-MnO_(2)hybrid system was more likely to benefit from the laccase-mediated methoxylation.Moreover,electron paramagnetic resonance analysis indicated that the intensity and kind of free radicals such as·OH and·O_(2)^(-)are closely linked to the degradation rate and reaction type.This work is the inaugural application of an enzyme-nanozyme hybrid system for lignin degradation,demonstrating the potential of the synergistic interaction between enzyme and nanozyme in the directed degradation of lignin.展开更多
The valorization of vegetable by-products is a promising strategy to combat climate change and achieve global carbon neutrality goals.This study aimed to exploit the high-value utilization of garlic by-products and to...The valorization of vegetable by-products is a promising strategy to combat climate change and achieve global carbon neutrality goals.This study aimed to exploit the high-value utilization of garlic by-products and to investigate the antihypertensive effects and potential mechanisms of the resulting angiotensin I-converting enzyme(ACE)inhibitory peptides.After protein extraction,enzymatic hydrolysis,and activity-directed fractionation,a potent and highly stable ACE inhibitory peptide(IC_(50):31.38μmol/L)was obtained,which was identified as VWAS and acted as a competitive inhibitor.VWAS stably bound to key residues in the ACE active center mainly through hydrogen bonding interactions and effectively lowered blood pressure in spontaneously hypertensive rats via alleviating renal and cardiac injuries,improving endothelial dysfunction,and regulating the renal renin-angiotensin system,antioxidant system,and anti-inflammatory system.These findings suggested that garlic protein-derived peptide(VWAS)was a desirable candidate for antihypertensive functional foods and provided guidance for the high-value utilization of garlic by-products.展开更多
In order to explore the remediation effects of lignite and biochar on Zn-contaminated soil,this experiment studied the impacts of adding lignite and biochar on soil respiration,soil enzyme activity,and organic carbon ...In order to explore the remediation effects of lignite and biochar on Zn-contaminated soil,this experiment studied the impacts of adding lignite and biochar on soil respiration,soil enzyme activity,and organic carbon in Zn-contaminated soil through soil culture experiments,which provided a theoretical basis for the remediation and improvement as well as for the development and utilization of Zn-contaminated soil.The study was an L8(4×2^(2))orthogonal experimental design with eight treatments,in which there were four levels of Zn contamination concentration(Z0:0;Z1:125 mg•kg^(-1);Z2:250 mg•kg^(-1);Z3:500 mg•kg^(-1)),low-Zn(125-250 mg•kg^(-1))and high-Zn(500 mg•kg^(-1)),two levels of lignite(H0:0;H1:13.33 g•kg^(-1)),two levels of biochar(C0:0;C1:3.33 g•kg^(-1)),with four replicates per treatment.The results showed that lignite or biochar and their interaction had extremely significant effects on both respiration rate and accumulation in Zn-contaminated soil.Among the high Zn-contaminated treatments,the mixed application of lignite and biochar(Z3H1C1 treatment)had the fastest soil respiration rate and the highest soil respiration accumulation.Lignite,biochar and their interaction had significant or extremely significant effects on sucrase,catalase and polyphenol oxidase activities in Zn-contaminated soil.Among the high Zn-contaminated treatments(Z3),the addition of biochar alone had the most significant effects on the increase of soil sucrase and catalase enzyme activities,while the mixed application of lignite and biochar had the most significant effects on the increase of soil polyphenol oxidase activity.Lignite,biochar and their interaction had significant or extremely significant effects on the total organic carbon,active organic carbon and microbial carbon content of Zn-contaminated soils.Soil total organic carbon content in general peaked at day 80.Among the high Zn-contaminated treatments,the addition of biochar alone had the most significant effects on the total organic carbon content of the soil,while the mixed application of lignite and biochar had the most significant effect on the microbiomass carbon content.展开更多
This study was conducted at the scientific center of Brazzaville. The objective was to assess the microbial characteristics and enzymes activities in the rhizosphere soil of Cajanus cajan and Milletia lauurentii. Thes...This study was conducted at the scientific center of Brazzaville. The objective was to assess the microbial characteristics and enzymes activities in the rhizosphere soil of Cajanus cajan and Milletia lauurentii. These plants have great importance in food and forestry. Microbial diversity management in the rhizosphere is the key for sustainable crop production or forest durability. DNA metagenomic sequencing was used to analyze the whole bacterial diversity, the microbial biomass was determinate by the fumigation-extraction method and the enzymes by the p-nitrophenol-β-D-glucoside for β-glucosidase, the p-nitrophenyl-N-acetyl-β-D-glucosaminide for β-Glucosaminidase. Dehydrogenase and acid phosphatase were quantified using 2,3,5-tryphenyl tetrazolium chloride and p-nitophenylphosphate respectively. The results show that, in Cajanus cajan culturable bacteria genera were mainly Acidobacterium, Skermanella, Rhodoplanes, Bacillus, Chloroflexus, Steroidobacter, Sphingomonas and Bradyrhizobium while in Milletia laurentii: Rhodoplanes, Bradyrhizobium, Bacillus, Sphingobacterium, Acidobacterium, Mesorhizobium, Nitrospira were the principal genera. In the two rhizosphere soils investigated, the uncultured bacteria exhibited relatively higher abundance, often for the same genera, than culturable bacteria. Metagenomic studies have revealed more bacterial diversity in each compared to when culturable bacteria were taken into account alone. The MBC and MBN were higher in the rhizosphere of Milletia than in rhizosphere of Cajanus. The same trend was observed with the enzyme activities. PCA of culturable and NMDS of unculturable soil bacteria genera shows that factors mainly involved in the carbon cycle such as MBC, members of the microbial community i.e. Acidobacterium, Skermanella, Chloroflexus, sand, C, β-glucosaminidase and dehydrogenase, were strongly correlated with Cajanus cajan. On the other hand, the MBN, Mesorhizobium, Bradyrhizobium, Burkholderia, Nitrospira, Nitratireductor, N, NH4, β-glucosidase and acid phosphatase involved in the N cycling, silt and clay were predominantly founded in the rhizosphere soil of Milletia laurentii. This study showed that metagenomic sequencing could improve the assessment of the microbial diversity structure of the rhizosphere.展开更多
The problem of soil polycyclic aromatic hydrocarbon(PAH)pollution in coking plant sites has been widely studied in recent years,but there is a lack of research on the correlation between soil microorganisms,soil metab...The problem of soil polycyclic aromatic hydrocarbon(PAH)pollution in coking plant sites has been widely studied in recent years,but there is a lack of research on the correlation between soil microorganisms,soil metabolomics,and soil properties.Thus,in this study,the long-term impact of coke combustion on soil microbial community structure,enzyme activities,and metabolic pathways within a former coking plant site was investigated.Soil samples were collected from both the coking production area(CA group)and office area(OLA group),approximately 0 to 20 cm in depth.Compared with OLA group,elevated levels of 16 PAHs in the list of US EPA were detected by gas chromatography-mass spectrometry in the CA group.Several dominant microorganisms,such as Altererythrobacter,Lysobacter,and Sulfurifustis,were identified by 16 s ribosomal DNA sequencing in the CA group.The fatty acid biosynthesis pathway exhibited specific inhibition,while the phenylalanine metabolic pathwaywas promoted in response to PAH stress.Long-term PAH exposure led to the inhibition of soil urease activity.The co-occurrence network ofmicroorganisms revealed intricate patterns of co-metabolism and co-adaptation within complex bacterial communities,facilitating their adaptation to and decomposition of soil-borne PAHs.This research could provide valuable insights into the community characteristics andmetabolic mechanisms of microorganisms inhabiting PAH-polluted soil within coking plant sites.The findings enhance our understanding of the indigenous soil microbiome and its intricate network dynamics under the persistent stress of PAHs,contributing to a more comprehensive knowledge of soil ecosystems in such environments.展开更多
Background Intestinal oxidative stress serves as an endogenous host defense against the gut microbiota by increas-ing energy expenditure and therefore decreasing feed efficiency(FE).Several systems coordinately regula...Background Intestinal oxidative stress serves as an endogenous host defense against the gut microbiota by increas-ing energy expenditure and therefore decreasing feed efficiency(FE).Several systems coordinately regulate redox bal-ance,including the mitochondrial respiratory chain,nicotinamide adenine dinucleotide phosphate(NADPH)oxidase,and different antioxidants.However,it remains unclear which redox balance compartments in the intestine are crucial for determining FE.Results In this study,we first screened the key targets of different metabolites and redox balance-related gene expression in broiler ceca.We then constructed a mouse colitis model to explore malic acid(MA)ability to allevi-ate intestinal inflammation.We further used controlled release technology to coat MA and investigated its effects on the intestinal redox status and FE in vivo.Finally,we examined the underlying mechanism by which MA modulated redox status using a porcine intestinal epithelial cell jejunum 2(IPEC-J2)cell model in vitro.Our results demonstrated that the MA/malic enzyme 3(ME3)pathway may play an important role in reducing oxidative stress in the broiler cecum.In addition,colon infusion of MA attenuated inflammatory phenotypes in the dextran sulfate sodium salt(DSS)induced mouse colitis model.Then,dietary supplementation with controlled-release MA pellet(MAP)reduced the feed to gain(F/G)ratio and promoted chicken growth,with reduced oxidative stress and increased bacterial diver-sity.Finally,the in vitro IPEC-J2 cell model revealed that ME3 mediated the effect of MA on cellular oxidative stress.Conclusion In summary,our study firstly revealed the important role of the MA/ME3 system in the hindgut of broiler chickens for improving intestinal health and FE,which may also be crucial for the implications of colon inflammation associated diseases.展开更多
The objective of this incubation study was to comprehensively evaluate the effects of organic fertilizer and biochar,both individually and in combination,on soil respiration dynamics,key enzyme activities and the conc...The objective of this incubation study was to comprehensively evaluate the effects of organic fertilizer and biochar,both individually and in combination,on soil respiration dynamics,key enzyme activities and the concentrations of various organic carbon components in degraded mollisol.This study used a completely randomized factorial design with three application rates of organic fertilizer(M0:0,M1:13.64 g·kg^(-1),M2:27.27 g·kg^(-1))and biochar(C0:0,C1:1.36 g·kg^(-1),C2:2.73 g·kg^(-1)),resulting in nine treatments with four replicates each.Soil CO_(2) flux,organic carbon fractions including the total,active and microbial biomass carbon,and enzyme activities(sucrase,catalase and polyphenol oxidase)were measured over 120 days.Results indicated that the factors and their interactions significantly influenced all measured parameters.Soil respiration peaked at day 15,with M1C2 treatment exhibiting a rate of 10.90-fold higher than the control.The concentrations of the total,active and microbial biomass organic carbon reached maximum values on days 60,30 and 80,respectively.Notably,M2C1 treatment yielded the highest total organic carbon(86.35%increase)and microbial biomass carbon(17.84%increase).Enzyme activities were significantly enhanced,with the highest catalase activity observed for M0C2 treatment(10.14%increase).These results demonstrated that the co-application of organic fertilizer and biochar was a effective strategy for improving soil biological health and promoting carbon sequestration in degraded mollisol.The treatment combining a high rate of organic fertilizer with a low rate of biochar(M2C1)was identified as the most promising amendment strategy for fertility restoration.展开更多
Bigeye tuna is a protein-rich fish that is susceptible to spoilage during cold storage,however,there is limited information on untargeted metabolomic profiling of bigeye tuna concerning spoilage-associated enzymes and...Bigeye tuna is a protein-rich fish that is susceptible to spoilage during cold storage,however,there is limited information on untargeted metabolomic profiling of bigeye tuna concerning spoilage-associated enzymes and metabolites.This study aimed to investigate how cold storage affects enzyme activities,nutrient composition,tissue microstructures and spoilage metabolites of bigeye tuna.The activities of cathepsins B,H,L increased,while Na^(+)/K^(+)-ATPase and Mg^(2+)-ATPase decreased,α-glucosidase,lipase and lipoxygenase first increased and then decreased during cold storage,suggesting that proteins undergo degradation and ATP metabolism occurs at a faster rate during cold storage.Nutrient composition(moisture and lipid content),total amino acids decreased,suggesting that the nutritional value of bigeye tuna was reduced.Besides,a logistic regression equation has been established as a food analysis tool and assesses the dynamics and correlation of the enzyme of bigeye tuna during cold storage.Based on untargeted metabolomic profiling analysis,a total of 524 metabolites were identified in the bigeye tuna contained several spoilage metabolites involved in lipid metabolism(glycerophosphocholine and choline phosphate),amino acid metabolism(L-histidine,5-deoxy-5′-(methylthio)adenosine,5-methylthioadenosine),carbohydrate metabolism(D-gluconic acid,α-D-fructose 1,6-bisphosphate,D-glyceraldehyde 3-phosphate).The results of tissue microstructures of tuna showed a looser network and visible deterioration of tissue fiber during cold storage.Therefore,metabolomic analysis and tissue microstructures provide insight into the spoilage mechanism investigations on bigeye tuna during cold storage.展开更多
The acetylpolyamine oxidase(APAO),spermine oxidase(SMO),and spermidine/spermine N1-acetyltransferase(SSAT)are pivotal enzymes in polyamine metabolism,exerting direct influence on polyamine homeostasis regulation.Dysfu...The acetylpolyamine oxidase(APAO),spermine oxidase(SMO),and spermidine/spermine N1-acetyltransferase(SSAT)are pivotal enzymes in polyamine metabolism,exerting direct influence on polyamine homeostasis regulation.Dysfunctions in these enzymes are intricately linked to inflammatory diseases and cancers.Establishing their three-dimensional structures is essential for exploring enzymatic catalytic mechanisms and designing inhibitors at the atomic level.This article primarily assesses the precision of AlphaFold2 and molecular dynamics simulations in determining the three-dimensional structures of these enzymes,utilizing protein conformation rationality assessment,residue correlation matrix,and other techniques.This provides robust models for subsequent polyamine catabolic metabolism calculations and offers valuable insights for modeling proteins that have yet to acquire crystal structures.展开更多
Rice seed germination marks the start of cultivation and influences subsequent seedling growth,and is affected by hormones and environmental factors.Ubiquitination plays a critical role in this process by regulating h...Rice seed germination marks the start of cultivation and influences subsequent seedling growth,and is affected by hormones and environmental factors.Ubiquitination plays a critical role in this process by regulating hormonal homeostasis.In the ubiquitination cascade,ubiquitin-conjugating enzymes(UBCs)function as ubiquitin carriers to determine linkage specificity of ubiquitin chains.In rice(Oryza sativa),39 UBC genes are identified,but only one gene OsUBC12 has been functionally studied to promote seed germination under low-temperatures in japonica rice.To elucidate the role of UBCs in seed germination,we generated CRISPR-Cas9 mutants for 23 UBC genes and overexpressed 20 members in rice.Among them,seven UBC genes(OsUBC4/6/7/12/25/27/48)were found to regulate seed germination,with OsUBC27 and OsUBC48 acting through the ABA pathway.Exogenous ABA inhibitors restored the germination rate of osubc27^(CR).RT-qPCR analysis revealed that the ABA synthesis genes OsNCED1-5 were significantly upregulated in the mutants.Further differential ubiquitination proteomics in knockout mutants and wild-type plants showed that OsUBC27 regulates ABA homeostasis by modulating ubiquitination of the ABA-degrading protein OsABA8ox1,thereby balancing seed dormancy and germination.Sequence analysis identified distinct haplotypes of the seven OsUBCs that showed differential distribution between japonica and indica subspecies.Our study provides valuable molecular targets for developing rice varieties resistant to seed vivipary.展开更多
To investigate the correlation between propacetamol and postoperative liver enzyme abnormalities among patients,a retrospective analysis was conducted on inpatients in the thoracic surgery department spanning from Jan...To investigate the correlation between propacetamol and postoperative liver enzyme abnormalities among patients,a retrospective analysis was conducted on inpatients in the thoracic surgery department spanning from January 1 to June 30,2023.Causality assessment regarding propacetamol and postoperative liver enzyme abnormalities was performed using the updated Roussel Uclaf Causality Assessment Method(RUCAM).Furthermore,independent risk factors for liver enzyme abnormalities were identified through both univariate and multivariate analyses,followed by the construction and validation of a clinical nomogram.A total of 247 patients who received propacetamol were ultimately included in the study.Liver enzyme abnormalities post-surgery were more accurately predicted by considering the daily dose of propacetamol and the number of medications(OR(95%CI),4.831(2.797,8.344),P<0.001;10.007(3.878,25.823),P<0.001).A clinical predictive nomogram model was developed,incorporating these two independent risk factors,which exhibited favorable discrimination(AUC(95%CI),0.811(0.750,0.872)),calibration,and decision curve analysis(DCA)demonstrating the highest net benefits across a broad spectrum of threshold probabilities(10%to 90%).The daily dose of propacetamol and the number of medications were found to be independently associated with postoperative liver enzyme abnormalities.This user-friendly nomogram,comprising these two factors,might assist clinicians in assessing the risks of propacetamol-related liver dysfunction following surgery.展开更多
基金Egyptian Science and Technology and Innovation Fund(STIFA)for the support of the study through grant No.46667 entitled“Sustainability of Lab Capacities of the Center of Drug Discovery Research and Development”.
文摘Background:Corchorus olitorius L.(Malvaceae)is a green leafy vegetable widely consumed in the Middle East and valued for its rich nutritional content.Its essential oils,an important class of secondary metabolites,are of growing interest for potential use in cosmetics and fragrance industries due to their bioactive properties.Methods:Leaves of C.olitorius cultivated in Egypt were extracted using microwave-assisted hydrodistillation(MAHD)and conventional hydrodistillation(HD).The oils were analyzed by gas chromatography-mass spectrometry(GC-MS)to characterize their chemical profiles.In vitro assays were conducted to evaluate their anti-elastase and anti-collagenase activities,and in silico studies were performed to predict the pharmacokinetic and pharmacodynamic properties of major constituents.Results:GC-MS analysis showed that aldehydes,alkanes,fatty alcohols,fatty acids,and their derivatives were the predominant compound classes in both oils.Notably,oxygenated diterpenes(11.22%)were present exclusively in the MAHD oil,while triterpenoids(16.37%)were found only in the HD oil.The MAHD oil demonstrated stronger In vitro anti-elastase(IC_(50)=42.5μg/mL)and anti-collagenase(IC_(50)=131.5μg/mL)activities compared to the HD oil(IC_(50)=66.7 and 206.8μg/mL,respectively),reflecting an approximate 36.3%improvement in elastase inhibition and 36.4%improvement in collagenase inhibition.In silico docking indicated that the triterpenoidβ-amyrin acetate showed the highest predicted binding affinity for porcine pancreatic elastase(PDB ID:6QEO,ΔG=−8.1 kcal/mol)and collagenase(PDB ID:456C,ΔG=−9.1 kcal/mol)among the major compounds analyzed.Conclusion:These findings demonstrate that MAHD is a greener and more efficient extraction method,yielding oil with enhanced enzyme inhibitory activity compared to conventional HD.The promising anti-elastase and anti-collagenase properties suggest that C.olitorius MAHD oil could serve as a potential candidate for anti-aging cosmetic formulations,following further validation.
基金supported by the National Natural Science Foundation of China (No.90411020)Major State Basic Research Development Program of China (973 Program)(2002CB412502).
文摘A study was conducted to determine the effects of elevated CO2 on soil N process at Changbai Mountain in Jilin Province, northeastern China （42°24＂N, 128°06＂E, and 738 m elevation）. A randomized complete block design of ambient and elevated CO2 was established in an open-top chamber facility in the spring of 1999. Changpai Scotch pine （Pinus sylvestris var. sylvestriformis seeds were sowed in May, 1999 and CO2 fumigation treatments began after seeds germination. In each year, the exposure started at the end of April and stopped at the end of October. Soil samples were collected in June and August 2006 and in June 2007, and soil nitrifying, denitrifying and N2-fixing enzyme activities were measured. Results show that soil nitrifying enzyme activities （NEA） in the 5-10 cm soil layer were significantly increased at elevated CO2 by 30.3% in June 2006, by 30.9% in August 2006 and by 11.3% in June 2007. Soil denitrifying enzyme activities （DEA） were significantly decreased by elevated CO2 treatment in June 2006 （P 〈 0.012） and August 2006 （P 〈 0.005） samplings in our study; no significant difference was detected in June 2007, and no significant changes in N2-fixing enzyme activity were found. This study suggests that elevated CO2 can alter soil nitrifying enzyme and denitrifying enzyme activities.
基金supported by the Fundacao de Amparo a Pesquisa do Estado de Sao Paulo(FAPESP,Sao Paulo,SP,BRAZIL)for the scholarship of the first authors(2019/24820-3 and 2022/00989-1)and the PDIP grant(2017/50339-5).
文摘Background The environmental impact of feedlot operations is a growing concern,as cattle excrete a significant portion of feed nutrients as waste.Exogenous feed enzymes(EFE)have gained interest for their potential to enhance feed efficiency in ruminants by improving nutrient digestion.However,EFE effects on ruminal parameters have shown inconsistencies,with limited research on nitrogen metabolism and rumen microbiome impacts.Moreover,the synergistic effects of combining different EFEs remain unclear.This study aimed to evaluate the effects of individual and combined EFE products in feedlot diets on ruminal fermentation parameters,nitrogen metabolism,and ruminal microbial communities.Ten rumen-cannulated Nellore steers[543±28.6 kg of body weight(BW)]were distributed in a replicated Latin-square design(5×5)in individual pens.Treatments included:control(CON,no EFE supplementation),amylase[AML,0.5 g/kg of diet dry matter(DM)],xylanase(FBL,0.9 g/kg DM),half dose combination(HD,0.25 g of AML+0.45 g of FBL/kg of DM),and full dose combination(FD,0.5 g of AML+0.90 g of FBL/kg of DM).The experimental period lasted 19 d and included total urine and feces collection(d 15 to 18)and rumen fluid sampling(d 19)at 0,4,8,12,and 16 h post-feeding for ammonia,volatile fatty acids(VFA),pH and microbiome analysis.Results EFE supplemented animals exhibited lower ruminal ammonia concentrations(P=0.040),and higher acetate proportions(P<0.001)compared to the control group.EFE supplementation resulted in reduced nitrogen(N)excretion in feces(P=0.049)and urine(P=0.036),contributing to improved N retention and efficiency(P=0.045).Additionally,EFE products induced shifts in various microbial taxa at family and genera levels(P≤0.10),which may be associated with the changes observed in ruminal fermentation.Conclusions Our findings demonstrate that EFE supplementation enhances nitrogen retention,reduces ruminal ammonia,and alters ruminal fermentation profiles and microbial populations in feedlot cattle.While the expected synergism between amylase and xylanase did not significantly impact rumen fermentation parameters,it did induce shifts in the rumen microbiome.These results suggest that EFE supplementation may be a promising strategy for improving nutrient utilization and potentially reducing the environmental impact of feedlot operations.
基金financially supported by the National Natural Science Foundation,China(Nos.22074095&22374103(Y.Lin))Beijing Natural Science Foundation(No.2222005(Y.Lin))。
文摘Natural enzymes are able to precisely bind substrates and catalyze activities because of their distinct framework structures.To mimic this ability,chemists are designing framework structures that resemble real enzymes.The use of metal-organic frameworks(MOFs)to mimic natural enzymes has advanced recently;this paper reviews these developments.This research specifically focuses on how the catalytically active center of natural enzymes can be exactly replicated by carefully controlling the composition and structure of MOFs.By identifying and attaching to substrates,MOFs can accelerate changes in a manner akin to that of real enzymes.The role of MOFs in simulating catalytic processes,enzyme activity,and potential uses in brain chemistry are also investigated in this work.It also discusses the most recent MOF applications in detecting and treating chemical abnormalities of the brain.The report finishes with a discussion of future research areas and potential applications,providing useful insights for researchers in the subject.
基金supported by the National Key Research and Development Program of China(2019YFA0905100)the National Natural Science Foundation of China(21991102,22378227).
文摘Constructing a framework carrier to stabilize protein conformation,induce high embedding efficiency,and acquire low mass-transfer resistance is an urgent issue in the development of immobilized enzymes.Hydrogen-bonded organic frameworks(HOFs)have promising application potential for embedding enzymes.In fact,no metal involvement is required,and HOFs exhibit superior biocompatibility,and free access to substrates in mesoporous channels.Herein,a facile in situ growth approach was proposed for the self-assembly of alcohol dehydrogenase encapsulated in HOF.The micron-scale bio-catalytic composite was rapidly synthesized under mild conditions(aqueous phase and ambient temperature)with a controllable embedding rate.The high crystallinity and periodic arrangement channels of HOF were preserved at a high enzyme encapsulation efficiency of 59%.This bio-composite improved the tolerance of the enzyme to the acid-base environment and retained 81%of its initial activity after five cycles of batch hydrogenation involving NADH coenzyme.Based on this controllably synthesized bio-catalytic material and a common lipase,we further developed a two-stage cascade microchemical system and achieved the continuous production of chiral hydroxybutyric acid(R-3-HBA).
基金Supported by National Natural Science Foundation of China,No.82172915,No.81972648,and No.81773011Chongqing Medical University Program for Youth Innovation in Future Medicine,No.W0084+1 种基金Science and Technology Innovation Project of Chongqing Medical Universityand Chongqing Postdoctoral Science Foundation,No.CSTB2023NSCQ-BHX0134.
文摘Severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)enters host cells via the angiotensin-converting enzyme 2(ACE2)receptor.Mounting evidence has indicated the presence of hepatic SARS-CoV-2 infection and liver injury in pa-tients with coronavirus disease 2019(COVID-19).Understanding the mechanisms of hepatic SARS-CoV-2 infection is crucial for addressing COVID-19–related liver pathology and developing targeted therapies.This editorial discusses the signi-ficance of ACE2 in hepatic SARS-CoV-2 infection,drawing on the research by Jacobs et al.Their findings indicate that hepatic ACE2 expression,frequency of hepatic SARS-CoV-2 infection,and severity of liver injury are elevated in patients with pre-existing chronic liver diseases.These data suggest that hepatic ACE2 could be a promising therapeutic target for COVID-19.
文摘In recent years,chiral inorganic nanomaterials have become promising candidates for applications in sensing,catalysis,biomedicine,and photonics.Plasmonic nanomaterials with an intrinsic chiral structure exhibit intriguing geometry‑dependent optical chirality,which benefits the combination of plasmonic characteristics with chirality.Recent advances in the biomolecule‑directed geometric control of intrinsically chiral plasmonic nanomaterials have further provided great opportunities for their widespread applications in many emerging technological areas.In this review,we present the recent progress in biosensing using chiral inorganic nanomaterials,with a particular focus on electrochemical and enzyme‑mimicking catalytic approaches.This paper commences with a review of the basic tenets underlying chiral nanocatalysts,incorporating the chiral ligand‑induced mechanism and the architectures of intrinsically chiral nanostructures.Additionally,it methodically expounds upon the applications of chiral nanocatalysts in the realms of electrochemical biosensing and enzyme‑mimicking catalytic biosensing respectively.Conclusively,it proffers a prospective view of the hurdles and prospects that accompany the deployment of chiral nanoprobes for nascent biosensing applications.By rational design of the chiral nanoprobes,it is envisioned that biosensing with increasing sensitivity and resolution toward the single‑molecule level can be achieved,which will substantially promote sensing applications in many emerging interdisciplinary areas.
基金Supported by Special Projects in Key Areas for Guangdong Provincial Colleges and Universities (No.2021ZDZX2009)Guangzhou Medical University Discipline Construction Funds (Basic Medicine)(No.JCXKJS2022A05)。
文摘UBE2O is a distinctive ubiquitin-conjugating enzyme characterized by its large size(1292 residues)and dual E2/E3 enzymatic activities,enabling diverse ubiquitylation types.Unlike typical E2 enzymes(150~200 residues),UBE2O’s multifunctionality allows it to regulate substrate degradation,subcellular localization,and functional modulation.Emerging studies highlight its critical roles in protein quality control,erythroid differentiation,metabolic regulation,and maintenance of circadian rhythm.Dysregulation of UBE2O is implicated in various diseases,including cancers,neurodegenerative disorders,and metabolic diseases.This review extensively discusses the unique structural features,diverse biological functions,and pathological roles of UBE2O,as well as its therapeutic potential for associated diseases.
文摘[Objectives]To prepare four kinds of fruit enzymes from pitaya(dragon fruit),papaya,orange and pineapple,and to detect their physicochemical properties and antioxidant activities.[Methods]Using pitaya,papaya,orange and pineapple as raw materials,pitaya enzyme,papaya enzyme,orange enzyme and pineapple enzyme were obtained by natural fermentation.The physical and chemical properties and antioxidant activity of the four fruit enzymes were analyzed,and the dominant strains in papaya ferment were identified.[Results]The pH of the four fruit enzymes ranged from 3.32 to 3.59.The sensory evaluation of orange and papaya enzymes was relatively superior;among them,the orange enzyme exhibited the highest hydroxyl radical scavenging rate(95.76%),while the pineapple enzyme had the highest total phenol content(27.21μg/mL).The papaya enzyme showed the highest values for DPPH,reducing power,and flavonoids,at 70.55,1.699,and 0.1216 mg/mL,respectively.Through the comprehensive comparing,the physicochemical properties and antioxidant activity of the papaya enzyme were relatively superior,with its dominant microbial species being Lactobacillus and Saccharomyces cerevisiae.[Conclusions]Papaya enzyme is a kind of functional food with great development potential,and this study can provide reference for the development of fruit enzyme with high added value.
文摘Directed degradation of abundant renewable lignin into small aromatic compounds is crucial for lignin valorization but challenging.The degradation of lignin in natural environments typically involves multienzyme synergy.However,the proteinaceous characteristics of lignin-degrading enzymes restrict their accessibility to certain regions of intricate lignin,resulting in the multienzyme systems being unable to fully demonstrate their effectiveness.Herein,a de novo biomimetic enzyme-nanozyme hybrid system was constructed by combiningλ-MnO_(2) nanozyme with laccase CotA from Bacillus subtilis,aimed at facilitating lignin degradation under mild conditions.The lignin degradation rate of the CotA+λ-MnO_(2) hybrid system was determined to be 25.15%,which was much higher than those of the lignin degradation systems with only laccase CotA(15.32%)orλ-MnO_(2) nanozyme(14.90%).Notably,the proportion of aromatic chemicals in the products derived from the hybrid system reached as much as 48%,which was 41.2%and 118.2%higher than those of the CotA-andλ-MnO_(2)-catalyzed systems,respectively.Analysis of products mapping and lignin structure changes suggested that the higher proportion of aromatic compounds in the CotA+λ-MnO_(2)hybrid system was more likely to benefit from the laccase-mediated methoxylation.Moreover,electron paramagnetic resonance analysis indicated that the intensity and kind of free radicals such as·OH and·O_(2)^(-)are closely linked to the degradation rate and reaction type.This work is the inaugural application of an enzyme-nanozyme hybrid system for lignin degradation,demonstrating the potential of the synergistic interaction between enzyme and nanozyme in the directed degradation of lignin.
基金supported by the Special Fund for Leading Talent in Mount Tai Industry of Shandong Province(TSCY20200121).
文摘The valorization of vegetable by-products is a promising strategy to combat climate change and achieve global carbon neutrality goals.This study aimed to exploit the high-value utilization of garlic by-products and to investigate the antihypertensive effects and potential mechanisms of the resulting angiotensin I-converting enzyme(ACE)inhibitory peptides.After protein extraction,enzymatic hydrolysis,and activity-directed fractionation,a potent and highly stable ACE inhibitory peptide(IC_(50):31.38μmol/L)was obtained,which was identified as VWAS and acted as a competitive inhibitor.VWAS stably bound to key residues in the ACE active center mainly through hydrogen bonding interactions and effectively lowered blood pressure in spontaneously hypertensive rats via alleviating renal and cardiac injuries,improving endothelial dysfunction,and regulating the renal renin-angiotensin system,antioxidant system,and anti-inflammatory system.These findings suggested that garlic protein-derived peptide(VWAS)was a desirable candidate for antihypertensive functional foods and provided guidance for the high-value utilization of garlic by-products.
基金Supported by the Special Fund for Agro-scientific Research in Public Interest in China(201503119-06-01)。
文摘In order to explore the remediation effects of lignite and biochar on Zn-contaminated soil,this experiment studied the impacts of adding lignite and biochar on soil respiration,soil enzyme activity,and organic carbon in Zn-contaminated soil through soil culture experiments,which provided a theoretical basis for the remediation and improvement as well as for the development and utilization of Zn-contaminated soil.The study was an L8(4×2^(2))orthogonal experimental design with eight treatments,in which there were four levels of Zn contamination concentration(Z0:0;Z1:125 mg•kg^(-1);Z2:250 mg•kg^(-1);Z3:500 mg•kg^(-1)),low-Zn(125-250 mg•kg^(-1))and high-Zn(500 mg•kg^(-1)),two levels of lignite(H0:0;H1:13.33 g•kg^(-1)),two levels of biochar(C0:0;C1:3.33 g•kg^(-1)),with four replicates per treatment.The results showed that lignite or biochar and their interaction had extremely significant effects on both respiration rate and accumulation in Zn-contaminated soil.Among the high Zn-contaminated treatments,the mixed application of lignite and biochar(Z3H1C1 treatment)had the fastest soil respiration rate and the highest soil respiration accumulation.Lignite,biochar and their interaction had significant or extremely significant effects on sucrase,catalase and polyphenol oxidase activities in Zn-contaminated soil.Among the high Zn-contaminated treatments(Z3),the addition of biochar alone had the most significant effects on the increase of soil sucrase and catalase enzyme activities,while the mixed application of lignite and biochar had the most significant effects on the increase of soil polyphenol oxidase activity.Lignite,biochar and their interaction had significant or extremely significant effects on the total organic carbon,active organic carbon and microbial carbon content of Zn-contaminated soils.Soil total organic carbon content in general peaked at day 80.Among the high Zn-contaminated treatments,the addition of biochar alone had the most significant effects on the total organic carbon content of the soil,while the mixed application of lignite and biochar had the most significant effect on the microbiomass carbon content.
文摘This study was conducted at the scientific center of Brazzaville. The objective was to assess the microbial characteristics and enzymes activities in the rhizosphere soil of Cajanus cajan and Milletia lauurentii. These plants have great importance in food and forestry. Microbial diversity management in the rhizosphere is the key for sustainable crop production or forest durability. DNA metagenomic sequencing was used to analyze the whole bacterial diversity, the microbial biomass was determinate by the fumigation-extraction method and the enzymes by the p-nitrophenol-β-D-glucoside for β-glucosidase, the p-nitrophenyl-N-acetyl-β-D-glucosaminide for β-Glucosaminidase. Dehydrogenase and acid phosphatase were quantified using 2,3,5-tryphenyl tetrazolium chloride and p-nitophenylphosphate respectively. The results show that, in Cajanus cajan culturable bacteria genera were mainly Acidobacterium, Skermanella, Rhodoplanes, Bacillus, Chloroflexus, Steroidobacter, Sphingomonas and Bradyrhizobium while in Milletia laurentii: Rhodoplanes, Bradyrhizobium, Bacillus, Sphingobacterium, Acidobacterium, Mesorhizobium, Nitrospira were the principal genera. In the two rhizosphere soils investigated, the uncultured bacteria exhibited relatively higher abundance, often for the same genera, than culturable bacteria. Metagenomic studies have revealed more bacterial diversity in each compared to when culturable bacteria were taken into account alone. The MBC and MBN were higher in the rhizosphere of Milletia than in rhizosphere of Cajanus. The same trend was observed with the enzyme activities. PCA of culturable and NMDS of unculturable soil bacteria genera shows that factors mainly involved in the carbon cycle such as MBC, members of the microbial community i.e. Acidobacterium, Skermanella, Chloroflexus, sand, C, β-glucosaminidase and dehydrogenase, were strongly correlated with Cajanus cajan. On the other hand, the MBN, Mesorhizobium, Bradyrhizobium, Burkholderia, Nitrospira, Nitratireductor, N, NH4, β-glucosidase and acid phosphatase involved in the N cycling, silt and clay were predominantly founded in the rhizosphere soil of Milletia laurentii. This study showed that metagenomic sequencing could improve the assessment of the microbial diversity structure of the rhizosphere.
基金supported by the National Key Research and Development Program of China(Nos.2018YFA0901100 and 2018YFC1801103)the National Natural Science Foundation of China(Nos.22206202 and 22076216)。
文摘The problem of soil polycyclic aromatic hydrocarbon(PAH)pollution in coking plant sites has been widely studied in recent years,but there is a lack of research on the correlation between soil microorganisms,soil metabolomics,and soil properties.Thus,in this study,the long-term impact of coke combustion on soil microbial community structure,enzyme activities,and metabolic pathways within a former coking plant site was investigated.Soil samples were collected from both the coking production area(CA group)and office area(OLA group),approximately 0 to 20 cm in depth.Compared with OLA group,elevated levels of 16 PAHs in the list of US EPA were detected by gas chromatography-mass spectrometry in the CA group.Several dominant microorganisms,such as Altererythrobacter,Lysobacter,and Sulfurifustis,were identified by 16 s ribosomal DNA sequencing in the CA group.The fatty acid biosynthesis pathway exhibited specific inhibition,while the phenylalanine metabolic pathwaywas promoted in response to PAH stress.Long-term PAH exposure led to the inhibition of soil urease activity.The co-occurrence network ofmicroorganisms revealed intricate patterns of co-metabolism and co-adaptation within complex bacterial communities,facilitating their adaptation to and decomposition of soil-borne PAHs.This research could provide valuable insights into the community characteristics andmetabolic mechanisms of microorganisms inhabiting PAH-polluted soil within coking plant sites.The findings enhance our understanding of the indigenous soil microbiome and its intricate network dynamics under the persistent stress of PAHs,contributing to a more comprehensive knowledge of soil ecosystems in such environments.
基金supported by the local innovative and research teams project of Guangdong province(2019BT02N630)national key research and development program(2022YFD1300401)+2 种基金Double first-class discipline promoting project(2023B10564001)National Natural Science Foundation of China(32272954)Natural Science Foundation of Guangdong Province,China(2024A1515013131).
文摘Background Intestinal oxidative stress serves as an endogenous host defense against the gut microbiota by increas-ing energy expenditure and therefore decreasing feed efficiency(FE).Several systems coordinately regulate redox bal-ance,including the mitochondrial respiratory chain,nicotinamide adenine dinucleotide phosphate(NADPH)oxidase,and different antioxidants.However,it remains unclear which redox balance compartments in the intestine are crucial for determining FE.Results In this study,we first screened the key targets of different metabolites and redox balance-related gene expression in broiler ceca.We then constructed a mouse colitis model to explore malic acid(MA)ability to allevi-ate intestinal inflammation.We further used controlled release technology to coat MA and investigated its effects on the intestinal redox status and FE in vivo.Finally,we examined the underlying mechanism by which MA modulated redox status using a porcine intestinal epithelial cell jejunum 2(IPEC-J2)cell model in vitro.Our results demonstrated that the MA/malic enzyme 3(ME3)pathway may play an important role in reducing oxidative stress in the broiler cecum.In addition,colon infusion of MA attenuated inflammatory phenotypes in the dextran sulfate sodium salt(DSS)induced mouse colitis model.Then,dietary supplementation with controlled-release MA pellet(MAP)reduced the feed to gain(F/G)ratio and promoted chicken growth,with reduced oxidative stress and increased bacterial diver-sity.Finally,the in vitro IPEC-J2 cell model revealed that ME3 mediated the effect of MA on cellular oxidative stress.Conclusion In summary,our study firstly revealed the important role of the MA/ME3 system in the hindgut of broiler chickens for improving intestinal health and FE,which may also be crucial for the implications of colon inflammation associated diseases.
基金Supported by the Special Fund for Agro-scientific Research in Public Interest in China(201503119-06-01)。
文摘The objective of this incubation study was to comprehensively evaluate the effects of organic fertilizer and biochar,both individually and in combination,on soil respiration dynamics,key enzyme activities and the concentrations of various organic carbon components in degraded mollisol.This study used a completely randomized factorial design with three application rates of organic fertilizer(M0:0,M1:13.64 g·kg^(-1),M2:27.27 g·kg^(-1))and biochar(C0:0,C1:1.36 g·kg^(-1),C2:2.73 g·kg^(-1)),resulting in nine treatments with four replicates each.Soil CO_(2) flux,organic carbon fractions including the total,active and microbial biomass carbon,and enzyme activities(sucrase,catalase and polyphenol oxidase)were measured over 120 days.Results indicated that the factors and their interactions significantly influenced all measured parameters.Soil respiration peaked at day 15,with M1C2 treatment exhibiting a rate of 10.90-fold higher than the control.The concentrations of the total,active and microbial biomass organic carbon reached maximum values on days 60,30 and 80,respectively.Notably,M2C1 treatment yielded the highest total organic carbon(86.35%increase)and microbial biomass carbon(17.84%increase).Enzyme activities were significantly enhanced,with the highest catalase activity observed for M0C2 treatment(10.14%increase).These results demonstrated that the co-application of organic fertilizer and biochar was a effective strategy for improving soil biological health and promoting carbon sequestration in degraded mollisol.The treatment combining a high rate of organic fertilizer with a low rate of biochar(M2C1)was identified as the most promising amendment strategy for fertility restoration.
基金supported by the Shanghai Sailing Program(22YF1416300)Youth Fund Project of National Natural Science Foundation of China(32202117)+1 种基金National Key Research and Development Program of China(2022YFD2100104)the China Agriculture Research System(CARS-47).
文摘Bigeye tuna is a protein-rich fish that is susceptible to spoilage during cold storage,however,there is limited information on untargeted metabolomic profiling of bigeye tuna concerning spoilage-associated enzymes and metabolites.This study aimed to investigate how cold storage affects enzyme activities,nutrient composition,tissue microstructures and spoilage metabolites of bigeye tuna.The activities of cathepsins B,H,L increased,while Na^(+)/K^(+)-ATPase and Mg^(2+)-ATPase decreased,α-glucosidase,lipase and lipoxygenase first increased and then decreased during cold storage,suggesting that proteins undergo degradation and ATP metabolism occurs at a faster rate during cold storage.Nutrient composition(moisture and lipid content),total amino acids decreased,suggesting that the nutritional value of bigeye tuna was reduced.Besides,a logistic regression equation has been established as a food analysis tool and assesses the dynamics and correlation of the enzyme of bigeye tuna during cold storage.Based on untargeted metabolomic profiling analysis,a total of 524 metabolites were identified in the bigeye tuna contained several spoilage metabolites involved in lipid metabolism(glycerophosphocholine and choline phosphate),amino acid metabolism(L-histidine,5-deoxy-5′-(methylthio)adenosine,5-methylthioadenosine),carbohydrate metabolism(D-gluconic acid,α-D-fructose 1,6-bisphosphate,D-glyceraldehyde 3-phosphate).The results of tissue microstructures of tuna showed a looser network and visible deterioration of tissue fiber during cold storage.Therefore,metabolomic analysis and tissue microstructures provide insight into the spoilage mechanism investigations on bigeye tuna during cold storage.
基金National Natural Science Foundation of China(22073023)Natural Science Foundation of Henan Province(242300421134)+1 种基金the Young Backbone Teacher in Colleges and Universities of Henan Province(2021GGJS020)Foundation of State Key Laboratory of Antiviral Drugs。
文摘The acetylpolyamine oxidase(APAO),spermine oxidase(SMO),and spermidine/spermine N1-acetyltransferase(SSAT)are pivotal enzymes in polyamine metabolism,exerting direct influence on polyamine homeostasis regulation.Dysfunctions in these enzymes are intricately linked to inflammatory diseases and cancers.Establishing their three-dimensional structures is essential for exploring enzymatic catalytic mechanisms and designing inhibitors at the atomic level.This article primarily assesses the precision of AlphaFold2 and molecular dynamics simulations in determining the three-dimensional structures of these enzymes,utilizing protein conformation rationality assessment,residue correlation matrix,and other techniques.This provides robust models for subsequent polyamine catabolic metabolism calculations and offers valuable insights for modeling proteins that have yet to acquire crystal structures.
基金supported by the Zhejiang Provincial Natural Science Foundation,China(ZCLMS25C1302)the Central Public-interest Scientific Institution Basal Research Fund(CPSIBRF-CNRRI-202408)the Agricultural Science and Technology Innovation Program(ASTIP)
文摘Rice seed germination marks the start of cultivation and influences subsequent seedling growth,and is affected by hormones and environmental factors.Ubiquitination plays a critical role in this process by regulating hormonal homeostasis.In the ubiquitination cascade,ubiquitin-conjugating enzymes(UBCs)function as ubiquitin carriers to determine linkage specificity of ubiquitin chains.In rice(Oryza sativa),39 UBC genes are identified,but only one gene OsUBC12 has been functionally studied to promote seed germination under low-temperatures in japonica rice.To elucidate the role of UBCs in seed germination,we generated CRISPR-Cas9 mutants for 23 UBC genes and overexpressed 20 members in rice.Among them,seven UBC genes(OsUBC4/6/7/12/25/27/48)were found to regulate seed germination,with OsUBC27 and OsUBC48 acting through the ABA pathway.Exogenous ABA inhibitors restored the germination rate of osubc27^(CR).RT-qPCR analysis revealed that the ABA synthesis genes OsNCED1-5 were significantly upregulated in the mutants.Further differential ubiquitination proteomics in knockout mutants and wild-type plants showed that OsUBC27 regulates ABA homeostasis by modulating ubiquitination of the ABA-degrading protein OsABA8ox1,thereby balancing seed dormancy and germination.Sequence analysis identified distinct haplotypes of the seven OsUBCs that showed differential distribution between japonica and indica subspecies.Our study provides valuable molecular targets for developing rice varieties resistant to seed vivipary.
基金The Medical Education Research Program of Henan Province,China(Grant No.WJLX2023015)and the Chinese International Medical Foundation for Clinical Pharmacy,China(Grant No.Z-2021-46-2101).
文摘To investigate the correlation between propacetamol and postoperative liver enzyme abnormalities among patients,a retrospective analysis was conducted on inpatients in the thoracic surgery department spanning from January 1 to June 30,2023.Causality assessment regarding propacetamol and postoperative liver enzyme abnormalities was performed using the updated Roussel Uclaf Causality Assessment Method(RUCAM).Furthermore,independent risk factors for liver enzyme abnormalities were identified through both univariate and multivariate analyses,followed by the construction and validation of a clinical nomogram.A total of 247 patients who received propacetamol were ultimately included in the study.Liver enzyme abnormalities post-surgery were more accurately predicted by considering the daily dose of propacetamol and the number of medications(OR(95%CI),4.831(2.797,8.344),P<0.001;10.007(3.878,25.823),P<0.001).A clinical predictive nomogram model was developed,incorporating these two independent risk factors,which exhibited favorable discrimination(AUC(95%CI),0.811(0.750,0.872)),calibration,and decision curve analysis(DCA)demonstrating the highest net benefits across a broad spectrum of threshold probabilities(10%to 90%).The daily dose of propacetamol and the number of medications were found to be independently associated with postoperative liver enzyme abnormalities.This user-friendly nomogram,comprising these two factors,might assist clinicians in assessing the risks of propacetamol-related liver dysfunction following surgery.
