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CFD Simulation of Passenger Car Aerodynamics and Body Parameter Optimization
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作者 Jichao Li Xuexin Zhu +2 位作者 Cong Zhang Shiwang Dang Guang Chen 《Fluid Dynamics & Materials Processing》 2025年第9期2305-2329,共25页
The rapid advancement of technology and the increasing speed of vehicles have led to a substantial rise in energy consumption and growing concern over environmental pollution.Beyond the promotion of new energy vehicle... The rapid advancement of technology and the increasing speed of vehicles have led to a substantial rise in energy consumption and growing concern over environmental pollution.Beyond the promotion of new energy vehicles,reducing aerodynamic drag remains a critical strategy for improving energy efficiency and lowering emissions.This study investigates the influence of key geometric parameters on the aerodynamic drag of vehicles.A parametric vehicle model was developed,and computational fluid dynamics(CFD)simulations were conducted to analyse variations in the drag coefficient(C_(d))and pressure distribution across different design configurations.The results reveal that the optimal aerodynamic performance—characterized by a minimized drag coefficient—is achieved with the following parameter settings:engine hood angle(α)of 15°,windshield angle(β)of 25°,rear window angle(γ)of 40°,rear upwards tail lift angle(θ)of 10°,ground clearance(d)of 100 mm,and side edge angle(s)of 5°.These findings offer valuable guidance for the aerodynamic optimization of vehicle body design and contribute to strategies aimed at energy conservation and emission reduction in the automotive sector. 展开更多
关键词 Automotive aerodynamic characteristics flow field aerodynamic drag drag reduction optimization cfd(computational fluid dynamics)
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Molecular dynamics simulations of collision cascades in polycrystalline tungsten
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作者 Lixia Liu Mingxuan Jiang +3 位作者 Ning Gao Yangchun Chen Wangyu Hu Hiuqiu Deng 《Chinese Physics B》 2025年第4期468-476,共9页
Using molecular dynamics methods,simulations of collision cascades in polycrystalline tungsten(W)have been conducted in this study,including different primary-knock-on atom(PKA)directions,grain sizes,and PKA energies ... Using molecular dynamics methods,simulations of collision cascades in polycrystalline tungsten(W)have been conducted in this study,including different primary-knock-on atom(PKA)directions,grain sizes,and PKA energies between 1 keV and 150 keV.The results indicate that a smaller grain size leads to more defects forming in grain boundary regions during cascade processes.The impact of high-energy PKA may cause a certain degree of distortion of the grain boundaries,which has a higher probability in systems with smaller grain sizes and becomes more pronounced as the PKA energy increases.The direction of PKA can affect the formation and diffusion pathways of defects.When the PKA direction is perpendicular to the grain boundary,defects preferentially form near the grain boundary regions;by contrast,defects are more inclined to form in the interior of the grains.These results are of great significance for comprehending the changes in the performance of polycrystalline W under the high-energy fusion environments and can provide theoretical guidance for further optimization and application of W-based plasma materials. 展开更多
关键词 collision cascades molecular dynamics simulations TUNGSTEN POLYCRYSTALLINE
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Improving the reliability of classical molecular dynamics simulations in battery electrolyte design
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作者 Xin He Yujie Zhang +5 位作者 Haomiao Li Min Zhou Wei Wang Ruxing Wang Kai Jiang Kangli Wang 《Journal of Energy Chemistry》 2025年第2期34-41,I0002,共9页
Explorations into new electrolytes have highlighted the critical impact of solvation structure on battery performance,Classical molecular dynamics(CMD)using semi-empirical force fields has become an essential tool for... Explorations into new electrolytes have highlighted the critical impact of solvation structure on battery performance,Classical molecular dynamics(CMD)using semi-empirical force fields has become an essential tool for simulating solvation structures.However,mainstream force fields often lack accuracy in describing strong ion-solvent interactions,causing disparities between CMD simulations and experimental observations.Although some empirical methods have been employed in some of the studies to address this issue,their effectiveness has been limited.Our CMD research,supported by quantum chemical calculations and experimental data,reveals that the solvation structure is influenced not only by the charge model but also by the polarization description.Previous empirical approaches that focused solely on adjusting ion-solvent interaction strengths overlooked the importance of polarization effects.Building on this insight,we propose integrating the Drude polarization model into mainstream force fields and verify its feasibility in carbonate,ether,and nitrile electrolytes.Our experimental results demonstrate that this approach significantly enhances the accuracy of CMD-simulated solvation structures.This work is expected to provide a more reliable CMD method for electrolyte design,shielding researchers from the pitfalls of erroneous simulation outcomes. 展开更多
关键词 ELECTROLYTE Classical molecular dynamics Solvation structure simulations
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A molecular dynamics simulation route towards Eu-doped multi-component transparent spectral conversion glass-ceramics
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作者 Xiuxia Xu Chenhao Wang +7 位作者 Di Wang Wenyan Zheng Zhiyu Liu Jincheng Du Xusheng Qiao Xianping Fan Zhiyu Wang Guodong Qian 《Journal of Rare Earths》 2025年第1期146-152,I0006,共8页
Eu^(2+)doped fluorosilicate glass-ceramics containing BaF_(2) nanocrystals have high potential as spectral conversion materials for organic solar cells.However,it is difficult to realize the efficient design of BaF_(2... Eu^(2+)doped fluorosilicate glass-ceramics containing BaF_(2) nanocrystals have high potential as spectral conversion materials for organic solar cells.However,it is difficult to realize the efficient design of BaF_(2):Eu^(2+)doped fluorosilicate glass and to vividly observe the glass microstructure in experiment through traditional trial-and-error glass preparation method.BaF_(2):Eu^(2+)doped fluorosilicate glassceramics with high transparency,and high photoluminescence(PL)performance were predicted,designed and prepared via molecular dynamics(MD)simulation method.By MD simulation prediction,self-organized nanocrystallization was realized to inhibit the abnormal growth of nanocrystals due to[AlO_(4)]tetrahedra formed in the fluoride-oxide interface.The introduction of NaF reduces the effective phonon energy of the glass because Na+will prompt Al^(3+)to migrate from the fluoride phase to the silicate phase and interface.The local environment of Eu^(2+)is optimized by predicting the doping concentration of EuF_(3) and 2 mol%EuF3 is the best concentration in this work.Glass-ceramics sample GC2Eu as spectral conversion layer was successfully applied on organic solar cells to obtain more available visible phonons with a high photoelectric conversion efficiency(PCE).This work confirms the guidance of molecular dynamics simulation methods for fluorosilicate glasses design. 展开更多
关键词 Molecular dynamics simulation Fluorosilicateglass Spectral conversion Organic solarcell RAREEARTHS
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Influence of Intermolecular Forces and Spatial Effects on the Mechanical Properties of Silicone Sealant by Molecular Dynamics Simulation
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作者 Wen Qi Yu-Fei Du +2 位作者 Bo-Han Chen Gui-Lei An Chun Lu 《Computers, Materials & Continua》 2025年第11期2763-2780,共18页
In the production process of silicone sealant,mineral oil is used to replace methyl silicone oil plasticizer in silicone sealant to reduce costs and increase efficiency.However,the silicone sealant content in mineral ... In the production process of silicone sealant,mineral oil is used to replace methyl silicone oil plasticizer in silicone sealant to reduce costs and increase efficiency.However,the silicone sealant content in mineral oil is prone to premature aging,which significantly reduces the mechanical properties of the silicone sealant and severely affects its service life.At the same time,there are few reports on the simulation research of the performance of silicone sealant.In this study,three mixed system models of crosslinking silicone sealant/plasticizer are constructed by the molecular dynamics simulationmethod,and the effect of three influencing factors,namely,crosslinking degree of silicone sealant,plasticizer content and external temperature on the mechanical properties of silicone sealant system is analyzed.The results show that at room temperature,the mechanical properties of the silicone sealant system are enhanced with the increase of its crosslinking degree;At a high crosslinking degree,with the increase of plasticizer content,themechanical properties of the silicone sealant system show an overall decreasing trend.When the methyl silicone oil in the range of 20%,themechanical properties of the silicone sealant appeared tobe a small degree of enhancement;As the temperature increases,the doped mineral oil mechanical properties of silicone sealant declined significantly,while doped with methyl silicone oil silicone sealant and doped with double-ended vinyl silicone oil silicone sealant mechanical properties have better heat resistance.It will provide scientific theoretical guidance for improving and predicting the mechanical properties of silicone sealant. 展开更多
关键词 Silicone sealant molecular dynamic simulation MICROSTRUCTURE mechanical property cross-linking
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Influence of Pressure on the Co-nonsolvency Effect of Homopolymer in Solutions:A Molecular Dynamics Simulation Study
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作者 Zhi-Yuan Wang Xing-Ye Li +4 位作者 Zheng Wang Yu-Hua Yin Run Jiang Peng-Fei Zhang Bao-Hui Li 《Chinese Journal of Polymer Science》 2025年第10期1929-1938,共10页
Stimuli-responsive polymers capable of rapidly altering their chain conformation in response to external stimuli exhibit broad applica-tion prospects.Experiments have shown that pressure plays a pivotal role in regula... Stimuli-responsive polymers capable of rapidly altering their chain conformation in response to external stimuli exhibit broad applica-tion prospects.Experiments have shown that pressure plays a pivotal role in regulating the microscopic chain conformation of polymers in mixed solvents,and one notable finding is that increasing the pressure can lead to the vanishing of the co-nonsolvency effect.However,the mecha-nisms underlying this phenomenon remain unclear.In this study,we systematically investigated the influence of pressure on the co-nonsolvency effect of single-chain and multi-chain homopolymers in binary mixed good-solvent systems using molecular dynamics simulations.Our results show that the co-nonsolvency-induced chain conformation transition and aggregation behavior significantly depend on pressure in allsingle-chain and multi-chain systems.In single-chain systems,at low pressures,the polymer chain maintains a collapsed state over a wide range of co-solvent fractions(x-range)owing to the co-nonsolvency effect.As the pressure increases,the x-range of the collapsed state gradually narrows,ac-companied by a progressive expansion of the chain.In multichain systems,polymer chains assemble into approximately spherical aggregates over a broad x-range at low pressures owing to the co-nonsolvency effect.Increasing the pressure reduces the x-range for forming aggregates and leads to the formation of loose aggregates or even to a state of dispersed chains at some x-range.These findings indicate that increasing the pressure can weaken or even offset the co-nonsolvency effect in some x-range,which is in good agreement with the experimental observations.Quantitative analysis of the radial density distributions and radial distribution functions reveals that,with increasing pressure,(1)the densities of both polymers and co-solvent molecules within aggregates decrease,while that of the solvent molecule increases;and(2)the effective interac-tions between the polymer and the co-solvent weaken,whereas those between the polymer and solvent strengthen.This enhances the incorpo-ration of solvent molecules within the chains,thereby weakening or even suppressing the chain aggregation.Our study not only elucidates the regulatory mechanism of pressure on the microscopic chain conformations and aggregation behaviors of polymers,but also may provide theo-retical guidance for designing smart polymericmaterials based on mixed solvents. 展开更多
关键词 Molecular dynamics simulation Mixed solvent Co-nonsolvency PRESSURE Chain conformation
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Fine-tuning a large language model for automating computational fluid dynamics simulations
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作者 Zhehao Dong Zhen Lu Yue Yang 《Theoretical & Applied Mechanics Letters》 2025年第3期219-225,共7页
Configuring computational fluid dynamics(CFD)simulations typically demands extensive domain expertise,limiting broader access.Although large language models(LLMs)have advanced scientific computing,their use in automat... Configuring computational fluid dynamics(CFD)simulations typically demands extensive domain expertise,limiting broader access.Although large language models(LLMs)have advanced scientific computing,their use in automating CFD workflows is underdeveloped.We introduce a novel approach centered on domain-specific LLM adaptation.By fine-tuning Qwen2.5-7B-Instruct on NL2FOAM,our custom dataset of 28,716 natural language-to-OpenFOAM configuration pairs with chain-of-thought(CoT)annotations enables direct translation from natural language descriptions to executable CFD setups.A multi-agent system orchestrates the process,autonomously verifying inputs,generating configurations,running simulations,and correcting errors.Evaluation on a benchmark of 21 diverse flow cases demonstrates state-of-the-art performance,achieving 88.7%solution accuracy and 82.6%first-attempt success rate.This significantly outperforms larger general-purpose models such as Qwen2.5-72B-Instruct,DeepSeek-R1,and Llama3.3-70B-Instruct,while also requiring fewer correction iterations and maintaining high computational efficiency.The results highlight the critical role of domain-specific adaptation in deploying LLM assistants for complex engineering workflows.Our code and fine-tuned model have been deposited at https://github.com/YYgroup/AutoCFD. 展开更多
关键词 Large language models Fine-tuning Computational fluid dynamics Automated cfd Multi-agent system
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Multi-scale Numerical Simulations for Crack Propagation in NiTi Shape Memory Alloys by Molecular Dynamics-based Cohesive Zone Model
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作者 LI Yunfei WANG Yuancen HE Qinshu 《Journal of Wuhan University of Technology(Materials Science)》 2025年第2期599-609,共11页
The multi-scale modeling combined with the cohesive zone model(CZM)and the molecular dynamics(MD)method were preformed to simulate the crack propagation in NiTi shape memory alloys(SMAs).The metallographic microscope ... The multi-scale modeling combined with the cohesive zone model(CZM)and the molecular dynamics(MD)method were preformed to simulate the crack propagation in NiTi shape memory alloys(SMAs).The metallographic microscope and image processing technology were employed to achieve a quantitative grain size distribution of NiTi alloys so as to provide experimental data for molecular dynamics modeling at the atomic scale.Considering the size effect of molecular dynamics model on material properties,a reasonable modeling size was provided by taking into account three characteristic dimensions from the perspective of macro,meso,and micro scales according to the Buckinghamπtheorem.Then,the corresponding MD simulation on deformation and fracture behavior was investigated to derive a parameterized traction-separation(T-S)law,and then it was embedded into cohesive elements of finite element software.Thus,the crack propagation behavior in NiTi alloys was reproduced by the finite element method(FEM).The experimental results show that the predicted initiation fracture toughness is in good agreement with experimental data.In addition,it is found that the dynamics initiation fracture toughness increases with decreasing grain size and increasing loading velocity. 展开更多
关键词 NiTi shape memory alloys multi-scale numerical simulation crack propagation the cohesive zone model molecular dynamics simulation
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Effect of Al_(2)O_(3)/SiO_(2) Ratio on the Structure and Tensile Strength of Glass Fiber by Experiment and Molecular Dynamics Simulation
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作者 KANG Junfeng XU Zhaozhi +6 位作者 YANG Shengyun KANG Zeyu GAO Wenkai CAO Yi TANG Zhiyao LI Yongyan YUE Yunlong 《Journal of Wuhan University of Technology(Materials Science)》 2025年第5期1251-1261,共11页
The effects of different Al_(2)O_(3)/SiO_(2)(Al/Si)ratios on the structure and tensile strength of Na_(2)O-CaO-MgO-Al_(2)O_(3)-SiO_(2)glass fiber were investigated by Raman,tensile strength tests and molecular dynamic... The effects of different Al_(2)O_(3)/SiO_(2)(Al/Si)ratios on the structure and tensile strength of Na_(2)O-CaO-MgO-Al_(2)O_(3)-SiO_(2)glass fiber were investigated by Raman,tensile strength tests and molecular dynamics simulation.The results showed that Al^(3+)mainly existed in the form of[AlO_(4)]within the glass network.With the increase of Al/Si ratio,the Si-O-Al linkage gradually became the main connection mode of glass network.The increase of bridging oxygen content and variation of Q^(n) indicated that a higher degree of network polymerization was formed.The tensile strength of the glass fibers obtained through experiments increased from 2653.56 to 2856.83 MPa,which was confirmed by the corresponding molecular dynamics simulation.During the stretching process,the Si-O bonds in the Si-O-Al linkage tended to break regardless of the compositional changes,and the increase of fractured Si-O-Al and Al-O-Al linkage absorbed more energy to resist the destroy. 展开更多
关键词 aluminosilicate glass short-range structure molecular dynamics simulations tensile strength
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A general simulation with trajectories in Heisenberg picture for quantum non-Markovian dynamics
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作者 Xinyu Chen Wenlin Li Chong Li 《Communications in Theoretical Physics》 2025年第7期45-53,共9页
We present a general numerical simulation method to solve non-Markovian dynamics of an open quantum system influenced by quantum Brownian motion.Based on the determined memory kernel function,this method enables the r... We present a general numerical simulation method to solve non-Markovian dynamics of an open quantum system influenced by quantum Brownian motion.Based on the determined memory kernel function,this method enables the resolution of non-Markovian dynamics for a wide range of system Hamiltonians and spectral densities.The system dynamics are described by exact integro-differential operator equations without any common approximations and they are simulated in this work by definite-number equations with stochastic initial conditions.This approach ensures the applicability of mature numerical methods and maintains computational complexity that remains largely invariant,even when dealing with more complex models.The high accuracy of our simulation is evident from a comparison with the results obtained from corresponding exact master equations,underscoring the reliability and precision of our method. 展开更多
关键词 non-markovian dynamics open quantum system stochastic simulation approach
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A three-dimensional CFD numerical simulation study on pressurized oxy-fuel gasification of poultry manure in an industrial-scale gasifier
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作者 Qinwen Liu Guoqing Lian +4 位作者 Wenli Dong Yu Su Wei Quan Leong Chi-Hwa Wang Wenqi Zhong 《Chinese Journal of Chemical Engineering》 2025年第5期115-127,共13页
As a renewable energy source,the thermal conversion of poultry manure,is a promising waste treatment solution that can generate circular economic outputs such as energy and reduce greenhouse gas emissions.Currently,pr... As a renewable energy source,the thermal conversion of poultry manure,is a promising waste treatment solution that can generate circular economic outputs such as energy and reduce greenhouse gas emissions.Currently,pressurized gasification of poultry manure is still a novel research field,especially when combined with a novel technological route of oxy-fuel gasification.Oxy-fuel gasification is a newly proposed and promising gasification technology for power generation that facilitates future carbon capture and storage.In this work,based on a commercially operated industrial-scale chicken manure gasification power plant in Singapore,we presented an interesting first exploration of the coupled pressurization technology for oxy-fuel gasification of poultry manure using CFD numerical simulation,analyzed the effects of pressure and oxygen enrichment concentration as well as the coupling mechanism between them,and discussed the conversion and emission of nitrogen-and sulfur-containing pollutants.The results indicate that under oxy-fuel gasification condition(Oxy-30,i.e.,30%O_(2)/70%CO_(2)),as the pressure increases from 0.1 to 0.5 MPa,the CO concentration in the syngas increases slightly,the H_(2)concentration increases to approximately 25%,and the CH4 concentration(less than 1%)decreases,resulting in an increase in the calorific value of syngas from 5.2 to 5.6 MJ·m^(-3).Compared to atmospheric pressure conditions,a relatively higher oxygen-enriched concentration interval(Oxy-40 to Oxy-50)under pressurized conditions is advantageous for autothermal gasification.Pressurization increases NO precursors production and also promotes homogeneous and heterogeneous reduction of NO,and provides favorable conditions for self-desulfurization.This work offers reference for the realization of a highly efficient and low-energy-consumption thermochemical treatment of livestock manure coupled with negative carbon emission technology. 展开更多
关键词 Oxy-fuel gasification Pressurized gasification Poultry manure Carbon negative cfd numerical simulation
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Unraveling the formation and stabilization of vesicle penetration pore by molecular dynamics simulations
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作者 Zhi Zheng Mingkun Zhang +2 位作者 Qing Yang Mian Long Shouqin Lü 《Acta Mechanica Sinica》 2025年第7期357-376,共20页
The formation of donut-shaped penetration pore upon membrane fusion in a closed lipid membrane system is of biological significance,since such the structures extensively exist in living body with various functions.How... The formation of donut-shaped penetration pore upon membrane fusion in a closed lipid membrane system is of biological significance,since such the structures extensively exist in living body with various functions.However,the related formation dynamics is unclear because of the limitation of experimental techniques.This work developed a new model of intra-vesicular fusion to elaborate the formation and stabilization of penetration pores by employing molecular dynamics simulations,based on simplified spherical lipid vesicle system,and investigated the regulation of membrane lipid composition.Results showed that penetration pore could be successfully formed based on the strategy of membrane fusion.The ease of intra-vesicular fusion and penetration pore formation was closely correlated with the lipid curvature properties,where negative spontaneous curvature of lipids seemed to be unfavorable for intra-vesicle fusion.Furthermore,the inner membrane tension around the pore was much larger than other regions,which governed the penetration pore size and stability.This work provided basic understanding for vesicle penetration pore formation and stabilization mechanisms. 展开更多
关键词 Penetration pore Membrane fusion Membrane tension Molecular dynamics simulation
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DNA-modulated Mo-Zn single-atom nanozymes: Insights from molecular dynamics simulations to smartphone-assisted biosensing
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作者 Zhimin Song Zhe Tang +4 位作者 Yu Zhang Yanru Zhou Xiaozheng Duan Yan Du Chong-Bo Ma 《Chinese Chemical Letters》 2025年第10期453-458,共6页
Recent advancements in nanotechnology have spotlighted the catalytic potential of nanozymes, particularly single-atom nanozymes(SANs), which are pivotal for innovations in biosensing and medical diagnostics. Among oth... Recent advancements in nanotechnology have spotlighted the catalytic potential of nanozymes, particularly single-atom nanozymes(SANs), which are pivotal for innovations in biosensing and medical diagnostics. Among others, DNA stands out as an ideal biological regulator. Its inherent programmability and interaction capabilities allow it to significantly modulate nanozyme activity. This study delves into the dynamic interplay between DNA and molybdenum-zinc single-atom nanozymes(Mo-Zn SANs). Using molecular dynamics simulations, we uncover how DNA influences the peroxidase-like activities of Mo-Zn SANs, providing a foundational understanding that broadens the application scope of SANs in biosensing.With these insights as a foundation, we developed and demonstrated a model aptasensor for point-ofcare testing(POCT), utilizing a label-free colorimetric approach that leverages DNA-nanozyme interactions to achieve high-sensitivity detection of lysozyme. Our work elucidates the nuanced control DNA exerts over nanozyme functionality and illustrates the application of this molecular mechanism through a smartphone-assisted biosensing platform. This study not only underscores the practical implications of DNA-regulated Mo-Zn SANs in enhancing biosensing platforms, but also highlights the potential of single-atom nanozyme technology to revolutionize diagnostic tools through its inherent versatility and sensitivity. 展开更多
关键词 Single-atom nanozymes DNA-regulated biosensors Molecular dynamics simulations Colorimetric aptasensing Point-of-care diagnostics
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Elastic-plastic behavior of nickel-based single crystal superalloys with γ-γ′phases based on molecular dynamics simulations
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作者 Jing-Zhao Cao Yun-Guang Zhang +3 位作者 Zhong-Kui Zhang Jiang-Peng Fan Qi Dong Ying-Ying Fang 《Chinese Physics B》 2025年第4期510-521,共12页
The effects of temperature and Re content on the mechanical properties,dislocation morphology,and deformation mechanism of γ-γ′phases nickel-based single crystal superalloys are investigated by using the molecular ... The effects of temperature and Re content on the mechanical properties,dislocation morphology,and deformation mechanism of γ-γ′phases nickel-based single crystal superalloys are investigated by using the molecular dynamics method through the model of γ-γ′phases containing hole defect.The addition of Re makes the dislocation distribution tend towards the γ phase.The higher the Re content,the earlier theγphase yields,while the γ′phase yields later.Dislocation bends under the combined action of the applied force and the resistance of the Re atoms to form a bend point.The Re atoms are located at the bend points and strengthen the alloy by fixing the dislocation and preventing it from cutting the γ′phase.Dislocations nucleate first in the γ phase,causing theγphase to deform plastically before the γ′phase.As the strain increases,the dislocation length first remains unchanged,then increases rapidly,and finally fluctuates and changes.The dislocation lengths in the γ phase are larger than those in the γ′phase at different temperatures.The dislocation length shows a decreasing tendency with the increase of the temperature.Temperature can affect movement of the dislocation,and superalloys have different plastic deformation mechanisms at low,medium and high temperatures. 展开更多
关键词 nickel-based single crystal superalloys elastic-plastic behavior dislocations molecular dynamics simulation
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Multi-target inhibition property of Persicaria hydropiper phytochemicals against gram-positive and gram-negative bacteria via molecular docking,dynamics simulation,and ADMET analysis
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作者 Golak Majumdar Shyamapada Mandal 《Digital Chinese Medicine》 2025年第1期76-89,共14页
Objective To evaluate the antibacterial potential of bioactive compounds from Persicaria hydropiper(L.)(P.hydropiper)against bacterial virulence proteins through molecular docking(MD)and experimental validation.Method... Objective To evaluate the antibacterial potential of bioactive compounds from Persicaria hydropiper(L.)(P.hydropiper)against bacterial virulence proteins through molecular docking(MD)and experimental validation.Methods Six bioactive compounds from P.hydropiper were investigated:catechin(CAT1),hyperin(HYP1),ombuin(OMB1),pinosylvin(PSV1),quercetin 3-sulfate(QSF1),and scutellarein(SCR1).Their binding affinities and potential binding pockets were assessed through MD against four bacterial target proteins with Protein Data Bank identifiers(PDB IDs):topoisomerase IV from Escherichia coli(E.coli)(PDB ID:3FV5),Staphylococcus aureus(S.aureus)gyrase ATPase binding domain(PDB ID:3U2K),CviR from Chromobacterium violaceum(C.violaceum)(PDB ID:3QP1),and glycosyl hydrolase from Pseudomonas aeruginosa(P.aeruginosa)(PDB ID:5BX9).Molecular dynamics simulations(MDS)were performed on the most promising compound-protein complexes for 50 nanoseconds(ns).Drug-likeness was evaluated using Lipinski's Rule of Five(RO5),followed by absorption,distribution,metabolism,excretion,and toxicity(ADMET)analysis using SwissADME and pkCSM web servers.Antibacterial activity was evaluated through disc diffusion assays,testing both individual compounds and combinations with conventional antibiotics[cefotaxime(CTX1,30μg/disc),ceftazidime(CAZ1,30μg/disc),and piperacillin(PIP1,100μg/disc)].Results MD revealed strong binding affinity(ranging from-9.3 to-5.9 kcal/mol)for all compounds,with CAT1 showing exceptional binding to 3QP1(-9.3 kcal/mol)and 5BX9(-8.4 kcal/mol).MDS confirmed the stability of CAT1-protein complexes with binding free energies of-84.71 kJ/mol(5BX9-CAT1)and-95.59 kJ/mol(3QP1-CAT1).Five compounds(CAT1,SCR1,PSV1,OMB1,and QSF1)complied with Lipinski's RO5 and showed favorable ADMET profiles.All compounds were non-carcinogenic,with CAT1 classified in the lowest toxicity class(VI).In antibacterial assays,CAT1 demonstrated significant activity against both gram-positive bacteria[Streptococcus pneumoniae(S.pneumoniae),S.aureus,and Bacillus cereus(B.cereus)][zone diameter of inhibition(ZDI):10-22 mm]and gram-negative bacteria[Acinetobacter baumannii(A.baumannii),E.coli,and P.aeruginosa](ZDI:14-27 mm).Synergistic effects were observed when CAT1 was combined with antibiotics and the growth inhibitory indices(GII)was 0.69-1.00.Conclusion P.hydropiper bioactive compounds,particularly CAT1,show promising antibacterial potential through multiple mechanisms,including direct inhibition of bacterial virulence proteins and synergistic activity with conventional antibiotics.The favorable pharmacological properties and low toxicity profiles support their potential development as therapeutic agents against bacterial infections. 展开更多
关键词 Persicaria hydropiper phytochemicals Molecular docking Molecular dynamics simulation Bacterial pathogenicity-related proteins PHARMACOKINETICS
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Molecular Dynamics Simulation of Bubble Arrangement and Cavitation Number Influence on Collapse Characteristics
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作者 Shuaijie Jiang Zechen Zhou +3 位作者 XiuliWang WeiXu WenzhuoGuo Qingjiang Xiang 《Fluid Dynamics & Materials Processing》 2025年第3期471-491,共21页
In nature,cavitation bubbles typically appear in clusters,engaging in interactions that create a variety of dynamicmotion patterns.To better understand the behavior ofmultiple bubble collapses and the mechanisms of in... In nature,cavitation bubbles typically appear in clusters,engaging in interactions that create a variety of dynamicmotion patterns.To better understand the behavior ofmultiple bubble collapses and the mechanisms of interbubble interaction,this study employs molecular dynamics simulation combined with a coarse-grained force field.By focusing on collapsemorphology,local density,and pressure,it elucidates how the number and arrangement of bubbles influence the collapse process.The mechanisms behind inter-bubble interactions are also considered.The findings indicate that the collapse speed of unbounded bubbles located in lateral regions is greater than that of the bubbles in the center.Moreover,it is shown that asymmetrical bubble distributions lead to a shorter collapse time overall. 展开更多
关键词 Molecular dynamics simulation coarse-grained force field bubble arrangement multiple bubbles bubble collapse
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Molecular Dynamics Simulations of Micromechanical Behaviours for AlCoCrFeNi_(2.1)High Entropy Alloy during Nanoindentation
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作者 Ji-Peng Yang Hai-Feng Zhang +1 位作者 Hong-Chao Ji Nan Jia 《Acta Metallurgica Sinica(English Letters)》 2025年第2期218-232,共15页
Eutectic high entropy alloys are noted for their excellent castability and comprehensive mechanical properties.The excellent mechanical properties are closely related to the activation and evolution of deformation mec... Eutectic high entropy alloys are noted for their excellent castability and comprehensive mechanical properties.The excellent mechanical properties are closely related to the activation and evolution of deformation mechanisms at the atomic scale.In this work,AlCoCrFeNi2.1 alloy is taken as the research object.The mechanical behaviors and deformation mechanisms of the FCC and B2 single crystals with different orientations and the FCC/B2 composites with K-S orientation relationship during nanoindentation processes are systematically studied by molecular dynamics simulations.The results show that the mechanical behaviors of FCC single crystals are significantly orientation-dependent,meanwhile,the indentation force of[110]single crystal is the lowest at the elastic-plastic transition point,and that for[100]single crystal is the lowest in plastic deformation stage.Compared with FCC,the stress for B2 single crystals at the elastic-plastic transition point is higher.However,more deformation systems such as stacking faults,twins and dislocation loops are activated in FCC single crystal during the plastic deformation process,resulting in higher indentation force.For composites,the flow stress increases with the increase of B2 phase thickness during the initial stage of deformation.When indenter penetrates heterogeneous interface,the significantly increased deformation system in FCC phase leads to a significant increase in indentation force.The mechanical behaviors and deformation mechanisms depend on the component single crystal.When the thickness of the component layer is less than 15 nm,the heterogeneous interfaces fail to prevent the dislocation slip and improve the indentation force.The results will enrich the plastic deformation mechanisms of multi-principal eutectic alloys and provide guidance for the design of nanocrystalline metallic materials. 展开更多
关键词 High entropy alloy Mechanical behavior Plastic deformation mechanism NANOINDENTATION Molecular dynamics simulation
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Plastic deformation mechanism of γ-phase U–Mo alloy studied by molecular dynamics simulations
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作者 Chang Wang Peng Peng Wen-Sheng Lai 《Chinese Physics B》 2025年第1期468-475,共8页
Uranium–molybdenum(U–Mo) alloys are critical for nuclear power generation and propulsion because of their superior thermal conductivity, irradiation stability, and anti-swelling properties. This study explores the p... Uranium–molybdenum(U–Mo) alloys are critical for nuclear power generation and propulsion because of their superior thermal conductivity, irradiation stability, and anti-swelling properties. This study explores the plastic deformation mechanisms of γ-phase U–Mo alloys using molecular dynamics(MD) simulations. In the slip model, the generalized stacking fault energy(GSFE) and the modified Peierls–Nabarro(P–N) model are used to determine the competitive relationships among different slip systems. In the twinning model, the generalized plane fault energy(GPFE) is assessed to evaluate the competition between slip and twinning. The findings reveal that among the three slip systems, the {110}<111>slip system is preferentially activated, while in the {112}<111> system, twinning is favored over slip, as confirmed by MD tensile simulations conducted in various directions. Additionally, the impact of Mo content on deformation behavior is emphasized. Insights are provided for optimizing process conditions to avoid γ → α′′ transitions, thereby maintaining a higher proportion of γ-phase U–Mo alloys for practical applications. 展开更多
关键词 U-Mo alloy molecular dynamics simulation plastic deformation mechanism dislocation slip twin formation
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Molecular Dynamics Simulation of the Interaction between R1336mzz(Z)and POE Lubricants
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作者 Haoyuan Jing Zhongye Wu +1 位作者 Xiaoyang Jiang Qingfen Ma 《Frontiers in Heat and Mass Transfer》 2025年第2期463-478,共16页
In the organic Rankine cycle,the refrigerant inevitably interacts with the lubricating oil.This study investigates the interaction mechanism between the fourth-generation refrigerant R1336mzz(Z)and the polyol ester(PO... In the organic Rankine cycle,the refrigerant inevitably interacts with the lubricating oil.This study investigates the interaction mechanism between the fourth-generation refrigerant R1336mzz(Z)and the polyol ester(POE)which is a representative component of the lubricating oil,using molecular dynamics simulations.The research focuses on pentaerythritol ester(PEC)with medium to long chain lengths,specifically PEC9.Relevant parameters such as solubility parameters,diffusion coefficients,binding energies,and radial distribution functions were calculated to elucidate the interaction dynamics.The variation in solubility parameters suggests that the miscibility of PEC9 and R1336mzz(Z)diminishes as the number of PEC9 chains increases.Additionally,the compatibility between these two components deteriorates with rising temperature,which is accompanied by a reduction in their binding energy.The simulation results presented in this study offer theoretical insights into the behavior of refrigerant R1336mzz(Z)upon contact with lubricating oil during actual operation,as well as implications for the operational efficiency of the equipment. 展开更多
关键词 REFRIGERANT lubricating oil R1336mzz(Z) polyol ester molecular dynamics simulation
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Mechanisms and interactions in the reduction of Fe_(2)O_(3) by H_(2)/CO mixed gas:Atomic insights from ReaxFF molecular dynamics simulations and experiments
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作者 Qiang Cheng Alberto NConejo +3 位作者 Jianliang Zhang Daniel Sopu Yaozu Wang Zhengjian Liu 《International Journal of Minerals,Metallurgy and Materials》 2025年第6期1372-1382,共11页
The experiment explored the Fe_(2)O_(3) reduction process with H_(2)/CO mixed gas and confirmed a promoting effect from CO when its volume proportion in mixed gas is 20% at 850℃.The ReaxFF molecular dynamics(MD)simul... The experiment explored the Fe_(2)O_(3) reduction process with H_(2)/CO mixed gas and confirmed a promoting effect from CO when its volume proportion in mixed gas is 20% at 850℃.The ReaxFF molecular dynamics(MD)simulation method was used to observe the reduction process and provide an atomic-level explanation.The accuracy of the parameters used in the simulation was verified by the density functional theory(DFT)calculation.The simulation shows that the initial reduction rate of H_(2) is much faster than that of CO(from 800 to 950℃).As the reduction proceeds,cementite,obtained after CO participates in the reduction at 850℃,will appear on the iron surface.Due to the active properties of C atoms in cementite,they are easy to further react with the O atoms in Fe_(2)O_(3).The generation of internal CO may destroy the dense structure of the surface layer,thereby affecting the overall reduction swelling of Fe_(2)O_(3).However,excess CO is detrimental to the reaction rate,mainly because of the poor thermodynamic conditions of CO in the temperature range and the molecular diffusion capacity is not as good as that of H_(2).Furthermore,the surface structures obtained after H_(2) and CO reduction have been compared,and it was found that the structure obtained by CO reduction has a larger surface area,thus promoting the sub sequent reaction of H_(2). 展开更多
关键词 hydrogen reduction hydrogen/carbon monoxide mixture ReaxFF molecular dynamics simulations reduction swelling atomic mechanisms
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